← Back to branch summary

~ubuntu-branches/ubuntu/trusty/gmap/trusty-proposed

~ubuntu-branches/ubuntu/trusty/gmap/trusty-proposed

Viewing all changes in revision 14.

Committer: Package Import Robot
Author(s): Andreas Tille
Date: 2013-08-02 15:09:36 UTC
mfrom: (1.1.12)
Revision ID: package-import@ubuntu.com-20130802150936-wcnc82q6ak39q49z

Tags: 2013-07-20-1

* New upstream version
* debian/control:
- cme fix dpkg-control
- debhelper 9

files added:
.pc/.quilt_patches

.pc/.quilt_series

config/ax_check_compile_flag.m4

config/ax_ext.m4

config/ax_gcc_x86_cpuid.m4

config/libtool.m4

config/ltoptions.m4

config/ltsugar.m4

config/ltversion.m4

config/lt~obsolete.m4

src/bzip2.c

src/bzip2.h

src/iit-read-univ.c

src/iit-read-univ.h

src/iit-write-univ.c

src/iit-write-univ.h

src/indexdb-write.c

src/indexdb-write.h

src/tableuint.c

src/tableuint.h

src/tableuint8.c

src/tableuint8.h

src/uint8list.c

src/uint8list.h

src/univinterval.c

src/univinterval.h

util/vcf_iit.pl.in

files removed:
src/compile

files modified:
.pc/install-data-local/Makefile.in

ChangeLog

Makefile.am

Makefile.in

README

VERSION

acinclude.m4

aclocal.m4

config.site

configure

configure.ac

debian/changelog

debian/compat

debian/control

debian/gmap.1

debian/gsnap.1

debian/patches/install-data-local

src/Makefile.am

src/Makefile.in

src/access.c

src/access.h

src/atoi.c

src/atoiindex.c

src/bigendian.c

src/bigendian.h

src/block.c

src/block.h

src/boyer-moore.c

src/boyer-moore.h

src/chimera.c

src/chimera.h

src/chrnum.c

src/chrnum.h

src/chrom.c

src/chrom.h

src/chrsubset.c

src/chrsubset.h

src/cmet.c

src/cmetindex.c

src/compress.c

src/compress.h

src/config.h.in

src/datadir.c

src/diag.c

src/diag.h

src/diagdef.h

src/dynprog.c

src/dynprog.h

src/genome-write.c

src/genome-write.h

src/genome.c

src/genome.h

src/genome_hr.c

src/genome_hr.h

src/genomicpos.c

src/genomicpos.h

src/get-genome.c

src/gmap.c

src/gmapindex.c

src/goby.c

src/goby.h

src/gregion.c

src/gregion.h

src/gsnap.c

src/iit-read.c

src/iit-read.h

src/iit-write.c

src/iit_dump.c

src/iit_get.c

src/iit_store.c

src/iitdef.h

src/inbuffer.c

src/inbuffer.h

src/indexdb.c

src/indexdb.h

src/indexdb_hr.c

src/indexdb_hr.h

src/indexdbdef.h

src/interval.c

src/interval.h

src/intron.c

src/intron.h

src/littleendian.c

src/littleendian.h

src/mapq.c

src/mapq.h

src/match.c

src/match.h

src/matchdef.h

src/matchpool.c

src/matchpool.h

src/maxent_hr.c

src/maxent_hr.h

src/mem.c

src/mem.h

src/oligo.c

src/oligo.h

src/oligoindex.c

src/oligoindex.h

src/oligoindex_hr.c

src/oligoindex_hr.h

src/outbuffer.c

src/outbuffer.h

src/pair.c

src/pair.h

src/pairdef.h

src/pairpool.c

src/pairpool.h

src/parserange.c

src/parserange.h

src/result.c

src/resulthr.c

src/resulthr.h

src/samprint.c

src/samprint.h

src/segmentpos.c

src/segmentpos.h

src/sequence.c

src/sequence.h

src/shortread.c

src/shortread.h

src/smooth.c

src/smooth.h

src/snpindex.c

src/spanningelt.c

src/spanningelt.h

src/splicetrie.c

src/splicetrie.h

src/splicetrie_build.c

src/splicetrie_build.h

src/stage1.c

src/stage1.h

src/stage1hr.c

src/stage1hr.h

src/stage2.c

src/stage2.h

src/stage3.c

src/stage3.h

src/stage3hr.c

src/stage3hr.h

src/substring.c

src/substring.h

src/table.c

src/tableint.c

src/types.h

src/uintlist.c

src/uintlist.h

src/uinttable.c

src/uniqscan.c

tests/Makefile.am

tests/Makefile.in

tests/coords1.test.ok

tests/iittest.iit.ok

tests/setup1.test.in

util/Makefile.am

util/Makefile.in

util/dbsnp_iit.pl.in

util/fa_coords.pl.in

util/gff3_genes.pl.in

util/gff3_introns.pl.in

util/gff3_splicesites.pl.in

util/gmap_build.pl.in

util/gmap_process.pl.in

Show diffs side-by-side

added added

removed removed

.pc/.quilt_patches

.pc/.quilt_series

.pc/install-data-local/Makefile.in

config/ax_check_compile_flag.m4

config/ax_ext.m4

config/ax_gcc_x86_cpuid.m4

config/libtool.m4

config/ltoptions.m4

config/ltsugar.m4

config/ltversion.m4

config/lt~obsolete.m4

debian/changelog

debian/patches/install-data-local

src/Makefile.am

src/Makefile.in

src/atoiindex.c

src/bigendian.c

src/bigendian.h

src/boyer-moore.c

src/boyer-moore.h

src/chrsubset.c

src/chrsubset.h

src/cmetindex.c

src/config.h.in

src/genome-write.c

src/genome-write.h

src/genome_hr.c

src/genome_hr.h

src/genomicpos.c

src/genomicpos.h

src/get-genome.c

src/gmapindex.c

src/iit-read-univ.c

src/iit-read-univ.h

src/iit-write-univ.c

src/iit-write-univ.h

src/iit-write.c

src/iit_store.c

src/indexdb-write.c

src/indexdb-write.h

src/indexdb_hr.c

src/indexdb_hr.h

src/indexdbdef.h

src/littleendian.c

src/littleendian.h

src/matchpool.c

src/matchpool.h

src/maxent_hr.c

src/maxent_hr.h

src/oligoindex.c

src/oligoindex.h

src/oligoindex_hr.c

src/oligoindex_hr.h

src/outbuffer.c

src/outbuffer.h

src/parserange.c

src/parserange.h

src/segmentpos.c

src/segmentpos.h

src/shortread.c

src/shortread.h

src/spanningelt.c

src/spanningelt.h

src/splicetrie.c

src/splicetrie.h

src/splicetrie_build.c

src/splicetrie_build.h

src/substring.c

src/substring.h

src/tableuint.c

src/tableuint.h

src/tableuint8.c

src/tableuint8.h

src/uint8list.c

src/uint8list.h

src/uinttable.c

src/univinterval.c

src/univinterval.h

tests/Makefile.am

tests/Makefile.in

tests/coords1.test.ok

tests/iittest.iit.ok

tests/setup1.test.in

util/Makefile.am

util/Makefile.in

util/dbsnp_iit.pl.in

util/fa_coords.pl.in

util/gff3_genes.pl.in

util/gff3_introns.pl.in

util/gff3_splicesites.pl.in

util/gmap_build.pl.in

util/gmap_process.pl.in

util/vcf_iit.pl.in

Older »