5841
by Johannes Ring
Change license from LGPL 2.1 to LGPL v3 or later. |
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# Copyright (C) 2010 Marie E. Rognes
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#
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# This file is part of DOLFIN.
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#
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# DOLFIN is free software: you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License as published by
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# the Free Software Foundation, either version 3 of the License, or
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# (at your option) any later version.
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#
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# DOLFIN is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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5922.1.3
by Johannes Ring
Remove extra spaces in license header. |
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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5841
by Johannes Ring
Change license from LGPL 2.1 to LGPL v3 or later. |
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# GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public License
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5922.1.3
by Johannes Ring
Remove extra spaces in license header. |
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# along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
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5959.1.26
by Anders Logg
Updates in Python demos for new variational problem interface |
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#
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# Modified by Anders Logg 2011
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#
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# First added: 2010
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6312.1.17
by Anders Logg
Rename fine --> leaf_node, coarse --> root_node, fixing bug 842100 |
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# Last changed: 2011-10-04
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5475
by Anders Logg
Hand-merge gigantic patch from Marie (excellent work btw). Now passes |
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from dolfin import * |
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import time |
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class Noslip(SubDomain): |
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def inside(self, x, on_boundary): |
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return (x[1] < DOLFIN_EPS or x[1] > 1.0 - DOLFIN_EPS) or \ |
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(on_boundary and abs(x[0] - 1.5) < 0.1 + DOLFIN_EPS) |
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class Outflow(SubDomain): |
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def inside(self, x, on_boundary): |
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return x[0] > 4.0 - DOLFIN_EPS |
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6242
by Marie E. Rognes
Use "cpp_optimize" = True in auto-adaptive-navier-stokes demo. |
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# Use compiler optimizations
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parameters["form_compiler"]["cpp_optimize"] = True |
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# Allow approximating values for points that may be generated outside
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# of domain (because of numerical inaccuracies)
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5959.2.1
by Marie E. Rognes
Take 1 on getting unified Adaptive*VariationalSolver in place with new |
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parameters["allow_extrapolation"] = True |
5664
by Marie E. Rognes
Recompile form files with UFC_DEV set and various minos fixes. Looks |
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5475
by Anders Logg
Hand-merge gigantic patch from Marie (excellent work btw). Now passes |
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# Material parameters
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nu = Constant(0.02) |
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# Mesh
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7352.1.201
by Anders Logg
Use common mesh files for C++ and Python demos. Files not yet moved |
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mesh = Mesh("../channel_with_flap.xml.gz") |
5475
by Anders Logg
Hand-merge gigantic patch from Marie (excellent work btw). Now passes |
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# Define function spaces (Taylor-Hood)
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V = VectorFunctionSpace(mesh, "CG", 2) |
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Q = FunctionSpace(mesh, "CG", 1) |
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W = V * Q |
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# Define unknown and test function(s)
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(v, q) = TestFunctions(W) |
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5959.1.44
by Marie E. Rognes
Set Jacobian in auto-adaptive-navier-stokes demo and simplify some |
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w = Function(W) |
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(u, p) = (as_vector((w[0], w[1])), w[2]) |
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5475
by Anders Logg
Hand-merge gigantic patch from Marie (excellent work btw). Now passes |
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# Prescribed pressure
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p0 = Expression("(4.0 - x[0])/4.0") |
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# Define variational forms
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n = FacetNormal(mesh) |
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7352.2.12
by Martin Sandve Alnaes
Use dx() etc. syntax in adaptive python demos. |
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a = (nu*inner(grad(u), grad(v)) - div(v)*p + q*div(u))*dx() |
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a = a + inner(grad(u)*u, v)*dx() |
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L = - p0*dot(v, n)*ds() |
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5475
by Anders Logg
Hand-merge gigantic patch from Marie (excellent work btw). Now passes |
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F = a - L |
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# Define boundary conditions
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bc = DirichletBC(W.sub(0), Constant((0.0, 0.0)), Noslip()) |
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5993.1.5
by Marie E. Rognes
Add solve(eq, u, bcs, tol, M) to Python interface. Tested for both |
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# Create boundary subdomains
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5750
by Marie E. Rognes
Update auto-adaptive navier-stokes demo to use attached |
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outflow = Outflow() |
7225
by Johan Hake
Change name of std::size_t type in Python interface: |
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outflow_markers = MeshFunction("size_t", mesh, mesh.topology().dim() - 1) |
5750
by Marie E. Rognes
Update auto-adaptive navier-stokes demo to use attached |
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outflow_markers.set_all(1) |
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outflow.mark(outflow_markers, 0) |
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5921.1.8
by Marie E. Rognes
Update demos. |
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# Define new measure with associated subdomains
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5959.2.1
by Marie E. Rognes
Take 1 on getting unified Adaptive*VariationalSolver in place with new |
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ds = Measure("ds")[outflow_markers] |
5921.1.8
by Marie E. Rognes
Update demos. |
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5993.1.5
by Marie E. Rognes
Add solve(eq, u, bcs, tol, M) to Python interface. Tested for both |
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# Define goal
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5959.1.44
by Marie E. Rognes
Set Jacobian in auto-adaptive-navier-stokes demo and simplify some |
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M = u[0]*ds(0) |
5959.2.1
by Marie E. Rognes
Take 1 on getting unified Adaptive*VariationalSolver in place with new |
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5993.1.5
by Marie E. Rognes
Add solve(eq, u, bcs, tol, M) to Python interface. Tested for both |
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# Define error tolerance (with respect to goal)
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tol = 1.e-05 |
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# If no more control is wanted, do:
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7085.1.10
by Marie E. Rognes
Some more demo clean-ups. |
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# solve(F == 0, w, bc, tol=tol, M=M)
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5993.1.5
by Marie E. Rognes
Add solve(eq, u, bcs, tol, M) to Python interface. Tested for both |
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6046.1.25
by Anders Logg
Demo update for new interface |
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# Compute Jacobian form
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J = derivative(F, w) |
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5993.1.5
by Marie E. Rognes
Add solve(eq, u, bcs, tol, M) to Python interface. Tested for both |
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# Define variational problem
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6046.1.25
by Anders Logg
Demo update for new interface |
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pde = NonlinearVariationalProblem(F, w, bc, J) |
5993.1.5
by Marie E. Rognes
Add solve(eq, u, bcs, tol, M) to Python interface. Tested for both |
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5959.2.1
by Marie E. Rognes
Take 1 on getting unified Adaptive*VariationalSolver in place with new |
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# Define solver
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7085.1.6
by Marie E. Rognes
Get Python going again. |
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solver = AdaptiveNonlinearVariationalSolver(pde, M) |
5959.2.1
by Marie E. Rognes
Take 1 on getting unified Adaptive*VariationalSolver in place with new |
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# Set reference value
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solver.parameters["reference"] = 0.40863917; |
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5475
by Anders Logg
Hand-merge gigantic patch from Marie (excellent work btw). Now passes |
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# Solve to given tolerance
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7085.1.6
by Marie E. Rognes
Get Python going again. |
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solver.solve(tol) |
5993.1.5
by Marie E. Rognes
Add solve(eq, u, bcs, tol, M) to Python interface. Tested for both |
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7085.1.10
by Marie E. Rognes
Some more demo clean-ups. |
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# Show solver summary
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solver.summary(); |
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# Show all timings
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6494.2.1
by Marie E. Rognes
Use list_timings instead of summary in auto-adaptive-navier-stokes |
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list_timings() |
6159.1.2
by Marie E. Rognes
Redefine fine() in function_post.i. |
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6159.1.5
by Marie E. Rognes
Undo renaming fine_shared_ptr -> _fine etc, and use Johan's patent for |
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# Extract solutions on coarsest and finest mesh:
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6312.1.17
by Anders Logg
Rename fine --> leaf_node, coarse --> root_node, fixing bug 842100 |
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(u0, p0) = w.root_node().split() |
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(u1, p1) = w.leaf_node().split() |
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6159.1.5
by Marie E. Rognes
Undo renaming fine_shared_ptr -> _fine etc, and use Johan's patent for |
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plot(p0, title="Pressure on initial mesh") |
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plot(p1, title="Pressure on final mesh") |
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6159.1.2
by Marie E. Rognes
Redefine fine() in function_post.i. |
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interactive() |