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Committer:
hansonr
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Date:
2018-01-15 00:54:29 UTC
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Revision ID:
svn-v4:62be27d7-c70d-0410-b753-bb59b6ba1b27:trunk/Jmol:21797
Jmol.___JmolVersion="14.28.1"
new feature: WRITE CONTACT xxx.jvxl
- saves a JVXL file for a contact
- reload using ISOSURFACE xxx.jvxl, not CONTACT
new feature: write contact "cache://t.jvxl"
- saves a contact as a jvxl file in the cache
new feature: isosurface "cache://t.jvxl"
- loads an isosurface from a cached JVXL file
new feature: generalized use of cache://
- cache:// saves or retrieves files from the FileManager cache
- cleared upon ZAP
- for example, the following transfers a contact to an isosurface for saving to a PNGJ file
load =1eve
zoom {e20:a} 0
contact {e20:A} hbond
write contact cache://t.jvxl
isosurface cache://t.jvxl
contact delete
write t3.png as PNGJ
new feature: isosurface reads EBI density server files (BinaryCIF and CIF)
-- for example:
isosurface "https://www.ebi.ac.uk/pdbe/densities/x-ray/1eve/box/-3.434,55.646996,59.195/7.479,70.943,74.928?space=cartesian&encoding=bcif"
isosurface "https://www.ebi.ac.uk/pdbe/densities/x-ray/1eve/box/-3.434,55.646996,59.195/7.479,70.943,74.928?space=cartesian&encoding=cif"
new feature: Jmol automatically uses EBI density server BinaryCIF files when "within" keyword is used.
-- for example:
load =1eve
display e20
zoom {displayed} 0
isosurface within 4 {e20:A} "=1eve"
-- allows testing of non-binary CIF electron density files using .cif:
isosurface within 4 {e20:A} "=1eve.cif"
bug fix: loading, modifying, and resaving a PNGJ file fails in Java
bug fix: JavaScript JSmol improperly saves a PNGJ file within a PNGJ file