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/

GNU-GPL

INSTALL

Makefile

README

bin/

doc/

doc/GFF2APLOT_MANUAL.ps.gz

examples/

examples/mhcregion/

examples/mhcregion/README

examples/mhcregion/hs-mm.gff

examples/mhcregion/hs-mm.sgp1.gff

examples/mhcregion/hs-mm.sim

examples/mhcregion/hs-mm.sim.gff

examples/mhcregion/hs-mm.tblastx.gff

examples/mhcregion/hs.fa

examples/mhcregion/hs.gff

examples/mhcregion/index.html

examples/mhcregion/kk.sim

examples/mhcregion/mhc2+sgp1.rc

examples/mhcregion/mhc2.rc

examples/mhcregion/mhc2labels.rc

examples/mhcregion/mhc2spc.rc

examples/mhcregion/mm.fa

examples/mhcregion/mm.gff

examples/splice_sites/

examples/splice_sites/GT-AG.rc

examples/splice_sites/GT-AG_sm.rc

examples/splice_sites/KCRB.AG.hs-mm.gff

examples/splice_sites/KCRB.AG.hs.gff

examples/splice_sites/KCRB.AG.mm.gff

examples/splice_sites/KCRB.GT.hs-mm.gff

examples/splice_sites/KCRB.GT.hs.gff

examples/splice_sites/KCRB.GT.mm.gff

examples/splice_sites/KCRB.hs.gb

examples/splice_sites/KCRB.hs.gff

examples/splice_sites/KCRB.hs_utr.gff

examples/splice_sites/KCRB.mm.gb

examples/splice_sites/KCRB.mm.gff

examples/splice_sites/KCRB.mm_utr.gff

examples/splice_sites/README

examples/wublast/

examples/wublast/README

examples/wublast/index.html

examples/wublast/taf6.hs.gene.gb

examples/wublast/taf6.hs.gene.gff

examples/wublast/taf6.mm.gene.gb

examples/wublast/taf6.mm.gene.gff

examples/wublast/taf6.mmhs.genomic.blastn

examples/wublast/taf6.mmhs.genomic.blastn.aplot.gff

examples/wublast/taf6.mmhs.genomic.blastn.full.gff

examples/wublast/taf6.mmhs.genomic.blastn.gff

examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff

examples/wublast/taf6.mmhs.genomic.tblastx.gff

examples/wublast/taf6.tblastx.rc

src/

src/ali2gff/

src/ali2gff/Makefile

src/ali2gff/ali2gff.c

src/ali2gff/ali2gff.h

src/blat2gff.pl

src/gff2aplot.pl

src/parseblast.pl

src/sim2gff.pl

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