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/* salpanel.h
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* File Name: salpanel.h
*
* Author: Colombe Chappey
*
* Version Creation Date: 1/27/96
*
* $Revision: 6.13 $
*
* File Description:
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* ------- ---------- -----------------------------------------------------
*
*
* ==========================================================================
*/
#ifndef _SALPANEL_
#define _SALPANEL_
#include <salsa.h>
#include <seqport.h>
#include <vibrant.h>
#include <txalign.h>
#include <explore.h>
extern WindoW getwindow_frompanel (PaneL pnl);
extern PaneL GetPanelFromWindow (WindoW w);
extern EditAlignDataPtr GetAlignEditData (WindoW w);
extern EditAlignDataPtr GetAlignDataPanel (PaneL pnl);
/********************************************************
***
*** SetupScrollBar
*** CorrectBarMax_v: nr of sequences NOT shown
*** CorrectBarMax_h: length of alignment NOT shown
*** CorrectBarPage_v: v_Page - 1
*** CorrectBarPage_h: visibleWidth - 1
***
*********************************************************/
extern BaR SeqEdGetSlateScrollBar (PaneL pnl);
extern Int4 SeqEdGetValueScrollBar (PaneL pnl);
extern void SeqEdSetValueScrollBar (PaneL pnl, Int4 value);
extern void SeqEdCorrectBarPage (PaneL pnl, Int4 page1, Int4 page2);
extern void SeqEdCorrectBarValue (PaneL pnl, Int4 value);
extern void SeqEdCorrectBarMax (PaneL pnl, Int4 value);
extern void SeqEdSetCorrectBarMax (PaneL pnl, EditAlignDataPtr adp, float hratio);
extern void VscrlProc (BaR sb, SlatE s, Int4 newval, Int4 oldval);
extern void HscrlProc (BaR sb, SlatE s, Int4 newval, Int4 oldval);
extern Int4 hoffset2voffset (EditAlignDataPtr adp, ValNodePtr anp_list, Int4 line_len, Int4 left, Int4 right, Int4 hoffset);
/************************************************************
*** ResizeAlignDataWindow: Call Back for DocumentWindow
*************************************************************/
extern void do_resize_panel (PaneL pnl, EditAlignDataPtr adp, Int4 width, Int4 height, Boolean rearrange);
extern void do_resize_window (PaneL pnl, EditAlignDataPtr adp, Boolean rearrange);
/*****************************************************************
***
*** Draw Alignment in Panel p
***
******************************************************************/
extern void on_draw (PaneL p);
extern SeqFeatPtr
GetNextFeatureOnSegOrMaster
(BioseqPtr bsp,
SeqFeatPtr sfp,
Uint4 itemID,
Uint4 index,
SeqMgrFeatContextPtr fcontext);
extern void DoFixCDS (SeqFeatPtr sfp, Pointer userdata);
#ifdef WIN_MAC
extern void UpdateSequenceFormActivate (WindoW w);
extern void UpdateSequenceFormActivated (WindoW w);
#define SEQFORM_INIT_ACTIVE "SeqFormInitActive"
#define SEQFORM_OPEN_ITEM "SeqFormOpenItem"
#define SEQFORM_CLOSE_ITEM "SeqFormCloseItem"
#endif
extern ForM
FeaturePropagateForm
(BioseqPtr bsp,
SeqAlignPtr salp,
Uint2 selFeatItemID);
#define ADD_TITLE 1
#define ADD_RRNA 2
#define ADD_CDS 3
#define ADD_IMP 4
#define ADD_GENE 5
#define CHECK_TITLE 6
typedef struct batchapplyfeaturedetails
{
CharPtr defline;
CharPtr geneName;
CharPtr geneDesc;
CharPtr protName;
CharPtr protDesc;
CharPtr rnaName;
CharPtr featcomment;
Int4 featdef_choice;
CharPtr featdef_name;
Int4 reading_frame;
Int4 rnaSubType;
} BatchApplyFeatureDetailsData, PNTR BatchApplyFeatureDetailsPtr;
extern BatchApplyFeatureDetailsPtr
BatchApplyFeatureDetailsFree
(BatchApplyFeatureDetailsPtr bafdp);
extern BatchApplyFeatureDetailsPtr BatchApplyFeatureDetailsNew (void);
typedef int (LIBCALLBACK *CompareFunc) (Nlm_VoidPtr, Nlm_VoidPtr);
extern int LIBCALLBACK CompareImpFeatEnumFieldAssoc (VoidPtr ptr1, VoidPtr ptr2);
extern int LIBCALLBACK CompareFeatureValNodeStrings (VoidPtr ptr1, VoidPtr ptr2);
extern void SortEnumFieldAssocPtrArray (EnumFieldAssocPtr alist, CompareFunc compar);
extern DialoG
BatchApplyFeatureDetailsDialog (GrouP parent, Int4 feattype);
extern void
ApplyFeatureToAlignment
(Uint2 entityID,
SeqAlignPtr salp,
SeqLocPtr slp,
Int4 feattype);
extern SeqAnnotPtr GetSeqAnnotForAlignment (SeqAlignPtr sap);
extern void ConvertPairwiseToMultipleAlignment (SeqAlignPtr sap);
#endif
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