~pefarrell/dolfin-adjoint/fix-ode : changes

~pefarrell/dolfin-adjoint/fix-ode » Changes from revision 755

From Revision 755 to 736

Rev	Summary	Authors	Date
755	Add FitzHugh-Nagumo model. Not working yet because it depend... Add FitzHugh-Nagumo model. Not working yet because it depends on some library I don't have.	Patrick Farrell	10 years ago
754	A little more Expression tidying A little more Expression tidying	James R. Maddison	10 years ago
753	Minor bugfixes and test tweaks Minor bugfixes and test tweaks - Bugfix for rare reproducibility issue with split pre-assembled bilinear forms - Bugfix for dolfin_adjoint_timestepping with FEniCS 1.0 - Bugfix for TimeFunctional s with initial time level dependencies and disk checkpointing - Bugfix to single layer QG model (FEMQUOD) configuration - Fixes to the navier_stokes_fe test for FEniCS 1.0 - Tidy up use of Expression s - Remove some colour from standard output, emit DOLFIN warnings	James R. Maddison	10 years ago
752	Make sure KrylovSolver has a set_transpose_nullspace before ... Make sure KrylovSolver has a set_transpose_nullspace before we ever try to call it.	Patrick Farrell	10 years ago
751	Weaken the scipy.optimize version requirement to 0.11 (befor... Weaken the scipy.optimize version requirement to 0.11 (before was 0.12) as long as the user does not use basin hopping.	Simon Funke	10 years ago
750	Get rid of some unnecessary imports, and we now depend on sc... Get rid of some unnecessary imports, and we now depend on scipy as well in the Debian package.	Patrick Farrell	10 years ago
749	Bump the version number in the changelog Bump the version number in the changelog	Patrick Farrell	10 years ago
748	The basinhopping optimisation algorithm requires scipy.optim... The basinhopping optimisation algorithm requires scipy.optimize >= 0.12. This commit updates the deprecated warning message in case an old scipy version is installed. Thanks for Johannes and Gabriel for the bug report.	Simon Funke	10 years ago
747	add support for the global optimisation algorithm "basin hop... add support for the global optimisation algorithm "basin hopping"	Simon Funke	10 years ago
746	Clear the expressions cache in adj_reset. Clear the expressions cache in adj_reset.	Patrick Farrell	10 years ago
745	Check if the KrylovSolver has set_transpose_nullspace before... Check if the KrylovSolver has set_transpose_nullspace before calling it.	Patrick Farrell	10 years ago
744	Add Johan's magical options to make the replay work Add Johan's magical options to make the replay work	Patrick Farrell	10 years ago
743	Relax some test tolerances Relax some test tolerances	James R. Maddison	10 years ago
742	VTU I/O workaround for mixed function spaces with FEniCS 1.0 VTU I/O workaround for mixed function spaces with FEniCS 1.0	James R. Maddison	10 years ago
741	TimeFunctional bugfix TimeFunctional bugfix	James R. Maddison	10 years ago
740	A rewrite of how expressions are handled. Rather than keepin... A rewrite of how expressions are handled. Rather than keeping track of the values of expression attributes, now we only keep track of the user-set keys. When the expression is frozen, we use that set of keys to fetch the values from the expression. This is because the value of an expression attribute can change in ways other than Expression.__setattr__ (such as when the PointIntegralSolver updates its time Constant).	Patrick Farrell	10 years ago
739	A little initial guess tidying A little initial guess tidying	James R. Maddison	10 years ago
738	Disable optimisation in this test (should not have been comm... Disable optimisation in this test (should not have been committed)	James R. Maddison	10 years ago
737	Make matrix compression optional, and port the dolfin-adjoin... Make matrix compression optional, and port the dolfin-adjoint N-S test to the timestepping library	James R. Maddison	10 years ago
736	Fix a bug reported by Martin Alnaes in email. Fix a bug reported by Martin Alnaes in email.	Patrick Farrell	10 years ago

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