~tparkola/collatex/graphmlexport : revision 1023

Committer: Ronald Haentjens Dekker
Date: 2011-02-21 15:05:19 UTC
Revision ID: ronald.dekker@huygensinstituut.knaw.nl-20110221150519-fxyab7opybh1am2x

[RHD]
- Removed duplication between VariantGraphIndex and WitnessIndex
- Made WitnessIndex extends AbstractTokenIndex
- Removed obsolete WitnessIndex0 class
- Removed createWitnessIndex method from CollateXEngine (should not be public)
- Reorganized indexing tests
- Moved AlternativeTokenIndexMatcher and AlternativeWitnessIndex to todo package
- Removed obsolete TokenColumn class

files added:
collatex/src/main/java/eu/interedition/collatex2/todo/alternativeindexing

collatex/src/main/java/eu/interedition/collatex2/implementation/vg_alignment/ColumnToken.java

files renamed:
collatex/src/main/java/eu/interedition/collatex2/implementation/vg_alignment/AlternativeTokenIndexMatcher.java => collatex/src/main/java/eu/interedition/collatex2/todo/alternativeindexing/AlternativeTokenIndexMatcher.java

collatex/src/main/java/eu/interedition/collatex2/implementation/containers/witness/AlternativeWitnessIndex.java => collatex/src/main/java/eu/interedition/collatex2/todo/alternativeindexing/AlternativeWitnessIndex.java

collatex/src/test/java/eu/interedition/collatex2/implementation/vg_alignment/WitnessIndexTest.java => collatex/src/test/java/eu/interedition/collatex2/implementation/vg_alignment/AlternativeWitnessIndexTest.java

collatex/src/test/java/eu/interedition/collatex2/implementation/vg_alignment/IndexingTest.java => collatex/src/test/java/eu/interedition/collatex2/implementation/vg_alignment/WitnessIndexingTest.java

files modified:
collatex/src/main/java/eu/interedition/collatex2/implementation/CollateXEngine.java

collatex/src/main/java/eu/interedition/collatex2/implementation/containers/witness/WitnessIndex.java

~tparkola/collatex/graphmlexport

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