~amcg-stokes/fluidity/multimaterial_diagnostic

~amcg-stokes/fluidity/multimaterial_diagnostic_dependencies » Changes from revision 4138

From Revision 4138 to 4119

Rev	Summary	Authors	Date
4138	Merging in changes from lp:fluidity. Merging in changes from lp:fluidity.	Cian Wilson	11 years ago
4137	A fix for the failing test case. Do not consider all states... A fix for the failing test case. Do not consider all states unless the algorithm has multiple material_phase_support.	Cian Wilson	11 years ago
4136	Add field names to write statments. Add field names to write statments.	Rhodri Davies	11 years ago
4135	Fix now that there is an extra inner loop over states we're ... Fix now that there is an extra inner loop over states we're cycling over.	Cian Wilson	11 years ago
4134	Merging in changes from lp:fluidity. Merging in changes from lp:fluidity.	Cian Wilson	11 years ago
4133	Diagnostic dependencies with unspecified state names are now... Diagnostic dependencies with unspecified state names are now checked in all available states rather than just the current state. This allows bulk multimaterial properties to correctly automatically work out their dependencies when we don't know what the state names are going to be. This has been tested on bulk_viscosity when it depends on MaterialViscosity in multiple states with unknown names. Needs to be run through buildbot to see how it affects other tests.	Cian Wilson	11 years ago
4132	Changes the mesh decomposition tool from fldecomp to flredec... Changes the mesh decomposition tool from fldecomp to flredecomp. Previously, fldecomp was used for the initial decomposition of a mesh before running fluidity and flredecomp was used for re-decomposition after a checkpoint. fldecomp is a stand-alone program; flredecomp is part of Fluidity, using its input routines and its interface to the Zoltan partitioner. Vertex and element re-numbering is being developed in Fluidity to improve the NUMA and cache performance. Using flredecomp for all mesh decomposition means that the re-numbering needs to be implemented in Fluidity only and not in fldecomp as well. Most of the change is simply converting the tests from the fldecomp work-flow: <generate mesh> fldecomp -n <nparts> <other options> mesh mpiexec -n <nparts> fluidity <other options> sim.flml to the flredecomp work-flow: <generate mesh> mpiexec -n <nparts> flredecomp -i 1 -o <nparts> sim sim_flredecomp mpiexec -n <nparts> fluidity <other options> sim_flredecomp.flml These changes have been implemented in all of the parallel tests, longtests, and examples. Code changes are: 1/ For spherical meshes, the spatial dimension as well as the topological dimension is broadcast by insert_external_mesh (Populate_State.F90). Both dimensions are needed in flredecomp. Users will still have fldecomp in their work-flow, so fldecomp has not yet been removed. It now prints a message recommending that the decomposition is changed to use flredecomp, and warning that fldecomp will be removed in a future release of Fluidity. flredecomp cannot decompose Terreno meshes, so fldecomp has to be retained until any Fluidity simulations using Terreno meshes are converted to using the mesh extrusion available in Fluidity.	Mark Filipiak	11 years ago
4131	Look for a CGAL function in CGAL, not cos. [Build fix for --... Look for a CGAL function in CGAL, not cos. [Build fix for --enable-cgal flag]	Patrick Farrell	11 years ago
4130	Input of environmental options (e.g. forcing fields) is move... Input of environmental options (e.g. forcing fields) is moved from Usage.cpp into ocean_forcing/InitialiseOceanForcing.F90, to be accessible in flredecomp as well as fluidity. Relevant Fortran-C interfaces have been converted from using F77_FUNC to use iso_c_binding.	Mark Filipiak	11 years ago
4129	Improvements to the backward-facing step 2d kepsilon example... Improvements to the backward-facing step 2d kepsilon example - hopefully this will fix the buildbot failure.	Adam Candy	11 years ago
4128	Lifting a spud call out of an element loop in Lifting a spud call out of an element loop in calculate_grid_reynolds_number to improve performance.	Michael Lange	11 years ago
4127	Fixing the initialisation of detectors in parallel (lp:96709... Fixing the initialisation of detectors in parallel (lp:967093) and adding an according test case. Many thanks to M. Filipiak for providing the patch. Also fixing detector initialisation from file in parallel, which would previously segfault due to the legacy restriction to only one proc.	Michael Lange	11 years ago
4126	Godspeed backward-facing step 3d - fixes to the xml to ensur... Godspeed backward-facing step 3d - fixes to the xml to ensure the mesh is decomposed when necessary, whilst maintaining easy interface for users.	Adam Candy	11 years ago
4125	Validation fixes. Validation fixes.	Adam Candy	11 years ago
4124	Backward-facing step fixes for buildbot - both 2d and 3d cas... Backward-facing step fixes for buildbot - both 2d and 3d cases.	Adam Candy	11 years ago
4123	Update fluidity_options.rng - oddly it is inconsistent with ... Update fluidity_options.rng - oddly it is inconsistent with fluidity_options.rnc. This is a paradox born of witchcraft! Who has orchestrated such an inbalance? A witch hunt for the incomplete mergeree!	Adam Candy	11 years ago
4122	Backward-facing step buildbot testing fixes. A more detaile... Backward-facing step buildbot testing fixes. A more detailed summary of changes applied can be found in the merging branch: lp:~fluidity-core/fluidity/bfsfixes	Adam Candy	11 years ago
4121	Further fixes in examples only for additional brokenness in ... Further fixes in examples only for additional brokenness in the BFS makefiles to bring them in line with the new envcheck framework.	Tim Greaves	11 years ago
4120	Further to the backward-facing step fixes, this commit adds ... Further to the backward-facing step fixes, this commit adds in the envcheck recently introduced to all of the examples.	Adam Candy	11 years ago
4119	A last-minute fix from the BFS team to the examples. This sh... A last-minute fix from the BFS team to the examples. This should fix the examples and bring them back in line with the manual entries. This also breaks the ability of buildbot to test the 2d case, but since that was broken in the new version it's not a ѕignificant retrograde step. Changes purely in BFS examples.	Tim Greaves	11 years ago

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