~fluidity-core/fluidity/exorcised : changes

~fluidity-core/fluidity/exorcised » Changes from revision 4229

From Revision 3586 to 3567

Rev	Summary	Authors	Date
3586	Fix to Upwind_Stabilisation for the wonderful intel compiler... Fix to Upwind_Stabilisation for the wonderful intel compilers	Jon Hill	13 years ago
3585	SUPG requires an extra element_type object to act as the mod... SUPG requires an extra element_type object to act as the modified test function. This commit moves the allocation of this element_type outside the element loop for CG advection diffusion. This should facilitate making this loop thread safe.	david.ham at ac	13 years ago
3584	Addition of new option for Zoltan, additional_adapt_iteratio... Addition of new option for Zoltan, additional_adapt_iterations, documented in diamond. Change of Zoltan default final_partitioner to ParMETIS. Addition of a final load balance step with no edge-weighting applied used if tightening load_imbalance_tolerance fails to prevent empty paritions being created. General update of the Zoltan option descriptions.	Paul Woodhams	13 years ago
3583	Corrected a typo in the manual. Corrected a typo in the manual.	Christian Jacobs	13 years ago
3582	Exorcism of the dg-les code. This code was unused, untested,... Exorcism of the dg-les code. This code was unused, untested, of dubious mathematical correctness and, most sinfully of all, had a tensor field allocation in the facet loop.	david.ham at ac	13 years ago
3581	Fix a bug in the generation of the outline around shape func... Fix a bug in the generation of the outline around shape functions in visualise_elements. Incidentally also update Makefile.dependencies which seem to have got out of date.	david.ham at ac	13 years ago
3580	Adding an flredecomp branch of options to diamond. Options a... Adding an flredecomp branch of options to diamond. Options available are to select the partitioner used (default is ParMETIS) and to enable or disable Zoltan debugging. Also adding checks for empty partitons based on input_procs and target_procs which are passed to Zoltan when flredecomping. When flredecomping we now use Zoltan_LB_Partition as according to the Zoltan doc for Zoltan_LB_Balance, which we were previously using, NUM_GLOBAL_PARTS and NUM_LOCAL_PARTS are invalid but we need them when flredecomping.	Paul Woodhams	13 years ago
3579	Introduce new command line option to print timing profile Introduce new command line option to print timing profile A new option (-p, --profile) can now be specified to print timing results from profiler tictocs. Update manual accordingly.	Lawrence Mitchell	13 years ago
3578	One-line fix targetting bug lp:848018 One-line fix targetting bug lp:848018	Timothy Bond	13 years ago
3577	Moving project_to_continuous over to iso-c bindings. This fi... Moving project_to_continuous over to iso-c bindings. This fixes an odd memory error in the old version	Jon Hill	13 years ago
3576	One-line fix for bug lp:845558 addressing a make tools failu... One-line fix for bug lp:845558 addressing a make tools failure on Intel 11.1.	Timothy Bond	13 years ago
3575	Fix help output for --log option Fix help output for --log option Turning on logging doesn't set the verbosity level to 2, so don't claim that it does.	Lawrence Mitchell	13 years ago
3574	Bug-fix for https://bugs.launchpad.net/fluidity/+bug/842975,... Bug-fix for https://bugs.launchpad.net/fluidity/+bug/842975, for flredecomp on flmls with extrusion. This will be tested in periodic_2plus1_adaptivity_parallel (once it works :-)).	Stephan Kramer	13 years ago
3573	Incorporate spud r470 into the fluidity trunk Incorporate spud r470 into the fluidity trunk	Patrick Farrell	13 years ago
3572	New option to allow the ocean forcing routines to use instan... New option to allow the ocean forcing routines to use instantaneous values. This makes it a lot easier to construct our own ERA40-like netcdf files without having to worry about accumulating values.	Jon Hill	13 years ago
3571	Correction to version number update on initial and subseque... Correction to version number update on initial and subsequent* builds - merge request approved. This forces the version number to be updated on every make. Previously, version.h was only updated (created) in a fresh checkout and the version number was not updated on subsequent make calls. Further comments to note (from https://code.launchpad.net/~asc/fluidity/fixup-version-number2/+merge/71887): Note this is fine if the new make call is made in the root Fluidity folder. This change should be propagated to the following which also depend on version.h: femtools/Makefile.dependencies qg_strat/Makefile.in main/Makefile.in Using 'cd ..; make update_version_number' is a rather ugly way to achieve this - could possibly use a 'make -C ../ update_version_number' here? The important change is the one contained in this merge, and if make is called in the root folder first (as it is in most cases) this will achieve an update of the version number as desired.	Adam Candy	13 years ago
3570	Conditions on running with mg relaxed. It is now possible to... Conditions on running with mg relaxed. It is now possible to run without vertical_lumping and in this case a warning is given suggesting it is used.	Adam Candy	13 years ago
3569	Clean up the configure.in; a debugging print statement Clean up the configure.in; a debugging print statement got left behind somehow.	Patrick Farrell	13 years ago
3568	Merging ctjacobs-multiphase branch revisions (from r3452 to ... Merging ctjacobs-multiphase branch revisions (from r3452 to r3532 inclusive) into trunk. Branch queue passes all unit, short and medium tests on buildbot. Summary of changes: =================== - Implemented the fluid-particle drag term in Multiphase.F90. The mphase_stokes_law and mphase_tephra_settling test cases have been updated to use this new implementation, rather than a Python diagnostic Source field. An MMS test which includes this fluid-particle drag term is available in longtests/mphase_mms_p1dgp2_fpdrag, and converges at the expected order. - Implemented a new boundary condition type, called 'flux', for control volume discretisations. Updated the mphase_tephra_settling test case to use this, which allows to flux in through the boundary at the correct rate. Also added documentation regarding this boundary condition type to the manual. - When checking the tfield_bc_type in Field_Equations_CV.F90, we now compare against the more meaningful integer parameters BC_TYPE_WEAKDIRICHLET (=1), BC_TYPE_NEUMANN (=2), etc. - Added the 'tephra_settling' example to the examples directory, along with some documentation (background, simulation setup, results, pretty pictures) in manual/examples.tex. - In manual/model_equations.tex and manual/configuring_fluidity.tex: Added documentation on the multi-phase flow model equations, setting up multi-phase flow simulations, available inter-phase interaction terms, and current limitations of the model. - Corrected typos in various places in the manual. - Made the mphase_tephra_settling test more realistic by adding in random perturbations to the PhaseVolumeFraction influx. Also made a few minor tweaks (e.g. finish_time, timestep), and added pass_tests. - Added a three-phase test called mphase_three_layers. This checks that our model can simulate more than one dispersed phase, allowing us to use several different particle sizes in our tephra settling simulation later on. - Moved the mphase_tephra_settling_3d test case to the longtests directory.	Christian Jacobs	13 years ago
3567	I think this should fix Tim's BAS unit test fail. I think this should fix Tim's BAS unit test fail. The line was padded with whitespace at the end to position 157, running over the 132 character limit, and so the compiler didn't see the end of the line ...	Patrick Farrell	13 years ago