~ubuntu-branches/ubuntu/edgy/ncbi-tools6/edgy

/*   ncbilcl.h

* ===========================================================================

*

*                            PUBLIC DOMAIN NOTICE

*               National Center for Biotechnology Information

*

*  This software/database is a "United States Government Work" under the

*  terms of the United States Copyright Act.  It was written as part of

*  the author's official duties as a United States Government employee and

*  thus cannot be copyrighted.  This software/database is freely available

*  to the public for use. The National Library of Medicine and the U.S.

*  Government have not placed any restriction on its use or reproduction.

*

*  Although all reasonable efforts have been taken to ensure the accuracy

*  and reliability of the software and data, the NLM and the U.S.

*  Government do not and cannot warrant the performance or results that

*  may be obtained by using this software or data. The NLM and the U.S.

*  Government disclaim all warranties, express or implied, including

*  warranties of performance, merchantability or fitness for any particular

*  purpose.

*

*  Please cite the author in any work or product based on this material.

*

* ===========================================================================

*

* File Name:  ncbilcl.h

*

* Author:  Gish, Kans, Ostell, Schuler, Epstein, Vakatov

*

* Version Creation Date:   8/1/94

*

* $Revision: 6.9 $

*

* File Description:

*		system dependent header

*       version for Linux

*

* Modifications:

* --------------------------------------------------------------------------

* $Log: ncbilcl.lnx,v $

* Revision 6.9  2004/01/21 22:31:20  ucko

* Define PROC_X86_64 on x86-64 systems.

*

* Revision 6.8  2002/11/22 20:05:04  lavr

* Configure HAVE_STRDUP and HAVE_STRCASECMP

*

* Revision 6.7  2002/11/06 21:23:47  ucko

* Handle non-i386 platforms.

* Enable large file support here, to ensure consistency.

*

* Revision 6.6  2002/07/11 22:13:06  vakatov

* #define MMAP_AVAIL

*

* Revision 6.5  2002/07/11 19:26:31  ivanov

* Added macro HAVE_MADVISE

*

* Revision 6.4  2000/06/15 16:47:13  beloslyu

* fixes for new RedHat6.2

*

* Revision 6.3  2000/02/10 16:36:32  vakatov

* Added _SVID_SOURCE

*

* Revision 6.2  1999/07/12 05:50:49  vakatov

* Avoid redefinition of #_REENTRANT

*

* Revision 6.1  1998/12/10 17:04:07  vakatov

* Fixed to compile under LINUX(Red Hat 2.XX, gcc, with POSIX threads)

*

* Revision 6.0  1997/08/25 18:16:01  madden

* Revision changed to 6.0

*

* Revision 5.1  1996/06/10 17:41:33  epstein

* added SYSV_IPC_AVAIL per Warren Gish

* ==========================================================================

*/

#ifndef _NCBILCL_

#define _NCBILCL_

/* PLATFORM DEFINITION FOR Linux */

#define COMP_SYSV

#define OS_UNIX

#define OS_UNIX_LINUX

#if defined(__alpha__) || #cpu(alpha) || #machine(alpha)

#define PROC_ALPHA

#elif defined(__arm__) || #cpu(arm) || #machine(arm)

#define PROC_ARM /* ? (only occurrence) */

#elif defined(__hppa__) || #cpu(hppa) || #machine(hppa)

#define PROC_HPPA

#elif defined(__i386__) || #cpu(i386) || #machine(i386)

#define PROC_I80X86

#elif defined(__ia64__) || #cpu(ia64) || #machine(ia64)

#define PROC_IA64 /* ? */

#elif defined(m68k) || defined(mc68000) || #cpu(m68k) || #machine(m68k)

#define PROC_MC680X0

#elif defined(__mips__) || defined(_mips) || #cpu(mips) || #machine(mips)

#define PROC_MIPS

#elif defined(__powerpc__) || defined(__PPC__) || #cpu(powerpc) || #machine(powerpc)

#define PROC_PPC

#elif defined(__s390__) || #cpu(s390) || #machine(s390)

#define PROC_S390 /* ? */

#elif defined(__sh__) || #cpu(sh) || #machine(sh)

#define PROC_SH /* ? */

#elif defined(__sparc__) || #cpu(sparc) || #cpu(sparc64) || #machine(sparc) || #machine(sparc64)

#define PROC_SPARC

#elif defined(__x86_64__) || #cpu(x86_64)

#define PROC_X86_64

#else

#warning Unknown processor type.  Please define something appropriate.

#endif

#define WIN_DUMB

/*----------------------------------------------------------------------*/

/*      Desired or available feature list                               */

/*----------------------------------------------------------------------*/

#define SYSV_IPC_AVAIL	/* System V Interprocess Communication available */

#define MMAP_AVAIL

#undef _POSIX_SOURCE

#undef _POSIX_C_SOURCE

#undef _XOPEN_SOURCE

#define _POSIX_SOURCE	1

#define _POSIX_C_SOURCE 199309L

#define _XOPEN_SOURCE	500

#define HAVE_STRCASECMP 1

#define HAVE_STRDUP 1

/* Only effective on glibc 2.1 and newer. */

#define _LARGEFILE_SOURCE 1

#define _LARGEFILE64_SOURCE 1

#define _FILE_OFFSET_BITS 64 /* Should be safe, I think... */

#ifndef _REENTRANT

#define _REENTRANT

#endif

/* good for the EGCS C/C++ compiler on Linux(e.g. putenv(), tempnam() proto) */

#define _SVID_SOURCE 1

/*----------------------------------------------------------------------*/

/*      #includes                                                       */

/*----------------------------------------------------------------------*/

#include <sys/types.h>

#include <limits.h>

#include <sys/stat.h>

#include <stddef.h>

#include <stdio.h>

#include <ctype.h>

#include <string.h>

#include <malloc.h>

#include <memory.h>

#include <stdlib.h>

#include <math.h>

#include <errno.h>

#include <float.h>

#include <unistd.h>

/* Check if there are POSIX threads available */

#ifdef _POSIX_THREADS

#define POSIX_THREADS_AVAIL

#endif

/*----------------------------------------------------------------------*/

/*      Missing ANSI-isms                                               */

/*----------------------------------------------------------------------*/

#define noalias	

#ifndef SEEK_SET

#define SEEK_SET	0	/* Set file pointer to offset */

#define SEEK_CUR	1	/* Set file pointer to current plus offset */

#define SEEK_END	2	/* Set file pointer to EOF plus offset */

#endif

#ifndef FILENAME_MAX

#define FILENAME_MAX 1024

#endif

/*----------------------------------------------------------------------*/

/*      Aliased Logicals, Datatypes                                     */

/*----------------------------------------------------------------------*/

/*----------------------------------------------------------------------*/

/*      Misc Macros                                                     */

/*----------------------------------------------------------------------*/

#define PROTO(x) x	/* Prototypes are acceptable */

#define VPROTO(x) x   /* Prototype for variable argument list */

#define DIRDELIMCHR     '/'

#define DIRDELIMSTR     "/"

#define CWDSTR          "."

#define KBYTE           (1024)

#define MBYTE           (1048576)

#include <endian.h>

#if __BYTE_ORDER == __LITTLE_ENDIAN

#define IS_LITTLE_ENDIAN

#else

#define IS_BIG_ENDIAN

#endif

#define TEMPNAM_AVAIL

#define HAVE_MADVISE

/*----------------------------------------------------------------------*/

/*      For importing MS_DOS code                                       */

/*----------------------------------------------------------------------*/

#define near

#define far

#define huge

#define cdecl

#define pascal

#define _pascal

#define _near

#define _far

#define _huge

#define _cdecl

/*----------------------------------------------------------------------*/

/*      Macros for Floating Point                                       */

/*----------------------------------------------------------------------*/

#define EXP2(x) exp((x)*LN2)

#define LOG2(x) (log(x)*(1./LN2))

#define EXP10(x) exp((x)*LN10)

#define LOG10(x) log10(x)

/*----------------------------------------------------------------------*/

/*      Macros Defining Limits                                          */

/*----------------------------------------------------------------------*/

#define MAXALLOC	0x40000000 /* Largest permissible memory request */

#endif