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~johan-hake/dolfin/general-rk-solver

Viewing all changes in revision 7382.

Committer: Johan Hake
Date: 2013-03-13 13:18:49 UTC
mfrom: (7352.1.188 all)
Revision ID: hake.dev@gmail.com-20130313131849-ox80skz9ytj8ag0f

Merge with trunk

files added:
dolfin/io/ExodusFile.cpp

dolfin/io/ExodusFile.h

test/unit/io/python/Exodus.py

files removed:
demo/undocumented/netgen

demo/undocumented/netgen/cpp

demo/undocumented/netgen/cpp/README

demo/undocumented/netgen/python

demo/undocumented/netgen/python/demo_netgen.py

dolfin/fem/BoundaryCondition.cpp

dolfin/fem/BoundaryCondition.h

site-packages/dolfin/mesh/netgen.py

files modified:
ChangeLog

bench/fem/assembly/cpp/forms/Elasticity3D.h

bench/fem/assembly/cpp/forms/NSEMomentum3D.h

bench/fem/assembly/cpp/forms/Poisson2DP1.h

bench/fem/assembly/cpp/forms/Poisson2DP2.h

bench/fem/assembly/cpp/forms/Poisson2DP3.h

bench/fem/assembly/cpp/forms/StabStokes2D.h

bench/fem/assembly/cpp/forms/THStokes2D.h

bench/fem/convergence/cpp/forms/Poisson2D_1.h

bench/fem/convergence/cpp/forms/Poisson2D_2.h

bench/fem/convergence/cpp/forms/Poisson2D_3.h

bench/fem/convergence/cpp/forms/Poisson2D_4.h

bench/fem/convergence/cpp/forms/Poisson2D_5.h

bench/fem/convergence/cpp/forms/Poisson3D_1.h

bench/fem/convergence/cpp/forms/Poisson3D_2.h

bench/fem/convergence/cpp/forms/Poisson3D_3.h

bench/fem/convergence/cpp/forms/Poisson3D_4.h

bench/fem/convergence/cpp/forms/Poisson3D_5.h

bench/fem/multicore/cpp/NavierStokes.h

bench/fem/multicore/cpp/Poisson.h

bench/fem/speedup/cpp/CMakeLists.txt

bench/fem/speedup/cpp/Poisson.h

bench/function/evaluation/cpp/P1.h

demo/la/eigenvalue/cpp/StiffnessMatrix.h

demo/pde/biharmonic/cpp/Biharmonic.h

demo/pde/cahn-hilliard/cpp/CMakeLists.txt

demo/pde/cahn-hilliard/cpp/CahnHilliard2D.cpp

demo/pde/cahn-hilliard/cpp/CahnHilliard2D.h

demo/pde/cahn-hilliard/cpp/CahnHilliard3D.cpp

demo/pde/cahn-hilliard/cpp/CahnHilliard3D.h

demo/pde/hyperelasticity/cpp/HyperElasticity.h

demo/pde/hyperelasticity/cpp/main.cpp

demo/pde/mixed-poisson/cpp/MixedPoisson.h

demo/pde/navier-stokes/cpp/PressureUpdate.h

demo/pde/navier-stokes/cpp/TentativeVelocity.h

demo/pde/navier-stokes/cpp/VelocityUpdate.h

demo/pde/poisson/cpp/Poisson.h

demo/pde/poisson/cpp/main.cpp

demo/pde/stokes-iterative/cpp/Stokes.h

demo/pde/stokes-iterative/cpp/StokesPreconditioner.h

demo/undocumented/advection-diffusion/cpp/AdvectionDiffusion.h

demo/undocumented/advection-diffusion/cpp/Velocity.h

demo/undocumented/auto-adaptive-navier-stokes/cpp/AdaptiveNavierStokes.h

demo/undocumented/auto-adaptive-poisson/cpp/AdaptivePoisson.h

demo/undocumented/bcs/cpp/Poisson.h

demo/undocumented/bcs/cpp/main.cpp

demo/undocumented/block-matrix/cpp/StiffnessMatrix.h

demo/undocumented/conditional/cpp/Conditional.h

demo/undocumented/curl-curl/cpp/CurrentDensity.h

demo/undocumented/curl-curl/cpp/EddyCurrents.h

demo/undocumented/dg-advection-diffusion/cpp/AdvectionDiffusion.h

demo/undocumented/dg-advection-diffusion/cpp/Projection.h

demo/undocumented/dg-advection-diffusion/cpp/Velocity.h

demo/undocumented/dg-poisson/cpp/Poisson.h

demo/undocumented/elasticity/cpp/Elasticity.h

demo/undocumented/elasticity/cpp/main.cpp

demo/undocumented/elastodynamics/cpp/DG0_eps_xx.h

demo/undocumented/elastodynamics/cpp/ElastoDynamics.h

demo/undocumented/elastodynamics/cpp/main.cpp

demo/undocumented/eval/cpp/Projection.h

demo/undocumented/extrapolation/cpp/P1.h

demo/undocumented/extrapolation/cpp/P2.h

demo/undocumented/functional/cpp/EnergyNorm.h

demo/undocumented/lift-drag/cpp/Functionals.h

demo/undocumented/multidomain/cpp/MultiDomainPoisson.h

demo/undocumented/neumann-poisson/cpp/Poisson.h

demo/undocumented/nonlinear-poisson/cpp/NonlinearPoisson.h

demo/undocumented/nonmatching-interpolation/cpp/P1.h

demo/undocumented/nonmatching-interpolation/cpp/P3.h

demo/undocumented/nonmatching-projection/cpp/P1_projection.h

demo/undocumented/nonmatching-projection/cpp/P3.h

demo/undocumented/periodic/cpp/Poisson.h

demo/undocumented/periodic/cpp/main.cpp

demo/undocumented/poisson1D-in-2D/cpp/Poisson.h

demo/undocumented/poisson1D/cpp/Poisson.h

demo/undocumented/restriction/cpp/Poisson.h

demo/undocumented/singular/cpp/Poisson.h

demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.h

demo/undocumented/stokes-stabilized/cpp/Stokes.h

demo/undocumented/stokes-stabilized/cpp/main.cpp

demo/undocumented/stokes-taylor-hood/cpp/Stokes.h

demo/undocumented/stokes-taylor-hood/cpp/main.cpp

demo/undocumented/sym-dirichlet-bc/cpp/Poisson.h

demo/undocumented/waveguide/cpp/Forms.h

dolfin/CMakeLists.txt

dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp

dolfin/adaptivity/AdaptiveLinearVariationalSolver.h

dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp

dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.h

dolfin/adaptivity/ErrorControl.cpp

dolfin/adaptivity/ErrorControl.h

dolfin/adaptivity/GenericAdaptiveVariationalSolver.h

dolfin/adaptivity/adapt.cpp

dolfin/adaptivity/adaptivesolve.cpp

dolfin/adaptivity/adaptivesolve.h

dolfin/ale/Poisson1D.h

dolfin/ale/Poisson2D.h

dolfin/ale/Poisson3D.h

dolfin/common/Hierarchical.h

dolfin/common/MPI.h

dolfin/common/defines.cpp

dolfin/common/defines.h

dolfin/common/utils.h

dolfin/fem/AssemblerBase.cpp

dolfin/fem/ButcherScheme.cpp

dolfin/fem/ButcherScheme.h

dolfin/fem/DirichletBC.cpp

dolfin/fem/DirichletBC.h

dolfin/fem/DofMap.cpp

dolfin/fem/DofMapBuilder.cpp

dolfin/fem/DofMapBuilder.h

dolfin/fem/GenericDofMap.h

dolfin/fem/LinearVariationalProblem.cpp

dolfin/fem/LinearVariationalProblem.h

dolfin/fem/LinearVariationalSolver.cpp

dolfin/fem/NonlinearVariationalProblem.cpp

dolfin/fem/NonlinearVariationalProblem.h

dolfin/fem/NonlinearVariationalSolver.cpp

dolfin/fem/NonlinearVariationalSolver.h

dolfin/fem/RKSolver.cpp

dolfin/fem/SystemAssembler.cpp

dolfin/fem/SystemAssembler.h

dolfin/fem/assemble.cpp

dolfin/fem/assemble.h

dolfin/fem/dolfin_fem.h

dolfin/fem/solve.cpp

dolfin/fem/solve.h

dolfin/generation/CSGPrimitives2D.cpp

dolfin/generation/CSGPrimitives2D.h

dolfin/io/File.cpp

dolfin/la/GenericMatrix.cpp

dolfin/la/LinearSolver.h

dolfin/la/PETScMatrix.cpp

dolfin/la/PETScPreconditioner.cpp

dolfin/la/PaStiXLUSolver.cpp

dolfin/la/PaStiXLUSolver.h

dolfin/la/STLMatrix.cpp

dolfin/la/STLMatrix.h

dolfin/la/TensorLayout.cpp

dolfin/la/TensorLayout.h

dolfin/mesh/Mesh.cpp

dolfin/mesh/Mesh.h

dolfin/mesh/PeriodicBoundaryComputation.cpp

dolfin/swig/adaptivity/docstrings.i

dolfin/swig/fem/docstrings.i

dolfin/swig/fem/post.i

dolfin/swig/fem/pre.i

dolfin/swig/la/docstrings.i

dolfin/swig/la/pre.i

dolfin/swig/mesh/docstrings.i

dolfin/swig/mesh/post.i

dolfin/swig/modules/fem/dependencies.txt

dolfin/swig/modules/fem/module.i

dolfin/swig/shared_ptr_classes.i

site-packages/dolfin/__init__.py

site-packages/dolfin/compilemodules/swigimportinfo.py

site-packages/dolfin/fem/assembling.py

site-packages/dolfin/fem/projection.py

site-packages/dolfin/fem/solving.py

site-packages/dolfin/functions/function.py

site-packages/dolfin/mesh/meshes.py

test/codingstyle/test.py

test/regression/test.py

test/unit/function/cpp/Projection.h

test/unit/la/cpp/CMakeLists.txt

test/unit/la/cpp/forms/ReactionDiffusion.h

test/unit/la/cpp/forms/ReactionDiffusionAction.h

test/unit/mesh/cpp/CMakeLists.txt

Show diffs side-by-side

added added

removed removed

bench/fem/assembly/cpp/forms/Elasticity3D.h

bench/fem/assembly/cpp/forms/NSEMomentum3D.h

bench/fem/assembly/cpp/forms/Poisson2DP1.h

bench/fem/assembly/cpp/forms/Poisson2DP2.h

bench/fem/assembly/cpp/forms/Poisson2DP3.h

bench/fem/assembly/cpp/forms/StabStokes2D.h

bench/fem/assembly/cpp/forms/THStokes2D.h

bench/fem/convergence/cpp/forms/Poisson2D_1.h

bench/fem/convergence/cpp/forms/Poisson2D_2.h

bench/fem/convergence/cpp/forms/Poisson2D_3.h

bench/fem/convergence/cpp/forms/Poisson2D_4.h

bench/fem/convergence/cpp/forms/Poisson2D_5.h

bench/fem/convergence/cpp/forms/Poisson3D_1.h

bench/fem/convergence/cpp/forms/Poisson3D_2.h

bench/fem/convergence/cpp/forms/Poisson3D_3.h

bench/fem/convergence/cpp/forms/Poisson3D_4.h

bench/fem/convergence/cpp/forms/Poisson3D_5.h

bench/fem/multicore/cpp/NavierStokes.h

bench/fem/multicore/cpp/Poisson.h

bench/fem/speedup/cpp/CMakeLists.txt

bench/fem/speedup/cpp/Poisson.h

bench/function/evaluation/cpp/P1.h

demo/la/eigenvalue/cpp/StiffnessMatrix.h

demo/pde/biharmonic/cpp/Biharmonic.h

demo/pde/cahn-hilliard/cpp/CMakeLists.txt

demo/pde/cahn-hilliard/cpp/CahnHilliard2D.cpp

demo/pde/cahn-hilliard/cpp/CahnHilliard2D.h

demo/pde/cahn-hilliard/cpp/CahnHilliard3D.cpp

demo/pde/cahn-hilliard/cpp/CahnHilliard3D.h

demo/pde/hyperelasticity/cpp/HyperElasticity.h

demo/pde/hyperelasticity/cpp/main.cpp

demo/pde/mixed-poisson/cpp/MixedPoisson.h

demo/pde/navier-stokes/cpp/PressureUpdate.h

demo/pde/navier-stokes/cpp/TentativeVelocity.h

demo/pde/navier-stokes/cpp/VelocityUpdate.h

demo/pde/poisson/cpp/Poisson.h

demo/pde/poisson/cpp/main.cpp

demo/pde/stokes-iterative/cpp/Stokes.h

demo/pde/stokes-iterative/cpp/StokesPreconditioner.h

demo/undocumented/advection-diffusion/cpp/AdvectionDiffusion.h

demo/undocumented/advection-diffusion/cpp/Velocity.h

demo/undocumented/auto-adaptive-navier-stokes/cpp/AdaptiveNavierStokes.h

demo/undocumented/auto-adaptive-poisson/cpp/AdaptivePoisson.h

demo/undocumented/bcs/cpp/Poisson.h

demo/undocumented/bcs/cpp/main.cpp

demo/undocumented/block-matrix/cpp/StiffnessMatrix.h

demo/undocumented/conditional/cpp/Conditional.h

demo/undocumented/curl-curl/cpp/CurrentDensity.h

demo/undocumented/curl-curl/cpp/EddyCurrents.h

demo/undocumented/dg-advection-diffusion/cpp/AdvectionDiffusion.h

demo/undocumented/dg-advection-diffusion/cpp/Projection.h

demo/undocumented/dg-advection-diffusion/cpp/Velocity.h

demo/undocumented/dg-poisson/cpp/Poisson.h

demo/undocumented/elasticity/cpp/Elasticity.h

demo/undocumented/elasticity/cpp/main.cpp

demo/undocumented/elastodynamics/cpp/DG0_eps_xx.h

demo/undocumented/elastodynamics/cpp/ElastoDynamics.h

demo/undocumented/elastodynamics/cpp/main.cpp

demo/undocumented/eval/cpp/Projection.h

demo/undocumented/extrapolation/cpp/P1.h

demo/undocumented/extrapolation/cpp/P2.h

demo/undocumented/functional/cpp/EnergyNorm.h

demo/undocumented/lift-drag/cpp/Functionals.h

demo/undocumented/multidomain/cpp/MultiDomainPoisson.h

demo/undocumented/netgen/

demo/undocumented/netgen/cpp/

demo/undocumented/netgen/cpp/README

demo/undocumented/netgen/python/

demo/undocumented/netgen/python/demo_netgen.py

demo/undocumented/neumann-poisson/cpp/Poisson.h

demo/undocumented/nonlinear-poisson/cpp/NonlinearPoisson.h

demo/undocumented/nonmatching-interpolation/cpp/P1.h

demo/undocumented/nonmatching-interpolation/cpp/P3.h

demo/undocumented/nonmatching-projection/cpp/P1_projection.h

demo/undocumented/nonmatching-projection/cpp/P3.h

demo/undocumented/periodic/cpp/Poisson.h

demo/undocumented/periodic/cpp/main.cpp

demo/undocumented/poisson1D-in-2D/cpp/Poisson.h

demo/undocumented/poisson1D/cpp/Poisson.h

demo/undocumented/restriction/cpp/Poisson.h

demo/undocumented/singular/cpp/Poisson.h

demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.h

demo/undocumented/stokes-stabilized/cpp/Stokes.h

demo/undocumented/stokes-stabilized/cpp/main.cpp

demo/undocumented/stokes-taylor-hood/cpp/Stokes.h

demo/undocumented/stokes-taylor-hood/cpp/main.cpp

demo/undocumented/sym-dirichlet-bc/cpp/Poisson.h

demo/undocumented/waveguide/cpp/Forms.h

dolfin/CMakeLists.txt

dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp

dolfin/adaptivity/AdaptiveLinearVariationalSolver.h

dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp

dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.h

dolfin/adaptivity/ErrorControl.cpp

dolfin/adaptivity/ErrorControl.h

dolfin/adaptivity/GenericAdaptiveVariationalSolver.h

dolfin/adaptivity/adapt.cpp

dolfin/adaptivity/adaptivesolve.cpp

dolfin/adaptivity/adaptivesolve.h

dolfin/ale/Poisson1D.h

dolfin/ale/Poisson2D.h

dolfin/ale/Poisson3D.h

dolfin/common/Hierarchical.h

dolfin/common/MPI.h

dolfin/common/defines.cpp

dolfin/common/defines.h

dolfin/common/utils.h

dolfin/fem/AssemblerBase.cpp

dolfin/fem/BoundaryCondition.cpp

dolfin/fem/BoundaryCondition.h

dolfin/fem/ButcherScheme.cpp

dolfin/fem/ButcherScheme.h

dolfin/fem/DirichletBC.cpp

dolfin/fem/DirichletBC.h

dolfin/fem/DofMap.cpp

dolfin/fem/DofMapBuilder.cpp

dolfin/fem/DofMapBuilder.h

dolfin/fem/GenericDofMap.h

dolfin/fem/LinearVariationalProblem.cpp

dolfin/fem/LinearVariationalProblem.h

dolfin/fem/LinearVariationalSolver.cpp

dolfin/fem/NonlinearVariationalProblem.cpp

dolfin/fem/NonlinearVariationalProblem.h

dolfin/fem/NonlinearVariationalSolver.cpp

dolfin/fem/NonlinearVariationalSolver.h

dolfin/fem/RKSolver.cpp

dolfin/fem/SystemAssembler.cpp

dolfin/fem/SystemAssembler.h

dolfin/fem/assemble.cpp

dolfin/fem/assemble.h

dolfin/fem/dolfin_fem.h

dolfin/fem/solve.cpp

dolfin/fem/solve.h

dolfin/generation/CSGPrimitives2D.cpp

dolfin/generation/CSGPrimitives2D.h

dolfin/io/ExodusFile.cpp

dolfin/io/ExodusFile.h

dolfin/io/File.cpp

dolfin/la/GenericMatrix.cpp

dolfin/la/LinearSolver.h

dolfin/la/PETScMatrix.cpp

dolfin/la/PETScPreconditioner.cpp

dolfin/la/PaStiXLUSolver.cpp

dolfin/la/PaStiXLUSolver.h

dolfin/la/STLMatrix.cpp

dolfin/la/STLMatrix.h

dolfin/la/TensorLayout.cpp

dolfin/la/TensorLayout.h

dolfin/mesh/Mesh.cpp

dolfin/mesh/Mesh.h

dolfin/mesh/PeriodicBoundaryComputation.cpp

dolfin/swig/adaptivity/docstrings.i

dolfin/swig/fem/docstrings.i

dolfin/swig/fem/post.i

dolfin/swig/fem/pre.i

dolfin/swig/la/docstrings.i

dolfin/swig/la/pre.i

dolfin/swig/mesh/docstrings.i

dolfin/swig/mesh/post.i

dolfin/swig/modules/fem/dependencies.txt

dolfin/swig/modules/fem/module.i

dolfin/swig/shared_ptr_classes.i

site-packages/dolfin/__init__.py

site-packages/dolfin/compilemodules/swigimportinfo.py

site-packages/dolfin/fem/assembling.py

site-packages/dolfin/fem/projection.py

site-packages/dolfin/fem/solving.py

site-packages/dolfin/functions/function.py

site-packages/dolfin/mesh/meshes.py

site-packages/dolfin/mesh/netgen.py

test/codingstyle/test.py

test/regression/test.py

test/unit/function/cpp/Projection.h

test/unit/io/python/Exodus.py

test/unit/la/cpp/CMakeLists.txt

test/unit/la/cpp/forms/ReactionDiffusion.h

test/unit/la/cpp/forms/ReactionDiffusionAction.h

test/unit/mesh/cpp/CMakeLists.txt

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