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"""
This file builds rpy.
It has been adapted to allow multiple versions of the rpy shared
library to be included in the build. To enable this, set the
environment variable "RHOMES" to a colon-delimited
(semicolon-delimited on MS-Windows) list of R installation directories.
For linux csh derivatives (including tcsh) use something like
setenv RHOMES /usr/local/R-2.1.0/lib/R:/usr/local/R-2.1.1/lib/R
python setup.py bdist
For linux sh derivatives (including bash) use something like:
RHOMES=/usr/local/R-2.1.0/lib/R:/usr/local/R-2.1.1/lib/R
export RHOMES
python setup.py bdist
For windows, edit setup.32 to include the correct paths, then use
something like:
copy setup.Win32 setup.cfg
python setup.py build --compiler=mingw32 bdist_wininst
setup.py will automatically look in C:\Program Files\R to determine
which versions of R are installed, and will build an installer that
can be used for each of these R versions.
See the files INSTALL.UNIX and INSTALL.WINDOWS for more details.
"""
DEBUG=False
import os, os.path, sys, shutil, re
from distutils.core import setup, Extension
from distutils.sysconfig import *
from distutils.errors import *
import rpy_tools
if sys.platform=="win32":
import rpy_wintools
# Get list of R Home directories that we will be processing
try:
if sys.platform=="win32":
RHOMES = os.environ['RHOMES'].split(';')
else:
RHOMES = os.environ['RHOMES'].split(':')
except:
RHOMES = []
print "RHOMES=", RHOMES
print "DEBUG=", DEBUG
if not RHOMES:
if sys.platform=="win32":
RHOMES=rpy_wintools.get_RHOMES()
else:
RHOMES = [rpy_tools.get_R_HOME(force_exec=False)]
print "Setting RHOMES to ", RHOMES
# ensure RHOMES is in ascii, since most command line tools are unhappy with unicode...
RHOMES = map( lambda x: x.encode('ascii'), RHOMES )
# On windows, check for/create the python link library
#if sys.platform=="win32":
# rpy_wintools.CreatePythonWinLib()
# On Mac OS X ("darwin") it is necessary to change the symlink
# /Library/Frameworks/R.framework/Versions/Current
# to point to the current version of R in
# /Library/Frameworks/R.framework/Versions/X.Y
# for that version of R to execute. So, we need to store the original
# symlink here so we can restore it when we are done
if sys.platform=="darwin":
darwin_original_version = os.readlink("/Library/Frameworks/R.framework/Versions/Current")
modules = []
for RHOME in RHOMES:
RHOME = RHOME.strip()
if DEBUG:
# to avoid strict prototypes errors from R includes
get_config_vars()['OPT'] = '-g -Wall'
else:
# to avoid strict prototypes errors from R includes
get_config_vars()['OPT'] = '-DNDEBUG -O3 -Wall'
# get the Python version
if sys.version[:3] >= '2.2':
DEFINE = []
UNDEF = ['PRE_2_2']
else:
DEFINE = [('PRE_2_2', None)]
UNDEF = []
# configure the R paths
#if sys.platform=="darwin":
# version =
# if os.symlink("/Library/Frameworks/R.framework/Versions/Current")
# if RHOME.endswith('/'):
# RHOME = RHOME[:-1]
# print "RHOME=",os.path.join(os.path.dirname(RHOME),
# os.readlink(RHOME) )
# sys.exit()
RVERSION = rpy_tools.get_R_VERSION(RHOME, force_exec=True)
RVER = rpy_tools.get_R_VERSION_CODE(RVERSION)
print "### Using R verion %s installed at %s ###" % (RVERSION, RHOME)
r_libs = [ # Different verisons of R put .so/.dll in different places
os.path.join(RHOME, 'bin'), # R 2.0.0+
os.path.join(RHOME, 'lib'), # Pre 2.0.0
]
print "RHOME=",RHOME
base_source_files = ["src/rpymodule.c", "src/R_eval.c",
"src/io.c"]
exists = os.path.exists
mtime = os.path.getmtime
# Make one copy of the source files for this R version
source_files = []
for f in base_source_files:
# file.c => file2010.c
nfile = f[0:-2] + RVER + '.c'
print "copying %s -> %s" % (f, nfile)
if (not exists(nfile)) or ( mtime(f) > mtime(nfile) ):
shutil.copy(f, nfile)
source_files.append(nfile)
if sys.platform=='win32':
include_dirs = [ os.path.join(RHOME.strip(), 'include'),
'src' ]
libraries= ['R']
library_dirs = r_libs
runtime_libs = []
extra_compile_args= []
source_files = source_files + ["src\\setenv.c"]
elif sys.platform=='darwin':
include_dirs = [ os.path.join(RHOME.strip(), 'include'),
'src' ]
libraries=['R']
library_dirs= r_libs
runtime_libs = r_libs
extra_compile_args=[]
else: # unix-like systems, this is known to work for Linux and Solaris
include_dirs = [ os.path.join(RHOME.strip(), 'include'),
'src', '/usr/share/R/include' ]
library_dirs = r_libs
runtime_libs = r_libs
extra_compile_args=["-shared"]
source_files = source_files + ["src/setenv.c"]
libraries=['R']
# Ask R to tell us how to properly link against lapack
extra_compile_args += [ rpy_tools.get_R_LAPACK_LIB_FLAGS( RHOME ) ]
# Discover which array packages are present
try:
import numpy
DEFINE.append(('WITH_NUMERIC', '3'))
DEFINE.append(('PY_ARRAY_TYPES_PREFIX', 'PyArray_'))
include_dirs.append(numpy.get_include())
except ImportError:
# fall back to Numeric
try:
import Numeric
DEFINE.append(('WITH_NUMERIC', '1'))
except ImportError:
UNDEF.append('WITH_NUMERIC')
# get the RPy version
from rpy_version import rpy_version
LONG_DESC = """RPy provides a robust Python interface to the R
programming language. It can manage all kinds of R objects and can
execute arbitrary R functions. All the errors from the R language are
converted to Python exceptions."""
# use R version specific shared library name
shlib_name = "_rpy%s" % RVER
DEFINE.append( ('RPY_SHNAME', shlib_name))
DEFINE.append( ('INIT_RPY', 'init_rpy%s' % RVER ) )
# add debugging
modules.append( Extension(
shlib_name,
source_files,
include_dirs=include_dirs,
libraries=libraries,
library_dirs=library_dirs,
define_macros=DEFINE,
undef_macros=UNDEF,
extra_compile_args=extra_compile_args,
runtime_library_dirs = runtime_libs,
) )
setup(name="rpy",
version=rpy_version,
description="Python interface to the R language",
maintainer="Gregory R. Warnes",
maintainer_email="warnes@bst.rochester.edu",
url="http://rpy.sourceforge.net",
license="GPL",
long_description=LONG_DESC,
py_modules=['rpy', 'rpy_io', 'rpy_version', 'rpy_tools', 'rpy_options',
'rpy_wintools'],
ext_modules=modules
)
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