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AUTHORS

COPYING

ChangeLog

INSTALL

Makefile

NEWS

bam.c

bam.h

bam_aux.c

bam_color.c

bam_endian.h

bam_import.c

bam_index.c

bam_lpileup.c

bam_maqcns.c

bam_maqcns.h

bam_mate.c

bam_md.c

bam_pileup.c

bam_plcmd.c

bam_rmdup.c

bam_rmdupse.c

bam_sort.c

bam_stat.c

bam_tview.c

bamtk.c

bgzf.c

bgzf.h

bgzip.c

examples/

examples/00README.txt

examples/Makefile

examples/calDepth.c

examples/ex1.fa

examples/ex1.sam.gz

faidx.c

faidx.h

glf.c

glf.h

khash.h

knetfile.c

knetfile.h

kseq.h

ksort.h

kstring.c

kstring.h

misc/

misc/Makefile

misc/blast2sam.pl

misc/bowtie2sam.pl

misc/export2sam.pl

misc/interpolate_sam.pl

misc/maq2sam.c

misc/md5.c

misc/md5.h

misc/md5fa.c

misc/novo2sam.pl

misc/samtools.pl

misc/soap2sam.pl

misc/wgsim.c

misc/wgsim_eval.pl

misc/zoom2sam.pl

razf.c

razf.h

razip.c

sam.c

sam.h

sam_view.c

samtools.1

source.dot

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