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1.1.1
by Aaron M. Ucko
Import upstream version 6.1.20040616 |
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#!/bin/sh
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#
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1.1.8
by Aaron M. Ucko
Import upstream version 6.1.20080302 |
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# $Id: build.me64,v 6.3 2008/01/25 19:59:38 ucko Exp $
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1.1.1
by Aaron M. Ucko
Import upstream version 6.1.20040616 |
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#
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# W A R N I N G ! ! !
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# That script is intended for internal use in NCBI only
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#
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#
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NCBI=/netopt/ncbi_tools/ncbi64 |
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PATH=/usr/bin:/bin:/sbin:/usr/sbin:/usr/ccs/bin:$NCBI/bin:$PATH |
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export PATH NCBI
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1.1.8
by Aaron M. Ucko
Import upstream version 6.1.20080302 |
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#check that we're running within NCBI
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1.1.1
by Aaron M. Ucko
Import upstream version 6.1.20040616 |
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MYDOMAIN=`grep '^domain' /etc/resolv.conf |awk '{print $2}'` |
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1.1.8
by Aaron M. Ucko
Import upstream version 6.1.20080302 |
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test -z "$MYDOMAIN" && MYDOMAIN="`hostname --fqdn 2>/dev/null`" |
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test -z "$MYDOMAIN" && MYDOMAIN="`domainname`" |
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if [ `echo "$MYDOMAIN" | grep -c 'nlm[.]nih[.]gov$'` != 1 ] ; then |
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echo That script is intended for internal use in NCBI only |
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exit 1 |
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1.1.1
by Aaron M. Ucko
Import upstream version 6.1.20040616 |
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fi
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1.1.8
by Aaron M. Ucko
Import upstream version 6.1.20080302 |
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SCRIPTDIR=/am/ncbiapdata/scripts/build |
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1.1.1
by Aaron M. Ucko
Import upstream version 6.1.20040616 |
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echo "Building ASNs" |
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( cd asn; rm -f asn.all asnpub.all ; chmod +x *.unx; sh all.unx; sh allpub.unx) |
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if [ ! -d "asnstat" ] ; then |
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mkdir asnstat; ( cd asnstat; sh ../asn/makestat.unx ) |
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1.1.8
by Aaron M. Ucko
Import upstream version 6.1.20080302 |
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test -f $SCRIPTDIR/rebuild_asn && $SCRIPTDIR/rebuild_asn . |
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1.1.1
by Aaron M. Ucko
Import upstream version 6.1.20040616 |
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fi
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rm -f data/*.val |
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asntool -m asn/asn.all -v data/seqcode.prt -e data/seqcode.val || exit 1 |
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asntool -m asn/asn.all -v data/featdef.prt -e data/featdef.val |
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asntool -m asn/asn.all -v data/gc.prt -e data/gc.val |
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cat biostruc/*.asn asn/asn.all >/tmp/big$$.asn
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asntool -m /tmp/big$$.asn -v data/bstdt.prt -e data/bstdt.val
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rm -f /tmp/big$$.asn
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#now make needed directories if they're absent
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mkdir -p include bin lib build altlib shlib >/dev/null 2>&1 |
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if [ ! -d "network/socks/socks.cstc.4.2" ]; then |
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cd network/socks; zcat socks.cstc.4.2.pre1.tar.Z | tar xf -; |
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rm -rf socks.cstc.4.2; mv socks.cstc.4.2.pre1 socks.cstc.4.2; |
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rm -rf socks.cstc.4.2/rtelnet; rm -rf socks.cstc.4.2/rftp; |
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cd ../..
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fi
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if [ ! -d "ncbi/network/encrypt/ripem" ]; then |
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cd network/encrypt; tar xf ripem.tar ripem/rsaref/source; |
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cd ../..
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fi
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echo "building the NCBI C toolkit on Solaris/Sparc in 64-bit mode" |
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cd build
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1.1.8
by Aaron M. Ucko
Import upstream version 6.1.20080302 |
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dmake -j 3 -f $SCRIPTDIR/make.master LCL_TARGET=sol TARGET_INCLUDE=include \ |
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1.1.1
by Aaron M. Ucko
Import upstream version 6.1.20040616 |
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DBUGEXTRA=-KPIC DBUGEXTRA2=-g COPYBIN=bin CLLIB=cllib all |
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exit 0 |