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|
! Copyright (C) 2006 Imperial College London and others.
!
! Please see the AUTHORS file in the main source directory for a full list
! of copyright holders.
!
! Prof. C Pain
! Applied Modelling and Computation Group
! Department of Earth Science and Engineering
! Imperial College London
!
! amcgsoftware@imperial.ac.uk
!
! This library is free software; you can redistribute it and/or
! modify it under the terms of the GNU Lesser General Public
! License as published by the Free Software Foundation,
! version 2.1 of the License.
!
! This library is distributed in the hope that it will be useful,
! but WITHOUT ANY WARRANTY; without even the implied warranty of
! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! Lesser General Public License for more details.
!
! You should have received a copy of the GNU Lesser General Public
! License along with this library; if not, write to the Free Software
! Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
! USA
#include "fdebug.h"
module hybridized_helmholtz
use spud
use fields
use state_module
use FLDebug
use populate_state_module
use write_state_module
use populate_state_module
use timeloop_utilities
use sparsity_patterns_meshes
use sparse_matrices_fields
use solvers
use diagnostic_variables
use diagnostic_fields_wrapper
use assemble_cmc
use FUtils, only : real_vector, real_matrix
use global_parameters, only: option_path_len
use vector_tools, only: solve
use manifold_projections
implicit none
contains
subroutine solve_hybridized_helmholtz(state,D_rhs,U_Rhs,&
&D_out,U_out,&
&compute_cartesian,&
&check_continuity,output_dense,&
&projection,poisson,u_rhs_local,&
&solver_option_path)
! Subroutine to solve hybridized helmholtz equation
! If D_rhs (scalar pressure field) is present, then solve:
! <w,u> + <w,fu^\perp> - g <div w,d> + <<[w],d>> = <w,U_rhs>
! <\phi,d> + <\phi,div u> = <\phi, D_rhs>
! <<\gamma, [u]>> = 0
! (i.e. for unit testing)
! otherwise solve:
! <w,u> + dt*theta*<w,fu^\perp> - dt*theta*g <div w,d> + <<[w],d>> =
! -dt*<w f(u^n)^\perp> + dt*g*<div w, d^n>
! <\phi,\eta> + dt*theta*<\phi,div u> = <\ph
! <<\gamma, [u]>> = 0
! and then updating
! u = u^n + dt*u, d = d^n + dt*d
! (i.e. for solving wave equation)
implicit none
type(state_type), intent(inout) :: state
type(scalar_field), intent(in), optional :: D_rhs
type(vector_field), intent(inout), optional :: U_rhs
type(scalar_field), intent(inout), optional :: D_out
type(vector_field), intent(inout), optional :: U_out
logical, intent(in), optional :: compute_cartesian, &
&check_continuity,output_dense, projection,poisson
logical, intent(in), optional :: u_rhs_local !means u_rhs is in local coords
character(len=OPTION_PATH_LEN), intent(in), optional :: solver_option_path
!
type(vector_field), pointer :: X, U, down, U_cart
type(scalar_field), pointer :: D,f, lambda_nc
type(scalar_field) :: lambda
type(scalar_field), target :: lambda_rhs, u_cpt
type(csr_sparsity) :: lambda_sparsity, continuity_sparsity
type(csr_matrix) :: lambda_mat, continuity_block_mat,continuity_block_mat1
type(block_csr_matrix) :: continuity_mat
type(mesh_type), pointer :: lambda_mesh
real :: D0, dt, g, theta
integer :: ele,i1, stat, dim1
logical :: l_compute_cartesian,l_check_continuity, l_output_dense
real, dimension(:,:), allocatable :: lambda_mat_dense
character(len=OPTION_PATH_LEN) :: constraint_option_string
ewrite(1,*) ' subroutine solve_hybridized_helmholtz('
l_compute_cartesian = .false.
if(present(compute_cartesian)) l_compute_cartesian = compute_cartesian
if(present(check_continuity)) l_check_continuity = check_continuity
if(l_check_continuity) l_compute_cartesian = .true.
l_output_dense = .false.
if(present(output_dense)) l_output_dense = output_dense
!Pull the fields out of state
D=>extract_scalar_field(state, "LayerThickness")
f=>extract_scalar_field(state, "Coriolis")
U=>extract_vector_field(state, "LocalVelocity")
X=>extract_vector_field(state, "Coordinate")
down=>extract_vector_field(state, "GravityDirection")
lambda_mesh=>extract_mesh(state, "VelocityMeshTrace")
call allocate(lambda,lambda_mesh,name="LagrangeMultiplier")
U_cart => extract_vector_field(state, "Velocity")
!construct/extract sparsities
lambda_sparsity=get_csr_sparsity_firstorder(state, lambda%mesh, lambda&
&%mesh)
continuity_sparsity=get_csr_sparsity_firstorder(state, u%mesh, lambda%mesh)
!allocate matrices
call allocate(lambda_mat,lambda_sparsity)
call zero(lambda_mat)
call allocate(continuity_mat,continuity_sparsity,(/U%dim,1/))
call zero(continuity_mat)
!allocate hybridized RHS
call allocate(lambda_rhs,lambda%mesh,"LambdaRHS")
call zero(lambda_rhs)
!get parameters
call get_option("/physical_parameters/gravity/magnitude", g)
!theta
call get_option("/material_phase::Fluid/scalar_field::LayerThickness/&
&prognostic/temporal_discretisation/theta",theta)
!D0
call get_option("/material_phase::Fluid/scalar_field::LayerThickness/&
&p&
&rognostic/mean_layer_thickness",D0)
call get_option("/timestepping/timestep", dt)
!Assemble matrices
do ele = 1, ele_count(D)
call assemble_hybridized_helmholtz_ele(D,f,U,X,down,ele, &
&g,dt,theta,D0,lambda_mat=lambda_mat,&
&lambda_rhs=lambda_rhs,D_rhs=D_rhs,U_rhs=U_rhs,&
&continuity_mat=continuity_mat,&
&projection=projection,poisson=poisson,&
&u_rhs_local=u_rhs_local)
end do
ewrite(1,*) 'LAMBDARHS', maxval(abs(lambda_rhs%val))
!Solve the equations
if(present(solver_option_path)) then
call petsc_solve(lambda,lambda_mat,lambda_rhs,&
option_path=solver_option_path)
else
call petsc_solve(lambda,lambda_mat,lambda_rhs,&
option_path=trim(U_cart%mesh%option_path)//&
&"/from_mesh/constraint_type")
end if
ewrite(1,*) 'LAMBDA', maxval(abs(lambda%val))
!Reconstruct U and D from lambda
do ele = 1, ele_count(D)
call reconstruct_u_d_ele(D,f,U,X,down,ele, &
&g,dt,theta,D0,D_rhs=D_rhs,U_rhs=U_rhs,lambda=lambda,&
&D_out=D_out,U_out=U_out,&
&projection=projection,poisson=poisson,&
&u_rhs_local=u_rhs_local)
end do
if(l_output_dense) then
allocate(lambda_mat_dense(node_count(lambda),node_count(lambda)))
lambda_mat_dense = dense(lambda_mat)
ewrite(1,*) '-----------'
do i1 = 1, node_count(lambda)
ewrite(1,*) lambda_mat_dense(i1,:)
end do
ewrite(1,*) '-----------'
end if
if(l_compute_cartesian) then
U_cart => extract_vector_field(state, "Velocity")
if(present(U_out)) then
call project_local_to_cartesian(X,U_out,U_cart)
else
call project_local_to_cartesian(X,U,U_cart)
end if
end if
if(l_check_continuity) then
ewrite(1,*) 'Checking continuity'
call zero(lambda_rhs)
do dim1 = 1,U%dim
if(present(U_out)) then
u_cpt = extract_scalar_field(U_out,dim1)
else
u_cpt = extract_scalar_field(U,dim1)
end if
continuity_block_mat = block(continuity_mat,dim1,1)
call mult_T_addto(lambda_rhs,continuity_block_mat,u_cpt)
ewrite(1,*) 'U, lambda',&
&maxval(u_cpt%val), maxval(abs(lambda_rhs%val))
end do
ewrite(1,*)'JUMPS MIN:MAX',minval(lambda_rhs%val),&
&maxval(lambda_rhs%val)
assert(maxval(abs(lambda_rhs%val))<1.0e-10)
ewrite(1,*) 'D MAXABS', maxval(abs(D%val))
do ele = 1, ele_count(U)
call check_continuity_ele(U_cart,X,ele)
end do
end if
call deallocate(lambda_mat)
call deallocate(lambda_rhs)
call deallocate(lambda)
ewrite(1,*) 'END subroutine solve_hybridized_helmholtz'
end subroutine solve_hybridized_helmholtz
subroutine assemble_hybridized_helmholtz_ele(D,f,U,X,down,ele, &
g,dt,theta,D0,lambda_mat,lambda_rhs,U_rhs,D_rhs,&
continuity_mat,projection,poisson,u_rhs_local)
!subroutine to assemble hybridized helmholtz equation.
!For assembly, must provide:
! lambda_mat,lambda_rhs
!For assembly, may provide:
! D_rhs and U_rhs
! If neither are present, D_rhs reconstructed from D and U
! as part of an implicit timestepping algorithm
implicit none
type(scalar_field), intent(in) :: D,f
type(scalar_field), intent(inout) :: lambda_rhs
type(vector_field), intent(in) :: U,X,down
type(vector_field), intent(in), optional :: U_rhs
type(scalar_field), intent(in), optional :: D_rhs
integer, intent(in) :: ele
real, intent(in) :: g,dt,theta,D0
type(csr_matrix), intent(inout) :: lambda_mat
type(block_csr_matrix), intent(inout), optional :: continuity_mat
logical, intent(in), optional :: projection, poisson,u_rhs_local
!
real, allocatable, dimension(:,:),target :: &
&l_continuity_mat, l_continuity_mat2
real, allocatable, dimension(:,:) :: helmholtz_loc_mat
real, allocatable, dimension(:,:,:) :: continuity_face_mat
real, allocatable, dimension(:,:) :: scalar_continuity_face_mat
integer :: ni, face
integer, dimension(:), pointer :: neigh
real, dimension(ele_loc(lambda_rhs,ele)) :: lambda_rhs_loc,lambda_rhs_loc2
real, dimension(:),allocatable,target :: Rhs_loc
real, dimension(:,:), allocatable :: local_solver_matrix, local_solver_rhs
type(element_type) :: U_shape
integer :: stat, d_start, d_end, dim1, mdim, uloc,dloc, lloc
integer, dimension(mesh_dim(U)) :: U_start, U_end
type(real_vector), dimension(mesh_dim(U)) :: rhs_u_ptr
real, dimension(:), pointer :: rhs_d_ptr
type(real_matrix), dimension(mesh_dim(U)) :: &
& continuity_mat_u_ptr
logical :: have_constraint
integer :: constraint_choice, n_constraints, constraints_start
!Get some sizes
lloc = ele_loc(lambda_rhs,ele)
mdim = mesh_dim(U)
uloc = ele_loc(U,ele)
dloc = ele_loc(d,ele)
U_shape = ele_shape(U,ele)
have_constraint = &
&have_option(trim(U%mesh%option_path)//"/from_mesh/constraint_type")
n_constraints = 0
if(have_constraint) then
n_constraints = ele_n_constraints(U,ele)
end if
allocate(rhs_loc(2*uloc+dloc+n_constraints))
allocate(local_solver_matrix(mdim*uloc+dloc+n_constraints,&
mdim*uloc+dloc+n_constraints))
allocate(local_solver_rhs(mdim*uloc+dloc,mdim*uloc+dloc))
!Calculate indices in a vector containing all the U and D dofs in
!element ele, First the u1 components, then the u2 components, then the
!D components are stored.
do dim1 = 1, mdim
u_start(dim1) = uloc*(dim1-1)+1
u_end(dim1) = uloc*dim1
end do
d_start = uloc*mdim + 1
d_end = uloc*mdim+dloc
!Get pointers to different parts of rhs_loc and l_continuity_mat
do dim1 = 1, mdim
rhs_u_ptr(dim1)%ptr => rhs_loc(u_start(dim1):u_end(dim1))
end do
rhs_d_ptr => rhs_loc(d_start:d_end)
allocate(l_continuity_mat(2*uloc+dloc+n_constraints,lloc))
do dim1= 1,mdim
continuity_mat_u_ptr(dim1)%ptr => &
& l_continuity_mat(u_start(dim1):u_end(dim1),:)
end do
! ( M C -L)(u) (v)
! ( -C^T N 0 )(h) = (j)
! ( L^T 0 0 )(l) (0)
!
! (u) (M C)^{-1}(v) (M C)^{-1}(L)
! (h) = (-C^T N) (j) + (-C^T N) (0)(l)
! so
! (M C)^{-1}(L) (M C)^{-1}(v)
! (L^T 0)(-C^T N) (0)=-(L^T 0)(-C^T N) (j)
!Get the local_solver matrix that obtains U and D from Lambda on the
!boundaries
call get_local_solver(local_solver_matrix,U,X,down,D,f,ele,&
& g,dt,theta,D0,have_constraint,local_solver_rhs,&
projection)
!!!Construct the continuity matrix that multiplies lambda in
!!! the U equation
!allocate l_continuity_mat
l_continuity_mat = 0.
!get list of neighbours
neigh => ele_neigh(D,ele)
!calculate l_continuity_mat
do ni = 1, size(neigh)
face=ele_face(U, ele, neigh(ni))
allocate(continuity_face_mat(mdim,face_loc(U,face)&
&,face_loc(lambda_rhs,face)))
continuity_face_mat = 0.
call get_continuity_face_mat(continuity_face_mat,face,&
U,lambda_rhs)
do dim1 = 1, mdim
continuity_mat_u_ptr(dim1)%ptr(face_local_nodes(U,face),&
face_local_nodes(lambda_rhs,face))=&
continuity_mat_u_ptr(dim1)%ptr(face_local_nodes(U,face),&
face_local_nodes(lambda_rhs,face))+&
continuity_face_mat(dim1,:,:)
end do
if(present(continuity_mat)) then
do dim1 = 1, mdim
call addto(continuity_mat,dim1,1,face_global_nodes(U,face)&
&,face_global_nodes(lambda_rhs,face),&
&continuity_face_mat(dim1,:,:))
end do
end if
deallocate(continuity_face_mat)
end do
!compute l_continuity_mat2 = inverse(local_solver)*l_continuity_mat
allocate(l_continuity_mat2(uloc*2+dloc+n_constraints,lloc))
l_continuity_mat2 = l_continuity_mat
call solve(local_solver_matrix,l_continuity_mat2)
!compute helmholtz_loc_mat
allocate(helmholtz_loc_mat(lloc,lloc))
helmholtz_loc_mat = matmul(transpose(l_continuity_mat),l_continuity_mat2)
!construct lambda_rhs
rhs_loc=0.
lambda_rhs_loc = 0.
call assemble_rhs_ele(Rhs_loc,D,U,X,ele,D_rhs,U_rhs,u_rhs_local)
if(.not.(present(d_rhs).or.present(u_rhs)))then
assert(.not.present_and_true(projection))
assert(.not.present_and_true(poisson))
rhs_loc(1:d_end) = matmul(local_solver_rhs,rhs_loc(1:d_end))
end if
call solve(local_solver_matrix,Rhs_loc)
lambda_rhs_loc = -matmul(transpose(l_continuity_mat),&
&Rhs_loc)
!insert lambda_rhs_loc into lambda_rhs
call addto(lambda_rhs,ele_nodes(lambda_rhs,ele),lambda_rhs_loc)
!insert helmholtz_loc_mat into global lambda matrix
call addto(lambda_mat,ele_nodes(lambda_rhs,ele),&
ele_nodes(lambda_rhs,ele),helmholtz_loc_mat)
end subroutine assemble_hybridized_helmholtz_ele
subroutine reconstruct_U_d_ele(D,f,U,X,down,ele, &
g,dt,theta,D0,U_rhs,D_rhs,lambda,&
&D_out,U_out,projection,poisson,u_rhs_local)
!subroutine to reconstruct U and D having solved for lambda
implicit none
type(scalar_field), intent(in) :: f,lambda
type(scalar_field), intent(inout) :: D
type(vector_field), intent(inout) :: U
type(vector_field), intent(in) :: X,down
type(scalar_field), intent(in), optional :: D_rhs
type(vector_field), intent(in), optional :: U_rhs
type(scalar_field), intent(inout), optional :: D_out
type(vector_field), intent(inout), optional :: U_out
integer, intent(in) :: ele
real, intent(in) :: g,dt,theta,D0
logical, intent(in), optional :: projection, poisson,u_rhs_local
!
real, allocatable, dimension(:,:,:) :: continuity_face_mat
integer :: ni, face
integer, dimension(:), pointer :: neigh
type(element_type) :: U_shape
integer :: d_start, d_end, dim1, mdim, uloc,dloc,lloc
integer, dimension(mesh_dim(U)) :: U_start, U_end
type(real_vector), dimension(mesh_dim(U)) :: rhs_u_ptr
real, dimension(:), pointer :: rhs_d_ptr
type(real_matrix), dimension(mesh_dim(U)) :: &
& continuity_mat_u_ptr
real, dimension(ele_loc(lambda,ele)) :: lambda_val
real, dimension(:),allocatable,target :: Rhs_loc
real, dimension(:,:), allocatable :: local_solver_matrix, local_solver_rhs
real, dimension(mesh_dim(U),ele_loc(U,ele)) :: U_solved
real, dimension(ele_loc(D,ele)) :: D_solved
logical :: have_constraint
integer :: n_constraints, i1
type(constraints_type), pointer :: constraints
real :: constraint_check
!Get some sizes
lloc = ele_loc(lambda,ele)
mdim = mesh_dim(U)
uloc = ele_loc(U,ele)
dloc = ele_loc(d,ele)
U_shape = ele_shape(U,ele)
have_constraint = &
&have_option(trim(U%mesh%option_path)//"/from_mesh/constraint_type")
n_constraints = 0
if(have_constraint) then
n_constraints = ele_n_constraints(U,ele)
end if
allocate(rhs_loc(2*uloc+dloc+n_constraints))
rhs_loc = 0.
allocate(local_solver_matrix(mdim*uloc+dloc+n_constraints,&
mdim*uloc+dloc+n_constraints))
allocate(local_solver_rhs(mdim*uloc+dloc,mdim*uloc+dloc))
!Calculate indices in a vector containing all the U and D dofs in
!element ele, First the u1 components, then the u2 components, then the
!D components are stored.
d_start = uloc*mdim + 1
d_end = uloc*mdim+dloc
do dim1 = 1, mdim
u_start(dim1) = uloc*(dim1-1)+1
u_end(dim1) = uloc*dim1
end do
!Get pointers to different parts of rhs_loc and l_continuity_mat
do dim1 = 1, mdim
rhs_u_ptr(dim1)%ptr => rhs_loc(u_start(dim1):u_end(dim1))
end do
!Get the local_solver matrix that obtains U and D from Lambda on the
!boundaries
call get_local_solver(local_solver_matrix,U,X,down,D,f,ele,&
& g,dt,theta,D0,have_constraint,&
& local_solver_rhs=local_solver_rhs,projection=projection,&
& poisson=poisson)
!Construct the rhs sources for U from lambda
call assemble_rhs_ele(Rhs_loc,D,U,X,ele,D_rhs,U_rhs,U_rhs_local)
if(.not.(present(d_rhs).or.present(u_rhs)))then
assert(.not.present_and_true(projection))
assert(.not.present_and_true(poisson))
rhs_loc(1:d_end) = matmul(local_solver_rhs,rhs_loc(1:d_end))
end if
lambda_val = ele_val(lambda,ele)
!get list of neighbours
neigh => ele_neigh(D,ele)
!calculate l_continuity_mat
do ni = 1, size(neigh)
face=ele_face(U, ele, neigh(ni))
allocate(continuity_face_mat(mdim,face_loc(U,face),&
face_loc(lambda,face)))
continuity_face_mat = 0.
call get_continuity_face_mat(continuity_face_mat,face,&
U,lambda)
do dim1 = 1, mdim
rhs_u_ptr(dim1)%ptr(face_local_nodes(U,face)) = &
& rhs_u_ptr(dim1)%ptr(face_local_nodes(U,face)) + &
& matmul(continuity_face_mat(dim1,:,:),&
& face_val(lambda,face))
end do
deallocate(continuity_face_mat)
end do
! ( M C -L)(u) (0)
! ( -C^T N 0 )(h) = (j)
! ( L^T 0 0 )(l) (0)
!
! (u) (M C)^{-1}(0) (M C)^{-1}(L)
! (h) = (-C^T N) (j) + (-C^T N) (0)(l)
call solve(local_solver_matrix,Rhs_loc)
rhs_loc = matmul(local_solver_matrix,rhs_loc)
call solve(local_solver_matrix,Rhs_loc)
do dim1 = 1, mdim
U_solved(dim1,:) = rhs_loc(u_start(dim1):u_end(dim1))
if(.not.(present_and_true(poisson))) then
if(present(U_out)) then
call set(U_out,dim1,ele_nodes(u,ele),u_solved(dim1,:))
else
call set(U,dim1,ele_nodes(u,ele),u_solved(dim1,:))
end if
end if
end do
D_solved = rhs_loc(d_start:d_end)
if(.not.(present_and_true(projection))) then
if(present(D_out)) then
call set(D_out,ele_nodes(d,ele),D_solved)
else
call set(D,ele_nodes(d,ele),D_solved)
end if
end if
!check that the constraints are satisfied
if(have_constraint) then
constraints => U%mesh%shape%constraints
do i1 = 1, constraints%n_constraints
constraint_check = 0.
do dim1 = 1, mdim
constraint_check = constraint_check + &
& sum(U_solved(dim1,:)*constraints%orthogonal(i1,:,dim1))
end do
if(abs(constraint_check)>1.0e-8) then
ewrite(1,*) 'Constraint check', constraint_check
FLAbort('Constraint not enforced')
end if
end do
end if
end subroutine reconstruct_U_d_ele
subroutine get_local_solver(local_solver_matrix,U,X,down,D,f,ele,&
& g,dt,theta,D0,have_constraint, &
& local_solver_rhs,projection,poisson)
!Subroutine to get the matrix and rhs for obtaining U and D within
!element ele from the lagrange multipliers on the boundaries.
!This matrix-vector system is referred to as the "local solver" in the
!literature e.g.
!Cockburn et al, Unified hybridization of discontinuous Galerkin, mixed
! and continuous Galerkin methods for second order elliptic problems,
! SIAM J. Numer. Anal., 2009
implicit none
!If projection is present and true, set dt to zero and just project U
!into div-conforming space
real, intent(in) :: g,dt,theta,D0
type(vector_field), intent(in) :: U,X,down
type(scalar_field), intent(in) :: D,f
integer, intent(in) :: ele
real, dimension(:,:)&
&, intent(inout) :: local_solver_matrix
real, dimension(:,:)&
&, intent(inout), optional :: local_solver_rhs
logical, intent(in), optional :: projection, poisson
logical, intent(in) :: have_constraint
!
real, dimension(mesh_dim(U), X%dim, ele_ngi(U,ele)) :: J
real, dimension(ele_ngi(x,ele)) :: f_gi
real, dimension(X%dim, ele_ngi(X,ele)) :: up_gi
real, dimension(X%dim) :: up_vec
real, dimension(mesh_dim(U),ele_loc(U,ele),ele_loc(D,ele)) :: l_div_mat
real, dimension(mesh_dim(U), mesh_dim(U), ele_ngi(U,ele)) :: Metric, &
&Metricf
real, dimension(X%dim, X%dim, ele_ngi(U,ele)) :: rot
real, dimension(mesh_dim(U),mesh_dim(U),ele_loc(U,ele),ele_loc(U&
&,ele)) :: l_u_mat
integer :: mdim, uloc,dloc,dim1,dim2,gi
type(element_type) :: u_shape, d_shape
real, dimension(ele_ngi(D,ele)) :: detwei, detJ
integer, dimension(:), pointer :: D_ele,U_ele
integer :: d_start, d_end
integer, dimension(mesh_dim(U)) :: U_start, U_end
type(constraints_type), pointer :: constraints
integer :: i1, c_start, c_end
real :: l_dt
if(present_and_true(projection)) then
l_dt = 0.
else
l_dt = dt
end if
mdim = mesh_dim(U)
uloc = ele_loc(U,ele)
dloc = ele_loc(d,ele)
d_start = uloc*2 + 1
d_end = uloc*2+dloc
do dim1 = 1, mdim
u_start(dim1) = uloc*(dim1-1)+1
u_end(dim1) = uloc*dim1
end do
local_solver_matrix = 0.
if(present(local_solver_rhs)) then
local_solver_rhs = 0.
end if
u_shape=ele_shape(u, ele)
D_shape=ele_shape(d, ele)
D_ele => ele_nodes(D, ele)
U_ele => ele_nodes(U, ele)
if(present_and_true(projection)) then
f_gi = 0.
else
f_gi = ele_val_at_quad(f,ele)
end if
up_gi = -ele_val_at_quad(down,ele)
call get_up_gi(X,ele,up_gi)
!J, detJ is needed for Piola transform
!detwei is needed for pressure mass matrix
call compute_jacobian(ele_val(X,ele), ele_shape(X,ele), J=J, &
detwei=detwei, detJ=detJ)
!----construct local solver
!metrics for velocity mass and coriolis matrices
do gi=1, ele_ngi(U,ele)
rot(1,:,gi)=(/0.,-up_gi(3,gi),up_gi(2,gi)/)
rot(2,:,gi)=(/up_gi(3,gi),0.,-up_gi(1,gi)/)
rot(3,:,gi)=(/-up_gi(2,gi),up_gi(1,gi),0./)
end do
do gi=1,ele_ngi(U,ele)
Metric(:,:,gi)=matmul(J(:,:,gi), transpose(J(:,:,gi)))/detJ(gi)
Metricf(:,:,gi)=matmul(J(:,:,gi), &
matmul(f_gi(gi)*rot(:,:,gi), transpose(J(:,:,gi))))/detJ(gi)
end do
!<w,u> + dt*theta*<w,fu^\perp> - g*dt*theta<div w,h> = -<w.n,l>
!dt*theta*<\phi,div u> + D_0<\phi,h> = 0
!pressure mass matrix (done in global coordinates)
local_solver_matrix(d_start:d_end,d_start:d_end)=&
&shape_shape(d_shape,d_shape,detwei)
if(present(local_solver_rhs)) then
local_solver_rhs(d_start:d_end,d_start:d_end) = &
shape_shape(d_shape,d_shape,detwei)
end if
!divergence matrix (done in local coordinates)
l_div_mat = dshape_shape(u_shape%dn,d_shape,&
&D_shape%quadrature%weight)
do dim1 = 1, mdim
!pressure gradient term [integrated by parts so minus sign]
local_solver_matrix(u_start(dim1):u_end(dim1),d_start:d_end)=&
& -g*l_dt*theta*l_div_mat(dim1,:,:)
if(present(local_solver_rhs)) then
local_solver_rhs(u_start(dim1):u_end(dim1),d_start:d_end)=&
& -g*(theta-1.0)*l_dt*l_div_mat(dim1,:,:)
end if
!divergence continuity term
local_solver_matrix(d_start:d_end,u_start(dim1):u_end(dim1))=&
& d0*l_dt*theta*transpose(l_div_mat(dim1,:,:))
if(present(local_solver_rhs)) then
local_solver_rhs(d_start:d_end,u_start(dim1):u_end(dim1))=&
& d0*(theta-1.0)*l_dt*transpose(l_div_mat(dim1,:,:))
end if
end do
!velocity mass matrix and Coriolis matrix (done in local coordinates)
l_u_mat = shape_shape_tensor(u_shape, u_shape, &
u_shape%quadrature%weight, Metric+l_dt*theta*Metricf)
do dim1 = 1, mdim
do dim2 = 1, mdim
local_solver_matrix(u_start(dim1):u_end(dim1),&
u_start(dim2):u_end(dim2))=&
& l_u_mat(dim1,dim2,:,:)
end do
end do
if(present(local_solver_rhs)) then
l_u_mat = shape_shape_tensor(u_shape, u_shape, &
u_shape%quadrature%weight, &
Metric+(theta-1.0)*l_dt*Metricf)
do dim1 = 1, mdim
do dim2 = 1, mdim
local_solver_rhs(u_start(dim1):u_end(dim1),&
u_start(dim2):u_end(dim2))=&
& l_u_mat(dim1,dim2,:,:)
end do
end do
end if
if(have_constraint) then
constraints => U%mesh%shape%constraints
c_start = d_end+1
c_end = d_end + constraints%n_constraints
do i1 = 1, constraints%n_constraints
do dim1 = 1, mdim
local_solver_matrix(d_end+i1,u_start(dim1):u_end(dim1))=&
&constraints%orthogonal(i1,:,dim1)
local_solver_matrix(u_start(dim1):u_end(dim1),d_end+i1)=&
&constraints%orthogonal(i1,:,dim1)
end do
end do
end if
end subroutine get_local_solver
subroutine get_up_gi(X,ele,up_gi,orientation)
!subroutine to replace up_gi with a normal to the surface
!with the same orientation
implicit none
type(vector_field), intent(in) :: X
integer, intent(in) :: ele
real, dimension(X%dim,ele_ngi(X,ele)), intent(inout) :: up_gi
integer, intent(out), optional :: orientation
!
real, dimension(mesh_dim(X), X%dim, ele_ngi(X,ele)) :: J
integer :: gi
real, dimension(X%dim,ele_ngi(X,ele)) :: normal_gi
real, dimension(ele_ngi(X,ele)) :: orientation_gi
real :: norm
call compute_jacobian(ele_val(X,ele), ele_shape(X,ele), J=J)
select case(mesh_dim(X))
case (2)
!Coriolis only makes sense for 2d surfaces embedded in 3d
do gi = 1, ele_ngi(X,ele)
normal_gi(:,gi) = cross_product(J(1,:,gi),J(2,:,gi))
norm = sqrt(sum(normal_gi(:,gi)**2))
normal_gi(:,gi) = normal_gi(:,gi)/norm
end do
do gi = 1, ele_ngi(X,ele)
orientation_gi(gi) = dot_product(normal_gi(:,gi),up_gi(:,gi))
end do
if(any(abs(orientation_gi-orientation_gi(1))>1.0e-8)) then
FLAbort('Nasty geometry problem')
end if
do gi = 1, ele_ngi(X,ele)
up_gi(:,gi) = normal_gi(:,gi)*orientation_gi(gi)
end do
if(present(orientation)) then
if(orientation_gi(1)>0.0) then
orientation = 1
else
orientation = -1
end if
end if
case default
FLAbort('not implemented')
end select
end subroutine get_up_gi
function get_orientation(X_val, up) result (orientation)
!function compares the orientation of the element with the
!up direction
implicit none
real, dimension(:,:), intent(in) :: X_val !(dim,loc)
real, dimension(:,:), intent(in) :: up
integer :: orientation
!
real, dimension(size(X_val,1)) :: t1,t2
real, dimension(size(X_val,1)) :: crossprod
integer :: gi
! if elements are triangles:
if(size(X_val,2)==3) then
t1 = X_val(:,2)-X_val(:,1)
t2 = X_val(:,3)-X_val(:,1)
crossprod = cross_product(t1,t2)
if(dot_product(crossprod,up(:,1))>0.0) then
do gi = 1, size(up,2)
if(dot_product(crossprod,up(:,gi))<0.0) then
FLAbort('Something nasty with down direction')
end if
end do
orientation = 1
else
do gi = 1, size(up,2)
if(dot_product(crossprod,up(:,gi))>0.0) then
FLAbort('Something nasty with down direction')
end if
end do
orientation = -1
end if
else
FLAbort('Haven''t sorted out quads yet.')
end if
end function get_orientation
subroutine get_continuity_face_mat(continuity_face_mat,face,&
U,lambda)
! integral is done in local coordinates to avoid computing
! dx/dxi on face (using properties of the Piola transform)
! \int_f [[w]]\lambda dS
implicit none
integer, intent(in) :: face
type(scalar_field), intent(in) :: lambda
type(vector_field), intent(in) :: U
real, dimension(mesh_dim(U),face_loc(U,face),face_loc(lambda,face)),&
&intent(inout) :: continuity_face_mat
!
real, dimension(U%dim, face_ngi(U, face)) :: n1
real :: weight
type(element_type), pointer :: U_face_shape,lambda_face_shape
real, dimension(face_ngi(U,face)) :: detwei
U_face_shape=>face_shape(U, face)
lambda_face_shape=>face_shape(lambda, face)
!Get normal in local coordinates
call get_local_normal(n1,weight,U,local_face_number(U%mesh,face))
detwei = weight*U_face_shape%quadrature%weight
continuity_face_mat = shape_shape_vector(&
U_face_shape,lambda_face_shape,detwei,n1)
end subroutine get_continuity_face_mat
subroutine get_scalar_continuity_face_mat(continuity_face_mat,face,&
lambda)
! integral is done in local coordinates to avoid computing
! dx/dxi on face (using properties of the Piola transform)
! \int_f [[w]]\lambda dS
implicit none
integer, intent(in) :: face
type(scalar_field), intent(in) :: lambda
real, dimension(face_loc(lambda,face),face_loc(lambda,face)),&
&intent(inout) :: continuity_face_mat
!
real :: weight
type(element_type), pointer :: lambda_face_shape
real, dimension(face_ngi(lambda,face)) :: detwei
lambda_face_shape=>face_shape(lambda, face)
!Integral is taken on one of the edges of the local 2D element
!This edge must be transformed to the local 1D element
!to do numerical integration, with the following weight factors
if(face==3) then
weight = sqrt(2.)
else
weight = 1.0
end if
!Get normal in local coordinates
detwei = weight*lambda_face_shape%quadrature%weight
continuity_face_mat = shape_shape(&
lambda_face_shape,lambda_face_shape,detwei)
end subroutine get_scalar_continuity_face_mat
subroutine get_local_normal(norm,weight,U,face)
!Function returns normal to face on local 2D element
implicit none
type(vector_field), intent(in) :: U
integer, intent(in) :: face
real, dimension(U%dim, face_ngi(U,face)), intent(out) :: norm
real, intent(out) :: weight
integer :: i
select case(U%mesh%shape%numbering%family)
case (FAMILY_SIMPLEX)
if(U%dim==1) then
if(face==1) then
forall(i=1:face_ngi(U,face)) norm(1,i)=1.
else if(face==2) then
forall(i=1:face_ngi(U,face)) norm(1,i)=-1.
else
FLAbort('Funny face?')
end if
weight = 1.0
else if(U%dim==2) then
if(face==1) then
forall(i=1:face_ngi(U,face)) norm(1:2,i)=(/-1.,0./)
else if(face==2) then
forall(i=1:face_ngi(U,face)) norm(1:2,i)=(/0.,-1./)
else if(face==3) then
forall(i=1:face_ngi(U,face)) norm(1:2,i)=(/1/sqrt(2.),1&
&/sqrt(2.)/)
else
FLAbort('Funny face?')
end if
!Integral is taken on one of the edges of the local 2D element
!This edge must be transformed to the local 1D element
!to do numerical integration, with the following weight factors
if(face==3) then
weight = sqrt(2.)
else
weight = 1.0
end if
else
FLAbort('Dimension not supported.')
end if
case (FAMILY_CUBE)
if(U%dim==2) then
if(face==1) then
forall(i=1:face_ngi(U,face)) norm(1:2,i)=(/-1.,0./)
else if(face==2) then
forall(i=1:face_ngi(U,face)) norm(1:2,i)=(/ 1.,0./)
else if(face==3) then
forall(i=1:face_ngi(U,face)) norm(1:2,i)=(/0.,-1./)
else if(face==4) then
forall(i=1:face_ngi(U,face)) norm(1:2,i)=(/0.,1./)
else
FLAbort('Funny face?')
end if
weight = 1.0
else
FLAbort('Dimension not supported.')
end if
end select
end subroutine get_local_normal
subroutine compute_cartesian_ele(U_cart,U,X,ele)
implicit none
type(vector_field), intent(inout) :: U_cart
type(vector_field), intent(in) :: U, X
integer, intent(in) :: ele
!
real, dimension(ele_loc(U,ele),ele_loc(U,ele)) :: l_u_mat
real, dimension(X%dim,ele_loc(U,ele)) :: u_rhs
real, dimension(mesh_dim(U), ele_ngi(U,ele)) :: local_u_gi
real, dimension(X%dim, ele_ngi(U,ele)) :: cart_u_gi
integer :: dim1
type(element_type) :: u_shape
integer, dimension(mesh_dim(U)) :: U_start, U_end
integer, dimension(:), pointer :: U_ele
integer :: mdim, uloc, gi
real, dimension(ele_ngi(U,ele)) :: detwei, detJ
real, dimension(mesh_dim(U), X%dim, ele_ngi(U,ele)) :: J
mdim = mesh_dim(U)
uloc = ele_loc(U,ele)
do dim1 = 1, mdim
u_start(dim1) = uloc*(dim1-1)+1
u_end(dim1) = uloc+dim1
end do
U_ele => ele_nodes(U, ele)
u_shape=ele_shape(u, ele)
call compute_jacobian(ele_val(X,ele), ele_shape(X,ele), J=J, &
detwei=detwei,detJ=detJ)
local_u_gi = ele_val_at_quad(U,ele)
do gi = 1, ele_ngi(U,ele)
cart_u_gi(:,gi) = matmul(transpose(J(:,:,gi)),local_u_gi(:,gi))/detJ(gi)
end do
u_rhs = shape_vector_rhs(u_shape,cart_u_gi,detwei)
l_u_mat = shape_shape(u_shape, u_shape, detwei)
do dim1 = 1, mdim
call solve(l_u_mat,u_rhs(dim1,:))
end do
do dim1 = 1, U_cart%dim
call set(U_cart,dim1,u_ele,u_rhs(dim1,:))
end do
end subroutine compute_cartesian_ele
subroutine check_continuity_local_ele(U,ele)
implicit none
type(vector_field), intent(in) :: U
integer, intent(in) :: ele
!
integer, dimension(:), pointer :: neigh
integer :: ni,face,ele2,face2
neigh => ele_neigh(U,ele)
do ni = 1, size(neigh)
ele2 = neigh(ni)
face = ele_face(U,ele,ele2)
if(ele2>0) then
face2 = ele_face(U,ele2,ele)
else
face2 = -1
end if
call check_continuity_local_face(U,ele,ele2,face,face2)
end do
end subroutine check_continuity_local_ele
subroutine check_continuity_local_face(U,ele,ele2,face,face2)
implicit none
integer, intent(in) :: face, face2,ele,ele2
type(vector_field), intent(in) :: U
!
real, dimension(U%dim, face_ngi(U, face)) :: n1,n2,u1,u2
real :: weight, jump
!Get normal in local coordinates
call get_local_normal(n1,weight,U,local_face_number(U%mesh,face))
call get_local_normal(n2,weight,U,local_face_number(U%mesh,face2))
u1 = face_val_at_quad(U,face)
u2 = face_val_at_quad(U,face2)
jump = maxval(abs(sum(u1*n1+u2*n2,1)))
ewrite(1,*) jump
assert(jump<1.0e-8)
end subroutine check_continuity_local_face
subroutine check_continuity_ele(U_cart,X,ele)
implicit none
type(vector_field), intent(in) :: U_cart,X
integer, intent(in) :: ele
!
integer, dimension(:), pointer :: neigh
integer :: ni,face,ele2,face2
neigh => ele_neigh(U_cart,ele)
do ni = 1, size(neigh)
ele2 = neigh(ni)
face = ele_face(U_cart,ele,ele2)
if(ele2>0) then
face2 = ele_face(U_cart,ele2,ele)
else
face2 = -1
end if
call check_continuity_face(U_cart,X,ele,ele2,face,face2)
end do
end subroutine check_continuity_ele
subroutine check_continuity_face(U_cart,X,ele,ele2,face,face2)
!subroutine to check the continuity of normal component
!of velocity at quadrature points
implicit none
type(vector_field), intent(in) :: U_cart,X
integer, intent(in) :: face,face2,ele,ele2
real, dimension(X%dim, face_ngi(U_cart, face)) :: n1,n2
real, dimension(X%dim, face_ngi(U_cart, face)) :: u1,u2,x1
real, dimension(face_ngi(U_cart, face)) :: jump_at_quad
integer :: dim1
!
u1 = face_val_at_quad(U_cart,face)
x1 = face_val_at_quad(X,face)
if(ele2>0) then
u2 = face_val_at_quad(U_cart,face2)
else
u2 = 0.
end if
n1 = get_face_normal_manifold(X,ele,face)
if(ele2>0) then
n2 = get_face_normal_manifold(X,ele2,face2)
else
n2 = -n1
end if
jump_at_quad = sum(n1*u1+n2*u2,1)
if(maxval(abs(jump_at_quad))>1.0e-8) then
ewrite(1,*) 'Jump at quadrature face, face2 =', jump_at_quad
ewrite(1,*) 'ELE = ',ele,ele2
do dim1 = 1, X%dim
ewrite(1,*) 'normal',dim1,n1(dim1,:)
ewrite(1,*) 'normal',dim1,n2(dim1,:)
ewrite(1,*) 'X',dim1,x1(dim1,:)
end do
ewrite(1,*) 'n cpt1',sum(n1*u1,1)
ewrite(1,*) 'n cpt2',sum(n2*u2,1)
ewrite(1,*) jump_at_quad/max(maxval(abs(u1)),maxval(abs(u2)))
FLAbort('stopping because of jumps')
end if
end subroutine check_continuity_face
function get_face_normal_manifold(X,ele,face) result (normal)
implicit none
type(vector_field), intent(in) :: X
integer, intent(in) :: ele, face
real, dimension(X%dim,face_ngi(X,face)) :: normal
!
real, dimension(ele_ngi(X,ele)) :: detwei
real, dimension(mesh_dim(X), X%dim, ele_ngi(X,ele)) :: J
real, dimension(face_ngi(X,face)) :: detwei_f
real, dimension(mesh_dim(X)-1, X%dim, face_ngi(X,face)) :: J_f
real, dimension(ele_loc(X,ele),ele_loc(X,ele)) :: X_mass_mat
real, dimension(mesh_dim(X), X%dim, ele_loc(X,ele)) :: J_loc
real, dimension(ele_loc(X,ele)) :: J_loc_rhs
real, dimension(mesh_dim(X), X%dim, face_ngi(X,face)) :: J_face_gi
integer :: dim1, dim2, gi
real, dimension(X%dim) :: ele_normal_gi, edge_tangent_gi, X_mid_ele,&
&X_mid_face
type(element_type) :: X_shape, X_face_shape
real, dimension(X%dim,ele_loc(X,ele)) :: X_ele
real, dimension(X%dim,face_loc(X,face)) :: X_face
call compute_jacobian(ele_val(X,ele),ele_shape(X,ele), J=J, &
detwei=detwei)
call compute_jacobian(face_val(X,face),face_Shape(X,face), J=J_f, &
detwei=detwei_f)
!Jacobian can be expanded without error in X function space
!so we map it to the basis function DOFs by projection
X_shape = ele_shape(X,ele)
X_face_shape = face_shape(X,face)
X_mass_mat = shape_shape(X_shape,X_shape,detwei)
do dim1 = 1, mesh_dim(X)
do dim2 = 1, X%dim
J_loc_rhs = shape_rhs(X_shape,J(dim1,dim2,:)*detwei)
call solve(X_mass_mat,J_loc_rhs)
J_loc(dim1,dim2,:) = J_loc_rhs
end do
end do
do dim1 = 1, mesh_dim(X)
do dim2 = 1, X%dim
J_face_gi(dim1,dim2,:) = &
& matmul(transpose(X_face_shape%n),&
J_loc(dim1,dim2,face_local_nodes(X,face)))
end do
end do
X_mid_ele = sum(ele_val(X,ele),2)/size(ele_val(X,ele),2)
X_mid_face = sum(face_val(X,face),2)/size(face_val(X,face),2)
select case(X%dim)
case (3)
select case (mesh_dim(X))
case (2)
do gi = 1, face_ngi(X,face)
!Get normal to element e on face quad points
ele_normal_gi = cross_product(J_face_gi(1,:,gi),&
&J_face_gi(2,:,gi))
ele_normal_gi = ele_normal_gi/(norm2(ele_normal_gi))
!Get tangent to face f
edge_tangent_gi = J_f(1,:,gi)
edge_tangent_gi = edge_tangent_gi/norm2(edge_tangent_gi)
!Compute normal to face f in manifold
normal(:,gi) = cross_product(ele_normal_gi,edge_tangent_gi)
if(dot_product(normal(:,gi),X_mid_face-X_mid_ele)<0) then
normal(:,gi)=-normal(:,gi)
end if
end do
case default
FLAbort('dimension combination not implemented')
end select
case default
FLAbort('dimension combination not implemented')
end select
end function get_face_normal_manifold
subroutine reconstruct_lambda_nc(lambda,lambda_nc,X,ele)
type(scalar_field), intent(in) :: lambda
type(scalar_field), intent(inout) :: lambda_nc
type(vector_field), intent(in) :: X
integer, intent(in) :: ele
!
real, dimension(ele_loc(lambda_nc,ele)) :: nc_rhs
type(element_type), pointer :: lambda_nc_shape
integer, dimension(:), pointer :: neigh
real, dimension(mesh_dim(X), X%dim, ele_ngi(X,ele)) :: J
real, dimension(ele_ngi(lambda,ele)) :: detwei
integer :: ni,ele2,face
real, dimension(ele_loc(lambda_nc,ele),ele_loc(lambda_nc,ele)) :: &
& l_mass_mat
nc_rhs = 0.
lambda_nc_shape => ele_shape(lambda_nc,ele)
neigh => ele_neigh(lambda,ele)
l_mass_mat = 0.
do ni = 1, size(neigh)
ele2 = neigh(ni)
face = ele_face(X,ele,ele2)
call get_nc_rhs_face(nc_rhs,l_mass_mat,lambda,lambda_nc,X,face)
end do
call compute_jacobian(ele_val(X,ele), ele_shape(X,ele), J=J, &
detwei=detwei)
call solve(l_mass_mat,nc_rhs)
call set(lambda_nc,ele_nodes(lambda_nc,ele),nc_rhs)
end subroutine reconstruct_lambda_nc
subroutine get_nc_rhs_face(nc_rhs,l_mass_mat,&
lambda,lambda_nc,X,face)
implicit none
real, intent(inout), dimension(:) :: nc_rhs
real, intent(inout), dimension(:,:) :: l_mass_mat
type(scalar_field), intent(in) :: lambda, lambda_nc
type(vector_field), intent(in) :: X
integer, intent(in) :: face
!
real, dimension(face_ngi(lambda,face)) :: detwei
type(element_type), pointer :: lambda_nc_face_shape
real, dimension(X%dim,face_loc(X,face)) :: x_loc
lambda_nc_face_shape => face_shape(lambda_nc,face)
X_loc = face_val(X,face)
call transform_facet_to_physical(X,face,detwei_f=detwei)
nc_rhs(face_local_nodes(lambda_nc,face)) = &
&nc_rhs(face_local_nodes(lambda_nc,face)) &
&+ shape_rhs(lambda_nc_face_shape,face_val_at_quad(lambda,face)*detwei)
l_mass_mat(face_local_nodes(lambda_nc,face), &
&face_local_nodes(lambda_nc,face)) = &
&l_mass_mat(face_local_nodes(lambda_nc,face), &
&face_local_nodes(lambda_nc,face)) + &
&shape_shape(lambda_nc_face_shape,lambda_nc_face_shape,detwei)
end subroutine get_nc_rhs_face
subroutine assemble_rhs_ele(Rhs_loc,D,U,X,ele,D_rhs,U_rhs,u_rhs_local)
implicit none
integer, intent(in) :: ele
type(scalar_field), intent(in), optional, target :: D_rhs
type(vector_field), intent(in), optional, target :: U_rhs
type(vector_field), intent(in) :: X,U
type(scalar_field), intent(in) :: D
real, dimension(:), &
&intent(inout) :: Rhs_loc
logical, intent(in), optional :: u_rhs_local
!
real, dimension(mesh_dim(X), X%dim, ele_ngi(X,ele)) :: J
real, dimension(mesh_dim(U),ele_loc(U,ele)) :: u_rhs_loc
real, allocatable, dimension(:,:) :: u_cart_quad
real, dimension(mesh_dim(U),ele_ngi(X,ele)) :: u_local_quad
integer :: d_start, d_end, dim1, mdim, uloc,dloc, gi
integer, dimension(mesh_dim(U)) :: U_start, U_end
type(element_type) :: u_shape
real, dimension(ele_ngi(D,ele)) :: detwei, detJ
logical :: have_d_rhs,have_u_rhs
type(scalar_field), pointer :: l_d_rhs
type(vector_field), pointer :: l_u_rhs
real, dimension(mesh_dim(U), mesh_dim(U)) :: Metric
!Get some sizes
mdim = mesh_dim(U)
uloc = ele_loc(U,ele)
dloc = ele_loc(d,ele)
U_shape = ele_shape(U,ele)
!Calculate indices in a vector containing all the U and D dofs in
!element ele, First the u1 components, then the u2 components, then the
!D components are stored.
d_start = uloc*mdim + 1
d_end = uloc*mdim+dloc
do dim1 = 1, mdim
u_start(dim1) = uloc*(dim1-1)+1
u_end(dim1) = uloc*dim1
end do
if(.not.(present(D_rhs).or.present(u_rhs))) then
!We are in timestepping mode.
rhs_loc(d_start:d_end) = ele_val(D,ele)
u_rhs_loc = ele_val(U,ele)
do dim1 = 1, mdim
rhs_loc(u_start(dim1):u_end(dim1)) = &
& U_rhs_loc(dim1,:)
end do
else
have_d_rhs = present(d_rhs)
have_u_rhs = present(u_rhs)
if(have_d_rhs) l_d_rhs => d_rhs
if(have_u_rhs) l_u_rhs => u_rhs
call compute_jacobian(ele_val(X,ele), ele_shape(X,ele), J=J, &
detJ=detJ,detwei=detwei)
Rhs_loc = 0.
if(have_d_rhs) then
Rhs_loc(d_start:d_end) = shape_rhs(ele_shape(D,ele),&
&ele_val_at_quad(l_D_rhs,ele)*detwei)
end if
if(have_u_rhs) then
if(present_and_true(u_rhs_local)) then
u_local_quad = ele_val_at_quad(l_u_rhs,ele)
do gi=1,ele_ngi(U,ele)
Metric=matmul(J(:,:,gi), transpose(J(:,:,gi)))&
&/detJ(gi)
u_local_quad(:,gi) = matmul(Metric,u_local_quad(:,gi))
end do
else
allocate(u_cart_quad(l_U_rhs%dim,ele_ngi(X,ele)))
u_cart_quad = ele_val_at_quad(l_u_rhs,ele)
do gi = 1, ele_ngi(D,ele)
!Don't divide by detJ as we can use weight instead of detwei
u_local_quad(:,gi) = matmul(J(:,:,gi)&
&,u_cart_quad(:,gi))
end do
end if
U_rhs_loc = shape_vector_rhs(u_shape,&
u_local_quad,u_shape%quadrature%weight)
do dim1 = 1, mdim
Rhs_loc(u_start(dim1):u_end(dim1)) = &
& U_rhs_loc(dim1,:)
end do
end if
end if
end subroutine assemble_rhs_ele
subroutine check_divergence_ele(U,D,D_rhs,X,ele)
implicit none
type(vector_field), intent(in) :: U, X
type(scalar_field), intent(in) :: D, D_rhs
integer, intent(in) :: ele
!
real, dimension(ele_ngi(D,ele)) :: detwei, detJ
real, dimension(mesh_dim(X), X%dim, ele_ngi(X,ele)) :: J
integer :: dim1
real, dimension(ele_ngi(X,ele)) :: div
real, dimension(U%dim, ele_loc(U,ele)) :: U_loc
type(element_type) :: u_shape, d_shape
real, dimension(ele_loc(D,ele)) :: Div_loc
real, dimension(mesh_dim(U),ele_loc(U,ele),ele_loc(D,ele)) :: l_div_mat
real, dimension(ele_loc(D,ele),ele_loc(D,ele)) :: d_mass_mat
!
call compute_jacobian(ele_val(X,ele), ele_shape(X,ele), J=J, &
detJ=detJ,detwei=detwei)
u_shape = ele_shape(U,ele)
d_shape = ele_shape(D,ele)
U_loc = ele_val(U,ele)
div = 0.
do dim1 = 1, U%dim
div = div + &
& matmul(U_loc(dim1,:),u_shape%dn(:,:,dim1))/detJ
end do
l_div_mat = dshape_shape(u_shape%dn,d_shape,&
&D_shape%quadrature%weight)
div_loc = 0.
do dim1 = 1, U%dim
div_loc = div_loc + matmul(transpose(l_div_mat(dim1,:,:))&
&,U_loc(dim1,:))
end do
d_mass_mat = shape_shape(d_shape,d_shape,detwei)
call solve(d_mass_mat,div_loc)
!ewrite(1,*) 'div_loc', div_loc
!ewrite(1,*) 'div', div
end subroutine check_divergence_ele
subroutine compute_energy_hybridized(state,energy)
implicit none
type(state_type), intent(inout) :: state
real, intent(inout) :: energy
!
type(scalar_field), pointer :: D
type(vector_field), pointer :: u,X
integer :: ele
real :: old_energy,g,d0
!get parameters
call get_option("/physical_parameters/gravity/magnitude", g)
call get_option("/material_phase::Fluid/scalar_field::LayerThickness/p&
&rognostic/mean_layer_thickness",D0)
U=>extract_vector_field(state, "Velocity")
D => extract_scalar_field(state, "LayerThickness")
X=>extract_vector_field(state, "Coordinate")
old_energy = energy
energy = 0.
do ele = 1, element_count(X)
call compute_energy_ele(energy,U,D,X,D0,g,ele)
end do
ewrite(1,*) 'Energy:= ', energy
ewrite(1,*) 'Change in energy:= ', energy-old_energy
end subroutine compute_energy_hybridized
subroutine compute_energy_ele(energy,U,D,X,D0,g,ele)
implicit none
real, intent(inout) :: energy
type(vector_field), intent(in) :: U,X
type(scalar_field), intent(in) :: D
integer, intent(in) :: ele
real, intent(in) :: D0,g
!
real, dimension(mesh_dim(X), X%dim, ele_ngi(X,ele)) :: J
real, dimension(ele_ngi(D,ele)) :: detwei
type(element_type) :: d_shape, u_shape, x_shape
real, dimension(ele_loc(U,ele),ele_loc(U,ele)) :: u_mass
real, dimension(ele_loc(D,ele),ele_loc(D,ele)) :: d_mass
real, dimension(u%dim,ele_loc(U,ele)) :: U_val
real, dimension(ele_loc(D,ele)) :: D_val
real, dimension(X%dim,ele_loc(X,ele)) :: X_val
integer :: dim1
U_val = ele_val(U,ele)
D_val = ele_val(D,ele)
X_val = ele_val(X,ele)
u_shape = ele_shape(u,ele)
d_shape = ele_shape(d,ele)
x_shape = ele_shape(X,ele)
call compute_jacobian(x_val,x_shape, J=J, &
detwei=detwei)
u_mass = shape_shape(u_shape,u_shape,detwei)
d_mass = shape_shape(d_shape,d_shape,detwei)
!kinetic energy
do dim1 = 1, u%dim
energy = energy + D0*dot_product(U_val(dim1,:),&
&matmul(u_mass,U_val(dim1,:)))
end do
energy = energy + g*dot_product(D_val,&
&matmul(D_mass,D_val))
end subroutine compute_energy_ele
subroutine set_velocity_from_geostrophic_balance_hybridized(&
&state)
implicit none
type(state_type), intent(inout) :: state
!
type(scalar_field), pointer :: D,psi,f
type(scalar_field) :: D_rhs
type(vector_field), pointer :: U_local,down,X, U_cart
type(vector_field) :: Coriolis_term, Balance_eqn, tmp_field
integer :: ele,dim1
real :: g
logical :: elliptic_method
D=>extract_scalar_field(state, "LayerThickness")
psi=>extract_scalar_field(state, "Streamfunction")
f=>extract_scalar_field(state, "Coriolis")
U_local=>extract_vector_field(state, "LocalVelocity")
U_cart=>extract_vector_field(state, "Velocity")
X=>extract_vector_field(state, "Coordinate")
down=>extract_vector_field(state, "GravityDirection")
call get_option("/physical_parameters/gravity/magnitude", g)
call allocate(tmp_field,mesh_dim(U_local), U_local%mesh, "tmp_field")
call allocate(D_rhs,D%mesh,'BalancedSolverRHS')
call allocate(Coriolis_term,mesh_dim(U_local),&
U_local%mesh,"CoriolisTerm")
call allocate(balance_eqn,mesh_dim(D),u_local%mesh,'BalancedEquation')
!STAGE 1: Set velocity from streamfunction
do ele = 1, element_count(D)
call set_local_velocity_from_streamfunction_ele(&
&U_local,psi,down,X,ele)
end do
!STAGE 1a: verify that velocity projects is div-conforming
call project_local_to_cartesian(X,U_local,U_cart)
do ele = 1, ele_count(U_local)
call check_continuity_ele(U_cart,X,ele)
end do
!Stage 1b: verify that projection is idempotent
ewrite(1,*) 'CHECKING CONTINUOUS', maxval(abs(u_local%val))
call solve_hybridized_helmholtz(state,U_Rhs=U_local,&
&U_out=tmp_field,&
&compute_cartesian=.true.,&
&check_continuity=.true.,projection=.true.,&
&u_rhs_local=.true.)!verified that projection is idempotent
assert(maxval(abs(U_local%val-tmp_field%val))<1.0e-8)
elliptic_method = .false.
if(elliptic_method) then
!STAGE 2: Construct Coriolis term
call zero(Coriolis_term)
do ele = 1, element_count(D)
call set_coriolis_term_ele(Coriolis_term,f,down,U_local,X,ele)
end do!checked!signs checked
!STAGE 3: Project Coriolis term into div-conforming space
!debugging bits - checking if it works with cartesian instead
call project_local_to_cartesian(X,Coriolis_Term,U_cart)
call solve_hybridized_helmholtz(state,U_Rhs=U_cart,&
&U_out=tmp_field,&
&compute_cartesian=.true.,output_dense=.false.,&
&check_continuity=.true.,projection=.true.,&
&u_rhs_local=.false.)
ewrite(0,*) 'REMEMBER TO REMOVE DEBUGGING TESTS'
call solve_hybridized_helmholtz(state,U_Rhs=Coriolis_term,&
&U_out=tmp_field,&
&compute_cartesian=.true.,&
&check_continuity=.true.,projection=.true.,&
&u_rhs_local=.true.)!verified that projection is idempotent
!STAGE 4: Construct the RHS for the balanced layer depth equation
call zero(D_rhs)
do ele = 1, element_count(D)
call set_geostrophic_balance_rhs_ele(D_rhs,Coriolis_term,ele)
end do
!STAGE 5: Solve Poisson equation for the balanced layer depth
ewrite(0,*) 'REMEMBER ABOUT SETTING MEAN VALUE'
ewrite(0,*) trim(u_cart%option_path)
call solve_hybridized_helmholtz(state,D_rhs=D_rhs,&
&compute_cartesian=.false.,&
&check_continuity=.false.,Poisson=.true.,&
&solver_option_path=trim(u_cart%option_path)//'/prognostic/initial_condition::WholeMesh/balanced')
!STAGE 6: Check if we have a balanced solution
!Can be done by projecting balance equation into div-conforming space
!and checking that it is equal to zero
!STAGE 6a: Project balance equation into DG space
do ele = 1, element_count(D)
call set_pressure_force_ele(balance_eqn,D,X,g,ele)
end do
call addto(balance_eqn,coriolis_term)
!STAGE 6b: Project balance equation into div-conforming space
call solve_hybridized_helmholtz(state,U_Rhs=balance_eqn,&
&U_out=balance_eqn,&
&compute_cartesian=.true.,&
&check_continuity=.true.,projection=.true.,&
&u_rhs_local=.true.)
do dim1 = 1, mesh_dim(D)
ewrite(1,*) 'Balance equation', maxval(abs(balance_eqn%val(dim1,:)))
assert(maxval(abs(balance_eqn%val(dim1,:)))<1.0e-8)
end do
else
!Project the streamfunction into pressure space
do ele = 1, element_count(D)
call project_streamfunction_for_balance_ele(D,psi,X,f,g,ele)
end do
ewrite(1,*) maxval(abs(D%val))
!debugging tests
call zero(Coriolis_term)
do ele = 1, element_count(D)
call set_coriolis_term_ele(Coriolis_term,f,down,U_local,X,ele)
end do
call zero(balance_eqn)
do ele = 1, element_count(D)
call set_pressure_force_ele(balance_eqn,D,X,g,ele)
end do
call addto(balance_eqn,coriolis_term,scale=1.0)
ewrite(1,*) 'CJC b4',maxval(abs(balance_eqn%val)),&
& maxval(abs(coriolis_term%val))
!Project balance equation into div-conforming space
call solve_hybridized_helmholtz(state,U_Rhs=balance_eqn,&
&U_out=balance_eqn,&
&compute_cartesian=.true.,&
&check_continuity=.true.,projection=.true.,&
&u_rhs_local=.true.)
do dim1 = 1, mesh_dim(D)
ewrite(1,*) 'Balance equation', maxval(abs(balance_eqn%val(dim1,:)))
assert(maxval(abs(balance_eqn%val(dim1,:)))<1.0e-8)
end do
end if
!Clean up after yourself
call deallocate(Coriolis_term)
call deallocate(D_rhs)
call deallocate(balance_eqn)
call deallocate(tmp_field)
end subroutine set_velocity_from_geostrophic_balance_hybridized
subroutine project_streamfunction_for_balance_ele(D,psi,X,f,g,ele)
implicit none
type(scalar_field), intent(in) :: psi,f
type(scalar_field), intent(inout) :: D
type(vector_field), intent(in) :: X
integer, intent(in) :: ele
real, intent(in) :: g
!
real, dimension(ele_loc(d,ele),ele_loc(d,ele)) :: d_mass
real, dimension(ele_loc(d,ele)) :: d_rhs
type(element_type) :: psi_shape, d_shape
real, dimension(ele_ngi(d,ele)) :: detwei, psi_quad,f_gi
real, dimension(mesh_dim(X), X%dim, ele_ngi(X,ele)) :: J
f_gi = ele_val_at_quad(f,ele)
psi_shape = ele_shape(psi,ele)
d_shape = ele_shape(d,ele)
psi_quad = ele_val_at_quad(psi,ele)
call compute_jacobian(ele_val(X,ele), ele_shape(X,ele), J=J, &
detwei=detwei)
d_rhs = shape_rhs(d_shape,detwei*psi_quad*f_gi/g)
d_mass = shape_shape(d_shape,d_shape,detwei)
call solve(d_mass,d_rhs)
call set(D,ele_nodes(D,ele),d_rhs)
end subroutine project_streamfunction_for_balance_ele
subroutine set_pressure_force_ele(force,D,X,g,ele)
implicit none
type(vector_field), intent(inout) :: force
type(scalar_field), intent(in) :: D
type(vector_field), intent(in) :: X
real, intent(in) :: g
integer, intent(in) :: ele
!
real, dimension(ele_ngi(D,ele)) :: D_gi
real, dimension(mesh_dim(D),ele_loc(force,ele)) :: &
& rhs_loc
real, dimension(ele_loc(force,ele),ele_loc(force,ele)) :: &
& l_mass_mat
integer :: dim1,dim2,gi,uloc
real, dimension(mesh_dim(force), X%dim, ele_ngi(force,ele)) :: J
real, dimension(ele_ngi(force,ele)) :: detJ
real, dimension(mesh_dim(force),mesh_dim(force),ele_ngi(force,ele))::&
&Metric
real, dimension(mesh_dim(force)*ele_loc(force,ele),&
mesh_dim(force)*ele_loc(force,ele)) :: l_u_mat
real, dimension(mesh_dim(force)*ele_loc(force,ele)) :: force_rhs
type(element_type) :: force_shape
uloc = ele_loc(force,ele)
force_shape = ele_shape(force,ele)
call compute_jacobian(ele_val(X,ele), ele_shape(X,ele), J=J, &
detJ=detJ)
do gi=1,ele_ngi(force,ele)
Metric(:,:,gi)=matmul(J(:,:,gi), transpose(J(:,:,gi)))/detJ(gi)
end do
D_gi = ele_val_at_quad(D,ele)
rhs_loc = -g*dshape_rhs(force%mesh%shape%dn,&
D_gi*D%mesh%shape%quadrature%weight)
l_mass_mat = shape_shape(ele_shape(force,ele),ele_shape(force,ele),&
&force%mesh%shape%quadrature%weight)
do dim1 = 1, mesh_dim(force)
force_rhs((dim1-1)*uloc+1:dim1*uloc) = rhs_loc(dim1,:)
end do
do dim1 = 1, mesh_dim(force)
do dim2 = 1, mesh_dim(force)
l_u_mat((dim1-1)*uloc+1:dim1*uloc,&
& (dim2-1)*uloc+1:dim2*uloc ) = &
& shape_shape(force_shape,force_shape,&
& force_shape%quadrature%weight*Metric(dim1,dim2,:))
end do
end do
call solve(l_u_mat,force_rhs)
do dim1= 1, mesh_dim(force)
call set(force,dim1,ele_nodes(force,ele),&
&force_rhs((dim1-1)*uloc+1:dim1*uloc))
end do
end subroutine set_pressure_force_ele
subroutine set_geostrophic_balance_rhs_ele(D_rhs,Coriolis_term,ele)
implicit none
type(scalar_field), intent(inout) :: D_rhs
type(vector_field), intent(in) :: Coriolis_term
integer, intent(in) :: ele
!
real, dimension(mesh_dim(Coriolis_term),ele_loc(Coriolis_term,ele)) :: &
& Coriolis_loc
real, dimension(ele_ngi(D_rhs,ele)) :: div_gi
real, dimension(ele_loc(D_rhs,ele)) :: D_rhs_loc
real, dimension(ele_loc(D_rhs,ele),ele_loc(D_rhs,ele)) :: d_mass
integer :: dim1
type(element_type) :: U_shape, D_shape
real :: g
!Computes the divergence of projected Coriolis term
!Can be done locally since d commutes with pullback
call get_option("/physical_parameters/gravity/magnitude", g)
U_shape = ele_shape(Coriolis_term,ele)
D_shape = ele_shape(D_rhs,ele)
Coriolis_loc = ele_val(Coriolis_term,ele)
div_gi = 0.
do dim1 = 1, mesh_dim(Coriolis_term)
div_gi = div_gi + matmul(transpose(U_shape%dn(:,:,dim1)),&
&Coriolis_loc(dim1,:))
end do
D_rhs_loc = shape_rhs(D_shape,div_gi*U_shape%quadrature%weight)
d_mass = shape_shape(d_shape,d_shape,d_shape%quadrature%weight)
call solve(d_mass,D_rhs_loc)
call set(D_rhs,ele_nodes(D_rhs,ele),-D_rhs_loc/g)
end subroutine set_geostrophic_balance_rhs_ele
subroutine set_coriolis_term_ele(Coriolis_term,f,down,U_local,X,ele)
implicit none
type(vector_field), intent(inout) :: Coriolis_term
type(vector_field), intent(in) :: U_local,X,down
type(scalar_field), intent(in) :: f
integer, intent(in) :: ele
!
real, dimension(ele_ngi(x,ele)) :: f_gi
real, dimension(X%dim, ele_ngi(X,ele)) :: up_gi
real, dimension(mesh_dim(U_local),mesh_dim(U_local),ele_ngi(U_local,ele))::&
&Metric, Metricf
real, dimension(mesh_dim(U_local), X%dim, ele_ngi(U_local,ele)) :: J
real, dimension(ele_ngi(U_local,ele)) :: detJ
real, dimension(X%dim, X%dim, ele_ngi(U_local,ele)) :: rot
real, dimension(mesh_dim(U_local)*ele_loc(U_local,ele),&
mesh_dim(U_local)*ele_loc(U_local,ele)) :: l_u_mat
real, dimension(mesh_dim(U_local)*ele_loc(U_local,ele)) :: coriolis_rhs
real, dimension(mesh_dim(U_local), ele_ngi(U_local,ele)) :: U_gi
real, dimension(mesh_dim(U_local), ele_ngi(U_local,ele)) :: coriolis_gi
real, dimension(X%dim) :: up_vec
integer :: dim1, dim2,uloc,gi
type(element_type) :: u_shape
uloc = ele_loc(u_local,ele)
u_shape = ele_shape(u_local,ele)
u_gi = ele_val_at_quad(u_local,ele)
f_gi = ele_val_at_quad(f,ele)
up_gi = -ele_val_at_quad(down,ele)
call get_up_gi(X,ele,up_gi)
coriolis_rhs = 0.
l_u_mat = 0.
!metrics for velocity mass and coriolis matrices
call compute_jacobian(ele_val(X,ele), ele_shape(X,ele), J=J, &
detJ=detJ)
do gi=1, ele_ngi(U_local,ele)
rot(1,:,gi)=(/0.,-up_gi(3,gi),up_gi(2,gi)/)
rot(2,:,gi)=(/up_gi(3,gi),0.,-up_gi(1,gi)/)
rot(3,:,gi)=(/-up_gi(2,gi),up_gi(1,gi),0./)
end do
do gi=1,ele_ngi(U_local,ele)
Metric(:,:,gi)=matmul(J(:,:,gi), transpose(J(:,:,gi)))/detJ(gi)
Metricf(:,:,gi)=matmul(J(:,:,gi), &
matmul(f_gi(gi)*rot(:,:,gi), transpose(J(:,:,gi))))/detJ(gi)
Coriolis_gi(:,gi) = matmul(Metricf(:,:,gi),u_gi(:,gi))
end do
!Coriolis term is evaluated in global coordinates [hence presence of
! metric terms] and projected into local velocity coordinates
do dim1 = 1, mesh_dim(U_local)
do dim2 = 1, mesh_dim(U_local)
l_u_mat((dim1-1)*uloc+1:dim1*uloc,&
& (dim2-1)*uloc+1:dim2*uloc ) = &
& shape_shape(u_shape,u_shape,&
& u_shape%quadrature%weight*Metric(dim1,dim2,:))
end do
coriolis_rhs((dim1-1)*uloc+1:dim1*uloc) = &
& shape_rhs(u_shape,Coriolis_gi(dim1,:)*u_shape%quadrature%weight)
end do
call solve(l_u_mat,coriolis_rhs)
do dim1= 1, mesh_dim(coriolis_term)
call set(coriolis_term,dim1,ele_nodes(Coriolis_term,ele),&
&Coriolis_rhs((dim1-1)*uloc+1:dim1*uloc))
end do
end subroutine set_coriolis_term_ele
subroutine set_local_velocity_from_streamfunction_ele(&
&U_local,psi,down,X,ele)
implicit none
type(vector_field), intent(inout) :: U_local
type(vector_field), intent(in) :: down,X
type(scalar_field), intent(in) :: psi
integer, intent(in) :: ele
!
real, dimension(ele_loc(psi,ele)) :: psi_loc
real, dimension(mesh_dim(psi),ele_ngi(psi,ele)) :: dpsi_gi
real, dimension(ele_ngi(psi,ele)) :: div_gi
real, dimension(mesh_dim(U_local),ele_loc(U_local,ele)) :: U_loc
real, dimension(ele_loc(U_local,ele),ele_loc(U_local,ele)) :: &
& l_mass_mat
type(element_type) :: u_shape, psi_shape
integer :: dim1,gi,uloc
real, dimension(X%dim, ele_ngi(X,ele)) :: up_gi
integer :: orientation
uloc = ele_loc(U_local,ele)
u_shape = ele_shape(U_local,ele)
psi_shape = ele_shape(psi,ele)
up_gi = -ele_val_at_quad(down,ele)
call get_up_gi(X,ele,up_gi,orientation)
!We can do everything in local coordinates since d commutes with pullback
!usual tricks: dpsi lives in the U space so we can do projection
l_mass_mat = shape_shape(u_shape,u_shape,U_shape%quadrature%weight)
!Streamfunction at node values
psi_loc = ele_val(psi,ele)
!Skew gradient of streamfunction at quadrature points
select case(mesh_dim(psi))
case (2)
forall(gi=1:ele_ngi(psi,ele))
dpsi_gi(1,gi) = -sum(psi_loc*psi_shape%dn(:,gi,2))
dpsi_gi(2,gi) = sum(psi_loc*psi_shape%dn(:,gi,1))
end forall
case default
FLAbort('Exterior derivative not implemented for given mesh dimension')
end select
dpsi_gi = orientation*dpsi_gi
U_loc = shape_vector_rhs(u_shape,dpsi_gi,U_shape%quadrature%weight)
do dim1 = 1, U_local%dim
call solve(l_mass_mat,U_loc(dim1,:))
call set(U_local,dim1,ele_nodes(U_local,ele),&
u_loc(dim1,:))
end do
!verify divergence-free-ness
div_gi = 0.
do gi = 1, ele_ngi(psi,ele)
do dim1 = 1, mesh_dim(psi)
div_gi(gi) = div_gi(gi) + sum(u_shape%dn(:,gi,dim1)*u_loc(dim1,:))
end do
end do
assert(maxval(abs(div_gi))<1.0e-8)
end subroutine set_local_velocity_from_streamfunction_ele
subroutine project_to_constrained_space(state,v_field)
!wrapper for projecting vector field to constrained space
implicit none
type(state_type), intent(inout) :: state
type(vector_field), intent(inout) :: v_field
call solve_hybridized_helmholtz(state,&
&U_rhs=v_field,&
&compute_cartesian=.true.,&
&check_continuity=.true.,projection=.true.,&
&u_rhs_local=.true.)
end subroutine project_to_constrained_space
end module hybridized_helmholtz
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