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~ubuntu-branches/ubuntu/raring/t-coffee/raring

Viewing all changes in revision 11.

Committer: Package Import Robot
Author(s): Charles Plessy
Date: 2012-03-02 14:04:20 UTC
mfrom: (1.1.9) (2.1.8 sid)
Revision ID: package-import@ubuntu.com-20120302140420-y5hss3x20012bmqd

Tags: 9.02.r1228-2

http://bugs.debian.org/661516

Recommend tm-align instead of distributing local copy
(debian/control, debian/t-coffee.install, Closes: #661516).

files added:
debian/upstream

example/sample1.score_ascii

example/sample_seq1.score_ascii

example/sample_seq1.tc_lib

files removed:
README

bin/test.pl

debian/t-coffee-doc.doc-base.technical

debian/t-coffee-doc.doc-base.tutorial

debian/upstream-metadata.yaml

doc/README

doc/aln_compare.doc.txt

doc/seq_reformat.doc.txt

doc/t_coffee.pdf

doc/t_coffee_technical.doc

doc/t_coffee_technical.htm

doc/t_coffee_technical.txt

doc/t_coffee_tutorial.doc

doc/t_coffee_tutorial.htm

doc/t_coffee_tutorial.txt

test

test/test.pep

files modified:
.pc/probconsrna.patch/t_coffee_source/define_header.h

debian/changelog

debian/control

debian/copyright

debian/rules

example/clustalw_method.tc_method *

example/sample_aln1.aln

example/sample_seq1.aln

install

license.txt

t_coffee_source/CUSTOM_evaluate_for_struc.c

t_coffee_source/aln_compare.c

t_coffee_source/aln_convertion_util.c

t_coffee_source/define_header.h

t_coffee_source/dev1.c

t_coffee_source/dev1_lib_header.h

t_coffee_source/dev2.c

t_coffee_source/dev2_lib_header.h

t_coffee_source/dev3.c

t_coffee_source/dev3_lib_header.h

t_coffee_source/dev4.c

t_coffee_source/dev4_lib_header.h

t_coffee_source/diagonal.c

t_coffee_source/dp_lib_header.h

t_coffee_source/evaluate.c

t_coffee_source/evaluate_dirichlet.c

t_coffee_source/evaluate_for_domain.c

t_coffee_source/evaluate_for_struc.c

t_coffee_source/fast_tree_header.h

t_coffee_source/fastal.c

t_coffee_source/fastal_lib_header.h

t_coffee_source/fastal_opt_parsing.c

t_coffee_source/fsa_dp.c

t_coffee_source/header_list

t_coffee_source/hsearch.c

t_coffee_source/io_func.c

t_coffee_source/io_lib_header.h

t_coffee_source/iteration.c

t_coffee_source/matrices.h

t_coffee_source/parttree.c

t_coffee_source/pavie_dp.c

t_coffee_source/pb_util_read_seq_util.c

t_coffee_source/pb_util_read_sequence.c

t_coffee_source/perl_header_lib.h

t_coffee_source/random.c

t_coffee_source/reformat.c

t_coffee_source/reformat_struc.c

t_coffee_source/scoring.c

t_coffee_source/showpair.c

t_coffee_source/source_list

t_coffee_source/t_coffee.c

t_coffee_source/t_coffee.h

t_coffee_source/tree.c

t_coffee_source/tree_util.c

t_coffee_source/util.c

t_coffee_source/util_aln_analyze.c

t_coffee_source/util_analyse_constraints_list.c

t_coffee_source/util_constraints_list.c

t_coffee_source/util_declare.c

t_coffee_source/util_domain_constraints_list.c

t_coffee_source/util_domain_dp.c

t_coffee_source/util_domain_dp_drivers.c

t_coffee_source/util_dp_cdna_fasta_nw.c

t_coffee_source/util_dp_clean_maln.c

t_coffee_source/util_dp_drivers.c

t_coffee_source/util_dp_est.c

t_coffee_source/util_dp_fasta_nw.c

t_coffee_source/util_dp_fasta_sw.c

t_coffee_source/util_dp_generic_fasta_nw.c

t_coffee_source/util_dp_gotoh_nw.c

t_coffee_source/util_dp_gotoh_sw.c

t_coffee_source/util_dp_mm_nw.c

t_coffee_source/util_dp_sim.c

t_coffee_source/util_dp_ssec_pwaln.c

t_coffee_source/util_dp_suboptimal_nw.c

t_coffee_source/util_dps.c

t_coffee_source/util_graph_maln.c

t_coffee_source/util_job_handling.c

t_coffee_source/util_lib_header.h

t_coffee_source/util_make_tree.c

tclinkdb.txt

Show diffs side-by-side

added added

removed removed

.pc/probconsrna.patch/t_coffee_source/define_header.h

debian/changelog

debian/copyright

debian/t-coffee-doc.doc-base.technical

debian/t-coffee-doc.doc-base.tutorial

debian/upstream

debian/upstream-metadata.yaml

doc/aln_compare.doc.txt

doc/seq_reformat.doc.txt

doc/t_coffee.pdf

doc/t_coffee_technical.doc

doc/t_coffee_technical.htm

doc/t_coffee_technical.txt

doc/t_coffee_tutorial.doc

doc/t_coffee_tutorial.htm

doc/t_coffee_tutorial.txt

example/sample1.score_ascii

example/sample_aln1.aln

example/sample_seq1.aln

example/sample_seq1.score_ascii

example/sample_seq1.tc_lib

t_coffee_source/CUSTOM_evaluate_for_struc.c

t_coffee_source/aln_compare.c

t_coffee_source/aln_convertion_util.c

t_coffee_source/define_header.h

t_coffee_source/dev1.c

t_coffee_source/dev1_lib_header.h

t_coffee_source/dev2.c

t_coffee_source/dev2_lib_header.h

t_coffee_source/dev3.c

t_coffee_source/dev3_lib_header.h

t_coffee_source/dev4.c

t_coffee_source/dev4_lib_header.h

t_coffee_source/diagonal.c

t_coffee_source/dp_lib_header.h

t_coffee_source/evaluate.c

t_coffee_source/evaluate_dirichlet.c

t_coffee_source/evaluate_for_domain.c

t_coffee_source/evaluate_for_struc.c

t_coffee_source/fast_tree_header.h

t_coffee_source/fastal.c

t_coffee_source/fastal_lib_header.h

t_coffee_source/fastal_opt_parsing.c

t_coffee_source/fsa_dp.c

t_coffee_source/header_list

t_coffee_source/hsearch.c

t_coffee_source/io_func.c

t_coffee_source/io_lib_header.h

t_coffee_source/iteration.c

t_coffee_source/matrices.h

t_coffee_source/parttree.c

t_coffee_source/pavie_dp.c

t_coffee_source/pb_util_read_seq_util.c

t_coffee_source/pb_util_read_sequence.c

t_coffee_source/perl_header_lib.h

t_coffee_source/random.c

t_coffee_source/reformat.c

t_coffee_source/reformat_struc.c

t_coffee_source/scoring.c

t_coffee_source/showpair.c

t_coffee_source/source_list

t_coffee_source/t_coffee.c

t_coffee_source/t_coffee.h

t_coffee_source/tree.c

t_coffee_source/tree_util.c

t_coffee_source/util.c

t_coffee_source/util_aln_analyze.c

t_coffee_source/util_analyse_constraints_list.c

t_coffee_source/util_constraints_list.c

t_coffee_source/util_declare.c

t_coffee_source/util_domain_constraints_list.c

t_coffee_source/util_domain_dp.c

t_coffee_source/util_domain_dp_drivers.c

t_coffee_source/util_dp_cdna_fasta_nw.c

t_coffee_source/util_dp_clean_maln.c

t_coffee_source/util_dp_drivers.c

t_coffee_source/util_dp_est.c

t_coffee_source/util_dp_fasta_nw.c

t_coffee_source/util_dp_fasta_sw.c

t_coffee_source/util_dp_generic_fasta_nw.c

t_coffee_source/util_dp_gotoh_nw.c

t_coffee_source/util_dp_gotoh_sw.c

t_coffee_source/util_dp_mm_nw.c

t_coffee_source/util_dp_sim.c

t_coffee_source/util_dp_ssec_pwaln.c

t_coffee_source/util_dp_suboptimal_nw.c

t_coffee_source/util_dps.c

t_coffee_source/util_graph_maln.c

t_coffee_source/util_job_handling.c

t_coffee_source/util_lib_header.h

t_coffee_source/util_make_tree.c

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