~gerald-mwangi/+junk/Thesis

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Masters/Doctoral Thesis 
% LaTeX Template
% Version 2.1 (2/9/15)
%
% This template has been downloaded from:
% http://www.LaTeXTemplates.com
%
% Version 2.0 major modifications by:
% Vel (vel@latextemplates.com)
%
% Original authors:
% Steven Gunn  (http://users.ecs.soton.ac.uk/srg/softwaretools/document/templates/)
% Sunil Patel (http://www.sunilpatel.co.uk/thesis-template/)
%
% License:
% CC BY-NC-SA 3.0 (http://creativecommons.org/licenses/by-nc-sa/3.0/)
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%----------------------------------------------------------------------------------------
%	PACKAGES AND OTHER DOCUMENT CONFIGURATIONS
%----------------------------------------------------------------------------------------

\documentclass[
11pt, % The default document font size, options: 10pt, 11pt, 12pt
%oneside, % Two side (alternating margins) for binding by default, uncomment to switch to one side
english, % ngerman for German
singlespacing, % Single line spacing, alternatives: onehalfspacing or doublespacing
%draft, % Uncomment to enable draft mode (no pictures, no links, overfull hboxes indicated)
%nolistspacing, % If the document is onehalfspacing or doublespacing, uncomment this to set spacing in lists to single
%liststotoc, % Uncomment to add the list of figures/tables/etc to the table of contents
%toctotoc, % Uncomment to add the main table of contents to the table of contents
%parskip, % Uncomment to add space between paragraphs
a4paper,
]{amsbook} % The class file specifying the document structure

\usepackage[utf8]{inputenc} % Required for inputting international characters
\usepackage[T1]{fontenc} % Output font encoding for international characters

\usepackage{palatino} % Use the Palatino font by default
\usepackage{ dsfont }
%\usepackage{biblatex} % User the bibtex backend with the authoryear citation style (which resembles APA)

%\addbibresource{OpticalFlowPapers.bib} % The filename of the bibliography

% \usepackage[autostyle=true]{csquotes} % Required to generate language-dependent quotes in the bibliography
\usepackage{graphicx,amssymb,amsmath,subfig,bm}
\usepackage{multirow}
\usepackage{algorithm}
% \usepackage{algorithm}
\usepackage{algpseudocode}
\usepackage[margin=3cm]{geometry}

%--------------------------------------------------------------
% NEW COMMANDS
%--------------------------------------------------------------
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\newcommand{\vx}{\ensuremath{\vector{x}}}
\newcommand{\vd}{\ensuremath{\vector{d}}}
\newcommand{\vdx}{\ensuremath{\vector{d}(\vector{x})}}
\graphicspath{{/home/gerald/Documents/Thesis/Figures/}}
% \newcommand{\statindep}{trslala}
% \bibliography{OpticalFlowPapers}
%----------------------------------------------------------------------------------------
%	THESIS INFORMATION
%----------------------------------------------------------------------------------------

% \thesistitle{Thesis Title} % Your thesis title, this is used in the title and abstract, print it elsewhere with \ttitle
% \supervisor{Dr. James \textsc{Smith}} % Your supervisor's name, this is used in the title page, print it elsewhere with \supname
% \examiner{} % Your examiner's name, this is not currently used anywhere in the template, print it elsewhere with \examname
% \degree{Doctor of Philosophy} % Your degree name, this is used in the title page and abstract, print it elsewhere with \degreename
% \author{John \textsc{Smith}} % Your name, this is used in the title page and abstract, print it elsewhere with \authorname
% \addresses{} % Your address, this is not currently used anywhere in the template, print it elsewhere with \addressname
% 
% \subject{Biological Sciences} % Your subject area, this is not currently used anywhere in the template, print it elsewhere with \subjectname
% \keywords{} % Keywords for your thesis, this is not currently used anywhere in the template, print it elsewhere with \keywordnames
% \university{\href{http://www.university.com}{University Name}} % Your university's name and URL, this is used in the title page and abstract, print it elsewhere with \univname
% \department{\href{http://department.university.com}{Department or School Name}} % Your department's name and URL, this is used in the title page and abstract, print it elsewhere with \deptname
% \group{\href{http://researchgroup.university.com}{Research Group Name}} % Your research group's name and URL, this is used in the title page, print it elsewhere with \groupname
% \faculty{\href{http://faculty.university.com}{Faculty Name}} % Your faculty's name and URL, this is used in the title page and abstract, print it elsewhere with \facname
% 
% \hypersetup{pdftitle=\ttitle} % Set the PDF's title to your title
% \hypersetup{pdfauthor=\authorname} % Set the PDF's author to your name
% \hypersetup{pdfkeywords=\keywordnames} % Set the PDF's keywords to your keywords
\newcommand{\var}{\mathbb{V}ar}
\begin{document}

% \frontmatter % Use roman page numbering style (i, ii, iii, iv...) for the pre-content pages

\pagestyle{plain} % Default to the plain heading style until the thesis style is called for the body content

%----------------------------------------------------------------------------------------
%	TITLE PAGE
%----------------------------------------------------------------------------------------

% \begin{titlepage}
% \begin{center}
% 
% \textsc{\LARGE \univname}\\[1.5cm] % University name
% \textsc{\Large Doctoral Thesis}\\[0.5cm] % Thesis type
% 
% \HRule \\[0.4cm] % Horizontal line
% {\huge \bfseries \ttitle}\\[0.4cm] % Thesis title
% \HRule \\[1.5cm] % Horizontal line
%  
% \begin{minipage}{0.4\textwidth}
% \begin{flushleft} \large
% \emph{Author:}\\
% \href{http://www.johnsmith.com}{\authorname} % Author name - remove the \href bracket to remove the link
% \end{flushleft}
% \end{minipage}
% \begin{minipage}{0.4\textwidth}
% \begin{flushright} \large
% \emph{Supervisor:} \\
% \href{http://www.jamessmith.com}{\supname} % Supervisor name - remove the \href bracket to remove the link  
% \end{flushright}
% \end{minipage}\\[3cm]
%  
% \large \textit{A thesis submitted in fulfilment of the requirements\\ for the degree of \degreename}\\[0.3cm] % University requirement text
% \textit{in the}\\[0.4cm]
% \groupname\\\deptname\\[2cm] % Research group name and department name
%  
% {\large \today}\\[4cm] % Date
% %\includegraphics{Logo} % University/department logo - uncomment to place it
%  
% \vfill
% \end{center}
% \end{titlepage}

%----------------------------------------------------------------------------------------
%	DECLARATION PAGE
%----------------------------------------------------------------------------------------

% \begin{declaration}
% \addchaptertocentry{\authorshipname}
% 
% \noindent I, \authorname, declare that this thesis titled, \enquote{\ttitle} and the work presented in it are my own. I confirm that:
% 
% \begin{itemize} 
% \item This work was done wholly or mainly while in candidature for a research degree at this University.
% \item Where any part of this thesis has previously been submitted for a degree or any other qualification at this University or any other institution, this has been clearly stated.
% \item Where I have consulted the published work of others, this is always clearly attributed.
% \item Where I have quoted from the work of others, the source is always given. With the exception of such quotations, this thesis is entirely my own work.
% \item I have acknowledged all main sources of help.
% \item Where the thesis is based on work done by myself jointly with others, I have made clear exactly what was done by others and what I have contributed myself.\\
% \end{itemize}
%  
% \noindent Signed:\\
% \rule[0.5em]{25em}{0.5pt} % This prints a line for the signature
%  
% \noindent Date:\\
% \rule[0.5em]{25em}{0.5pt} % This prints a line to write the date
% \end{declaration}

\cleardoublepage

%----------------------------------------------------------------------------------------
%	QUOTATION PAGE
%----------------------------------------------------------------------------------------

% \vspace*{0.2\textheight}
% 
% \noindent\enquote{\itshape Thanks to my solid academic training, today I can write hundreds of words on virtually any topic without possessing a shred of information, which is how I got a good job in journalism.}\bigbreak
% 
% \hfill Dave Barry

%----------------------------------------------------------------------------------------
%	ABSTRACT PAGE
%----------------------------------------------------------------------------------------

% \begin{abstract}
% \addchaptertocentry{\abstractname} % Add the abstract to the table of contents
% 
% The Thesis Abstract is written here (and usually kept to just this page). The page is kept centered vertically so can expand into the blank space above the title too\ldots
% 
% \end{abstract}

%----------------------------------------------------------------------------------------
%	ACKNOWLEDGEMENTS
%----------------------------------------------------------------------------------------

% \begin{acknowledgements}
% \addchaptertocentry{\acknowledgementname} % Add the acknowledgements to the table of contents
% 
% The acknowledgements and the people to thank go here, don't forget to include your project advisor\ldots
% 
% \end{acknowledgements}

%----------------------------------------------------------------------------------------
%	LIST OF CONTENTS/FIGURES/TABLES PAGES
%----------------------------------------------------------------------------------------

% \tableofcontents % Prints the main table of contents
% 
% \listoffigures % Prints the list of figures
% 
% \listoftables % Prints the list of tables

%----------------------------------------------------------------------------------------
%	ABBREVIATIONS
%----------------------------------------------------------------------------------------

% \begin{abbreviations}{ll} % Include a list of abbreviations (a table of two columns)
% 
% \textbf{LAH} & \textbf{L}ist \textbf{A}bbreviations \textbf{H}ere\\
% \textbf{WSF} & \textbf{W}hat (it) \textbf{S}tands \textbf{F}or\\
% 
% \end{abbreviations}

%----------------------------------------------------------------------------------------
%	PHYSICAL CONSTANTS/OTHER DEFINITIONS
%----------------------------------------------------------------------------------------

% \begin{constants}{lr@{${}={}$}l} % The list of physical constants is a three column table
% 
% % The \SI{}{} command is provided by the siunitx package, see its documentation for instructions on how to use it
% 
% Speed of Light & $c$ & \SI{2.99792458e8}{\meter\per\second} (exact)\\
% %Constant Name & $Symbol$ & $Constant Value$ with units\\
% 
% \end{constants}

%----------------------------------------------------------------------------------------
%	SYMBOLS
%----------------------------------------------------------------------------------------

% \begin{symbols}{lll} % Include a list of Symbols (a three column table)
% 
% $a$ & distance & \si{\meter} \\
% $P$ & power & \si{\watt} (\si{\joule\per\second}) \\
% %Symbol & Name & Unit \\
% 
% \addlinespace % Gap to separate the Roman symbols from the Greek
% 
% $\omega$ & angular frequency & \si{\radian} \\
% 
% \end{symbols}

%----------------------------------------------------------------------------------------
%	DEDICATION
%----------------------------------------------------------------------------------------

% \dedicatory{For/Dedicated to/To my\ldots} 

%----------------------------------------------------------------------------------------
%	THESIS CONTENT - CHAPTERS
%----------------------------------------------------------------------------------------

% \mainmatter % Begin numeric (1,2,3...) page numbering

% \pagestyle{thesis} % Return the page headers back to the "thesis" style

% Include the chapters of the thesis as separate files from the Chapters folder
% Uncomment the lines as you write the chapters
%\cite{BlackAnandanRobustOpticalFlow,SunRothOpticalFlowCVPR2010}
 \input{Chapters/ChapterOutline}
\input{Chapters/Background/Chapter2} 
 \input{Chapters/Background/ChapterImageRegistration}
 \input{Chapters/Background/ChapterLieGroupNoether} 
 \input{Chapters/Maintext/ChapterStructureTensorPrior}
 \input{Chapters/Maintext/ChapterOpticalFlow} 
\input{Chapters/Maintext/ChapterOpticalFlowResults} 

%----------------------------------------------------------------------------------------
%	THESIS CONTENT - APPENDICES
%----------------------------------------------------------------------------------------
% 
% \appendix % Cue to tell LaTeX that the following "chapters" are Appendices
% 
% % Include the appendices of the thesis as separate files from the Appendices folder
% % Uncomment the lines as you write the Appendices
% 
% \input{Appendices/AppendixA}
% %\input{Appendices/AppendixB}
% %\input{Appendices/AppendixC}

%----------------------------------------------------------------------------------------
%	BIBLIOGRAPHY
%----------------------------------------------------------------------------------------

%\printbibliography
\bibliographystyle{IEEEbib}
 \bibliography{OpticalFlowPapers}
%----------------------------------------------------------------------------------------

\end{document}