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~christopher-hunt08/maus/maus_scifi_efficiency_study

~christopher-hunt08/maus/maus_scifi_efficiency_study

Viewing all changes in revision 1072.

Committer: Christopher Hunt
Date: 2014-02-17 10:39:11 UTC
mfrom: (1069.1.22 tracker_devel)
Revision ID: christopher.hunt08@imperial.ac.uk-20140217103911-8vc0seuurzudytgm

Merged

files added:
bin/user/scifi/cpp/scifi_analysis.cc

doc/doc_src/detectors/tracker/01-Introduction

doc/doc_src/detectors/tracker/01-Introduction/01-Introduction.tex

doc/doc_src/detectors/tracker/02-Definitions/Figures/fibre-channel-numbering.svg

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/03-Reference-surfaces-and-coordinate-systems.tex

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/Figures

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/Figures/doublet-layer.pdf

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/Figures/station.pdf

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/Figures/tracker.pdf

doc/doc_src/detectors/tracker/04-Reconstruction

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters/04-01-Hits-and-clusters.tex

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters/Figures

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters/Figures/cluster-resolution.pdf

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters/Figures/cluster-resolution.svg

doc/doc_src/detectors/tracker/04-Reconstruction/04-02-Space-points

doc/doc_src/detectors/tracker/04-Reconstruction/04-02-Space-points/04-02-Space-points.tex

doc/doc_src/detectors/tracker/04-Reconstruction/04-02-Space-points/Figures

doc/doc_src/detectors/tracker/04-Reconstruction/04-02-Space-points/Figures/SpacepointError.pdf

doc/doc_src/detectors/tracker/04-Reconstruction/04-03-Pattern-recognition

doc/doc_src/detectors/tracker/04-Reconstruction/04-03-Pattern-recognition/04-03-Pattern-recognition.tex

doc/doc_src/detectors/tracker/04-Reconstruction/04-03-Pattern-recognition/Figures

doc/doc_src/detectors/tracker/04-Reconstruction/04-03-Pattern-recognition/Figures/Track-model.pdf

doc/doc_src/detectors/tracker/04-Reconstruction/04-04-Track-fit

doc/doc_src/detectors/tracker/04-Reconstruction/04-04-Track-fit/04-04-Track-fit.tex

doc/doc_src/detectors/tracker/04-Reconstruction/04-Reconstruction.tex

doc/doc_src/detectors/tracker/05-DataStructure

doc/doc_src/detectors/tracker/05-DataStructure/05-DataStructure.tex

doc/doc_src/detectors/tracker/05-DataStructure/Figures

doc/doc_src/detectors/tracker/05-DataStructure/Figures/DataStructure.pdf

doc/doc_src/detectors/tracker/05-DataStructure/Figures/DataStructure.svg

doc/doc_src/detectors/tracker/06-CodeDesign

doc/doc_src/detectors/tracker/06-CodeDesign/06-CodeDesign.tex

doc/doc_src/detectors/tracker/06-CodeDesign/Figures

doc/doc_src/detectors/tracker/06-CodeDesign/Figures/DataFlow.pdf

doc/doc_src/detectors/tracker/06-CodeDesign/Figures/xyzPlotterOutput.pdf

doc/doc_src/detectors/tracker/11-Appendices

doc/doc_src/detectors/tracker/11-Appendices/11-01-Kuno-conjecture

doc/doc_src/detectors/tracker/11-Appendices/11-01-Kuno-conjecture/11-01-Kuno-conjecture.tex

doc/doc_src/detectors/tracker/11-Appendices/11-01-Kuno-conjecture/Figures

doc/doc_src/detectors/tracker/11-Appendices/11-01-Kuno-conjecture/Figures/kuno.pdf

doc/doc_src/detectors/tracker/11-Appendices/11-02-Space-point-standard-deviation

doc/doc_src/detectors/tracker/11-Appendices/11-02-Space-point-standard-deviation/11-02-Space-point-standard-deviation.tex

doc/doc_src/detectors/tracker/11-Appendices/11-04-Three-point-circle

doc/doc_src/detectors/tracker/11-Appendices/11-04-Three-point-circle/11-04-Three-point-circle.tex

doc/doc_src/detectors/tracker/11-Appendices/11-06-Helical-track-pattern-recognition

doc/doc_src/detectors/tracker/11-Appendices/11-06-Helical-track-pattern-recognition/11-06-Helical-track-pattern-recognition.tex

doc/doc_src/detectors/tracker/11-Appendices/11-Appendices.tex

doc/doc_tools/Doxyfile.general

doc/doc_tools/README

doc/doc_tools/generate_doc_index.py

doc/doc_tools/generate_maus_doc.py

doc/doc_tools/generate_third_party_doc.py

doc/doc_tools/micelogo.png

third_party/bash/54flex.bash

third_party/bash/55doxygen.bash

third_party/source/doxygen-1.8.6.1.src.tar.gz.md5

third_party/source/flex-2.5.37.tar.gz.md5

third_party/source/libmonitor.tarz.md5

files removed:
doc/doc_tools/Doxyfile.backend

doc/doc_tools/Doxyfile.framework

doc/doc_tools/Doxyfile.third_party

doc/doc_tools/doxy_dir.sh

third_party/source/clhep-2.0.4.7.tgz.md5

third_party/source/geant4.9.2.p04.tar.gz.md5

files modified:
README

RELEASENOTES

bin/simulate_mice.py

bin/user/scifi/datacard_mc_helical

configure

doc/doc_src/detectors/tracker.tex

doc/doc_src/detectors/tracker/02-Definitions/02-Definitions.tex

doc/doc_src/detectors/tracker/02-Definitions/Figures/doublet-layer-order.pdf

doc/doc_src/detectors/tracker/02-Definitions/Figures/doublet-layer.pdf

doc/doc_src/detectors/tracker/02-Definitions/Figures/fibre-channel-numbering.pdf

doc/doc_src/maus_user_guide.tex

doc/doc_src/mice_modules/mice_module_bureaucracy.tex

doc/doc_src/mice_modules/mice_module_geometry.tex

doc/maus_user_guide.pdf

install_build_test.bash

src/common_cpp/API/InputBase-inl.hh

src/common_cpp/API/MapBase-inl.hh

src/common_cpp/API/ModuleBase.cc

src/common_cpp/API/OutputBase-inl.hh

src/common_cpp/API/ReduceBase-inl.hh

src/common_cpp/Converter/ConverterFactory-inl.hh

src/common_cpp/Converter/DataConverters/CppJsonSpillConverter.cc

src/common_cpp/Converter/DataConverters/JsonCppSpillConverter.cc

src/common_cpp/DataStructure/DateTime.cc

src/common_cpp/FieldTools/SectorMagneticFieldMap.cc

src/common_cpp/Globals/GlobalsManager.cc

src/common_cpp/JsonCppProcessors/ArrayProcessors-inl.hh

src/common_cpp/JsonCppProcessors/ObjectMapProcessors-inl.hh

src/common_cpp/JsonCppProcessors/ObjectProcessor-inl.hh

src/common_cpp/JsonCppProcessors/SciFiClusterProcessor.cc

src/common_cpp/JsonCppProcessors/SciFiClusterProcessor.hh

src/common_cpp/JsonCppProcessors/TRefArrayProcessor-inl.hh

src/common_cpp/Maths/PolynomialMap.cc

src/common_cpp/Optics/PhaseSpaceVector.cc

src/common_cpp/Optics/PhaseSpaceVector.hh

src/common_cpp/Plotting/SciFi/TrackerDataManager.cc

src/common_cpp/Recon/SciFi/LeastSquaresFitter.cc

src/common_cpp/Recon/SciFi/LeastSquaresFitter.hh

src/common_cpp/Recon/SciFi/PatternRecognition.cc

src/common_cpp/Recon/SciFi/PatternRecognition.hh

src/common_cpp/Recon/SciFi/SciFiLookup.cc

src/common_cpp/Simulation/DetectorConstruction.cc

src/common_cpp/Simulation/FieldPhaser.cc

src/common_cpp/Simulation/MAUSPhysicsList.cc

src/common_cpp/Simulation/VirtualPlanes.cc

src/common_cpp/Utils/EMRChannelMap.cc

src/common_cpp/Utils/Globals.hh

src/common_cpp/Utils/KLChannelMap.cc

src/common_cpp/Utils/TOFCalibrationMap.cc

src/common_cpp/Utils/TOFChannelMap.cc

src/common_cpp/Utils/VersionNumber.hh

src/common_py/ConfigurationDefaults.py

src/input/InputCppDAQData/InputCppDAQData.cc

src/input/InputCppRoot/InputCppRoot.cc

src/map/MapCppEMRPlaneHits/MapCppEMRPlaneHits.cc

src/map/MapCppGlobalRawTracks/MapCppGlobalRawTracks.cc

src/map/MapCppGlobalTrackReconstructor/MapCppGlobalTrackReconstructor.cc

src/map/MapCppKLCellHits/MapCppKLCellHits.cc

src/map/MapCppKLDigits/MapCppKLDigits.cc

src/map/MapCppSimulation/MapCppSimulation.cc

src/map/MapCppTOFDigits/MapCppTOFDigits.cc

src/map/MapCppTOFSlabHits/MapCppTOFSlabHits.cc

src/map/MapCppTOFSpacePoints/MapCppTOFSpacePoints.cc

src/map/MapCppTrackerDigits/MapCppTrackerDigits.cc

src/map/MapCppTrackerMCDigitization/MapCppTrackerMCDigitization.cc

src/map/MapCppTrackerMCNoise/MapCppTrackerMCNoise.cc

src/map/MapCppTrackerMisalignments/MapCppTrackerMisalignments.cc

src/map/MapCppTrackerRecon/MapCppTrackerRecon.cc

src/map/MapCppTrackerRecon/MapCppTrackerRecon.hh

src/output/OutputCppRoot/OutputCppRoot.cc

src/py_cpp/PyField.cc

src/py_cpp/PyGlobals.cc

src/py_cpp/PyMiceModule.cc

src/py_cpp/PyRunActionManager.cc

src/py_cpp/PySimulation.cc

src/py_cpp/optics/PyCovarianceMatrix.cc

src/py_cpp/optics/PyOpticsModel.cc

src/py_cpp/optics/PyPhaseSpaceVector.cc

src/reduce/ReduceCppPatternRecognition/ReduceCppPatternRecognition.cc

src/reduce/ReduceCppTofCalib/ReduceCppTofCalib.cc

tests/cpp_unit/API/InputBaseTest.cc

tests/cpp_unit/API/MapBaseTest.cc

tests/cpp_unit/API/ModuleBaseTest.cc

tests/cpp_unit/API/OutputBaseTest.cc

tests/cpp_unit/API/ReduceBaseTest.cc

tests/cpp_unit/MAUSUnitTest.cc

tests/cpp_unit/Maths/MatrixTest.cc

tests/cpp_unit/Optics/PhaseSpaceVectorTest.cc

tests/cpp_unit/Recon/Global/DataStructureHelperTest.cc

tests/cpp_unit/Recon/SciFi/LeastSquaresFitterTest.cc

tests/cpp_unit/Recon/SciFi/PatternRecognitionTest.cc

tests/integration/test_scifi/test_scifi_recon/datacard_mc_helical

tests/integration/test_scifi/test_scifi_recon/test_scifi_recon.py *

tests/integration/test_simulation/test_tof/test_tof.py

tests/style/cpplint_exceptions.py

tests/style/ref-pylint.json

third_party/bash/29expat.bash *

third_party/bash/35geant4.9.6.bash

third_party/bash/70daq.bash

third_party/build_all.bash

third_party/source/cpplint.py

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added added

removed removed

bin/simulate_mice.py

bin/user/scifi/cpp/scifi_analysis.cc

bin/user/scifi/datacard_mc_helical

doc/doc_src/detectors/tracker.tex

doc/doc_src/detectors/tracker/01-Introduction/

doc/doc_src/detectors/tracker/01-Introduction/01-Introduction.tex

doc/doc_src/detectors/tracker/02-Definitions/02-Definitions.tex

doc/doc_src/detectors/tracker/02-Definitions/Figures/doublet-layer-order.pdf

doc/doc_src/detectors/tracker/02-Definitions/Figures/doublet-layer.pdf

doc/doc_src/detectors/tracker/02-Definitions/Figures/fibre-channel-numbering.pdf

doc/doc_src/detectors/tracker/02-Definitions/Figures/fibre-channel-numbering.svg

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/03-Reference-surfaces-and-coordinate-systems.tex

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/Figures/

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/Figures/doublet-layer.pdf

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/Figures/station.pdf

doc/doc_src/detectors/tracker/03-Reference-surfaces-and-coordinate-systems/Figures/tracker.pdf

doc/doc_src/detectors/tracker/04-Reconstruction/

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters/

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters/04-01-Hits-and-clusters.tex

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters/Figures/

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters/Figures/cluster-resolution.pdf

doc/doc_src/detectors/tracker/04-Reconstruction/04-01-Hits-and-clusters/Figures/cluster-resolution.svg

doc/doc_src/detectors/tracker/04-Reconstruction/04-02-Space-points/

doc/doc_src/detectors/tracker/04-Reconstruction/04-02-Space-points/04-02-Space-points.tex

doc/doc_src/detectors/tracker/04-Reconstruction/04-02-Space-points/Figures/

doc/doc_src/detectors/tracker/04-Reconstruction/04-02-Space-points/Figures/SpacepointError.pdf

doc/doc_src/detectors/tracker/04-Reconstruction/04-03-Pattern-recognition/

doc/doc_src/detectors/tracker/04-Reconstruction/04-03-Pattern-recognition/04-03-Pattern-recognition.tex

doc/doc_src/detectors/tracker/04-Reconstruction/04-03-Pattern-recognition/Figures/

doc/doc_src/detectors/tracker/04-Reconstruction/04-03-Pattern-recognition/Figures/Track-model.pdf

doc/doc_src/detectors/tracker/04-Reconstruction/04-04-Track-fit/

doc/doc_src/detectors/tracker/04-Reconstruction/04-04-Track-fit/04-04-Track-fit.tex

doc/doc_src/detectors/tracker/04-Reconstruction/04-Reconstruction.tex

doc/doc_src/detectors/tracker/05-DataStructure/

doc/doc_src/detectors/tracker/05-DataStructure/05-DataStructure.tex

doc/doc_src/detectors/tracker/05-DataStructure/Figures/

doc/doc_src/detectors/tracker/05-DataStructure/Figures/DataStructure.pdf

doc/doc_src/detectors/tracker/05-DataStructure/Figures/DataStructure.svg

doc/doc_src/detectors/tracker/06-CodeDesign/

doc/doc_src/detectors/tracker/06-CodeDesign/06-CodeDesign.tex

doc/doc_src/detectors/tracker/06-CodeDesign/Figures/

doc/doc_src/detectors/tracker/06-CodeDesign/Figures/DataFlow.pdf

doc/doc_src/detectors/tracker/06-CodeDesign/Figures/xyzPlotterOutput.pdf

doc/doc_src/detectors/tracker/11-Appendices/

doc/doc_src/detectors/tracker/11-Appendices/11-01-Kuno-conjecture/

doc/doc_src/detectors/tracker/11-Appendices/11-01-Kuno-conjecture/11-01-Kuno-conjecture.tex

doc/doc_src/detectors/tracker/11-Appendices/11-01-Kuno-conjecture/Figures/

doc/doc_src/detectors/tracker/11-Appendices/11-01-Kuno-conjecture/Figures/kuno.pdf

doc/doc_src/detectors/tracker/11-Appendices/11-02-Space-point-standard-deviation/

doc/doc_src/detectors/tracker/11-Appendices/11-02-Space-point-standard-deviation/11-02-Space-point-standard-deviation.tex

doc/doc_src/detectors/tracker/11-Appendices/11-04-Three-point-circle/

doc/doc_src/detectors/tracker/11-Appendices/11-04-Three-point-circle/11-04-Three-point-circle.tex

doc/doc_src/detectors/tracker/11-Appendices/11-06-Helical-track-pattern-recognition/

doc/doc_src/detectors/tracker/11-Appendices/11-06-Helical-track-pattern-recognition/11-06-Helical-track-pattern-recognition.tex

doc/doc_src/detectors/tracker/11-Appendices/11-Appendices.tex

doc/doc_src/maus_user_guide.tex

doc/doc_src/mice_modules/mice_module_bureaucracy.tex

doc/doc_src/mice_modules/mice_module_geometry.tex

doc/doc_tools/Doxyfile.backend

doc/doc_tools/Doxyfile.framework

doc/doc_tools/Doxyfile.general

doc/doc_tools/Doxyfile.third_party

doc/doc_tools/README

doc/doc_tools/doxy_dir.sh

doc/doc_tools/generate_doc_index.py

doc/doc_tools/generate_maus_doc.py

doc/doc_tools/generate_third_party_doc.py

doc/doc_tools/micelogo.png

doc/maus_user_guide.pdf

install_build_test.bash

src/common_cpp/API/InputBase-inl.hh

src/common_cpp/API/MapBase-inl.hh

src/common_cpp/API/ModuleBase.cc

src/common_cpp/API/OutputBase-inl.hh

src/common_cpp/API/ReduceBase-inl.hh

src/common_cpp/Converter/ConverterFactory-inl.hh

src/common_cpp/Converter/DataConverters/CppJsonSpillConverter.cc

src/common_cpp/Converter/DataConverters/JsonCppSpillConverter.cc

src/common_cpp/DataStructure/DateTime.cc

src/common_cpp/FieldTools/SectorMagneticFieldMap.cc

src/common_cpp/Globals/GlobalsManager.cc

src/common_cpp/JsonCppProcessors/ArrayProcessors-inl.hh

src/common_cpp/JsonCppProcessors/ObjectMapProcessors-inl.hh

src/common_cpp/JsonCppProcessors/ObjectProcessor-inl.hh

src/common_cpp/JsonCppProcessors/SciFiClusterProcessor.cc

src/common_cpp/JsonCppProcessors/SciFiClusterProcessor.hh

src/common_cpp/JsonCppProcessors/TRefArrayProcessor-inl.hh

src/common_cpp/Maths/PolynomialMap.cc

src/common_cpp/Optics/PhaseSpaceVector.cc

src/common_cpp/Optics/PhaseSpaceVector.hh

src/common_cpp/Plotting/SciFi/TrackerDataManager.cc

src/common_cpp/Recon/SciFi/LeastSquaresFitter.cc

src/common_cpp/Recon/SciFi/LeastSquaresFitter.hh

src/common_cpp/Recon/SciFi/PatternRecognition.cc

src/common_cpp/Recon/SciFi/PatternRecognition.hh

src/common_cpp/Recon/SciFi/SciFiLookup.cc

src/common_cpp/Simulation/DetectorConstruction.cc

src/common_cpp/Simulation/FieldPhaser.cc

src/common_cpp/Simulation/MAUSPhysicsList.cc

src/common_cpp/Simulation/VirtualPlanes.cc

src/common_cpp/Utils/EMRChannelMap.cc

src/common_cpp/Utils/Globals.hh

src/common_cpp/Utils/KLChannelMap.cc

src/common_cpp/Utils/TOFCalibrationMap.cc

src/common_cpp/Utils/TOFChannelMap.cc

src/common_cpp/Utils/VersionNumber.hh

src/common_py/ConfigurationDefaults.py

src/input/InputCppDAQData/InputCppDAQData.cc

src/input/InputCppRoot/InputCppRoot.cc

src/map/MapCppEMRPlaneHits/MapCppEMRPlaneHits.cc

src/map/MapCppGlobalRawTracks/MapCppGlobalRawTracks.cc

src/map/MapCppGlobalTrackReconstructor/MapCppGlobalTrackReconstructor.cc

src/map/MapCppKLCellHits/MapCppKLCellHits.cc

src/map/MapCppKLDigits/MapCppKLDigits.cc

src/map/MapCppSimulation/MapCppSimulation.cc

src/map/MapCppTOFDigits/MapCppTOFDigits.cc

src/map/MapCppTOFSlabHits/MapCppTOFSlabHits.cc

src/map/MapCppTOFSpacePoints/MapCppTOFSpacePoints.cc

src/map/MapCppTrackerDigits/MapCppTrackerDigits.cc

src/map/MapCppTrackerMCDigitization/MapCppTrackerMCDigitization.cc

src/map/MapCppTrackerMCNoise/MapCppTrackerMCNoise.cc

src/map/MapCppTrackerMisalignments/MapCppTrackerMisalignments.cc

src/map/MapCppTrackerRecon/MapCppTrackerRecon.cc

src/map/MapCppTrackerRecon/MapCppTrackerRecon.hh

src/output/OutputCppRoot/OutputCppRoot.cc

src/py_cpp/PyField.cc

src/py_cpp/PyGlobals.cc

src/py_cpp/PyMiceModule.cc

src/py_cpp/PyRunActionManager.cc

src/py_cpp/PySimulation.cc

src/py_cpp/optics/PyCovarianceMatrix.cc

src/py_cpp/optics/PyOpticsModel.cc

src/py_cpp/optics/PyPhaseSpaceVector.cc

src/reduce/ReduceCppPatternRecognition/ReduceCppPatternRecognition.cc

src/reduce/ReduceCppTofCalib/ReduceCppTofCalib.cc

tests/cpp_unit/API/InputBaseTest.cc

tests/cpp_unit/API/MapBaseTest.cc

tests/cpp_unit/API/ModuleBaseTest.cc

tests/cpp_unit/API/OutputBaseTest.cc

tests/cpp_unit/API/ReduceBaseTest.cc

tests/cpp_unit/MAUSUnitTest.cc

tests/cpp_unit/Maths/MatrixTest.cc

tests/cpp_unit/Optics/PhaseSpaceVectorTest.cc

tests/cpp_unit/Recon/Global/DataStructureHelperTest.cc

tests/cpp_unit/Recon/SciFi/LeastSquaresFitterTest.cc

tests/cpp_unit/Recon/SciFi/PatternRecognitionTest.cc

tests/integration/test_scifi/test_scifi_recon/datacard_mc_helical

tests/integration/test_scifi/test_scifi_recon/test_scifi_recon.py

tests/integration/test_simulation/test_tof/test_tof.py

tests/style/cpplint_exceptions.py

tests/style/ref-pylint.json

third_party/bash/35geant4.9.6.bash

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third_party/bash/55doxygen.bash

third_party/bash/70daq.bash

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third_party/source/cpplint.py

third_party/source/doxygen-1.8.6.1.src.tar.gz.md5

third_party/source/flex-2.5.37.tar.gz.md5

third_party/source/geant4.9.2.p04.tar.gz.md5

third_party/source/libmonitor.tarz.md5

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