~jmtovar/supertree-toolkit/taxonomy

~jmtovar/supertree-toolkit/taxonomy_reeng » Changes from revision 274

From Revision 274 to 255

Rev	Summary	Authors	Date
274	Merged with Jon changes. Merged with Jon changes.	Jaime Tovar	9 years ago
273	Strang error when preparing to process for eol.org. Not Strang error when preparing to process for eol.org. Not data['results'][0] not always has an 'id' key. Fixed by wrapping the whole block in a try catching they KeyError and logging the event. But probably needs more checking. It will affect one species at a time. No taxonomy will be returned for that species.	Jaime Tovar	9 years ago
272	Validating most of key errors before they throw exception. R... Validating most of key errors before they throw exception. Reduces log file and speeds the process.	Jaime Tovar	9 years ago
271	Removing old TODOs no change in code. Removing old TODOs no change in code.	Jaime Tovar	9 years ago
270	Commenting for taxonomy from tree for documentation. Removin... Commenting for taxonomy from tree for documentation. Removing unnecessary TODOs.	Jaime Tovar	9 years ago
269	Comments for new test method. Comments for new test method.	Jaime Tovar	9 years ago
268	Adding taxonomy from tree, sending extra taxonomy to a new f... Adding taxonomy from tree, sending extra taxonomy to a new function so it can be called without duplicating code and function documentation.	Jaime Tovar	9 years ago
267	Tests for taxonomy from trees Tests for taxonomy from trees	Jaime Tovar	9 years ago
266	Fixing some comments and adding comments for main methods...... Fixing some comments and adding comments for main methods... still missing create_taxonomy_from_tree	Jaime Tovar	9 years ago
265	Comments and logging in some modules I have modified. Comments and logging in some modules I have modified.	jmtovar	9 years ago
264	Moving imports to the start of file. Moving imports to the start of file.	jmtovar	9 years ago
263	Fixing bug about not marking all tasks as done and waiting f... Fixing bug about not marking all tasks as done and waiting forever. Also enclosing all http gets in a try catch for HTTPError so threads don't die when a query fails.	Jaime Tovar	9 years ago
262	First version passing tests for create_taxonomy with indepen... First version passing tests for create_taxonomy with independent function and threads.	Jaime Tovar	9 years ago
261	Added function to work with independent trees when getting t... Added function to work with independent trees when getting taxa. Signatures for new functions for getting taxa.	Jaime Tovar	9 years ago
260	Better create taxonomy, but managed to pick a fossil taxa th... Better create taxonomy, but managed to pick a fossil taxa that's in EoL. Is all of PBDB in EoL now?	Jon Hill	9 years ago
259	And auto subs hooked up And auto subs hooked up	Jon Hill	9 years ago
258	That's the create taxonomy functions hooked up to the CLI That's the create taxonomy functions hooked up to the CLI	Jon Hill	9 years ago
257	Hooking up check taxonomy to cli Hooking up check taxonomy to cli	Jon Hill	9 years ago
256	Adding notes on how to do synonyms and incorporate PBDB Adding notes on how to do synonyms and incorporate PBDB	Jon Hill	9 years ago
255	Might be working...not sure. Looks like I came up with a com... Might be working...not sure. Looks like I came up with a complicated test	Jon Hill	9 years ago

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