Viewing all changes in revision 1.
- Committer: Bazaar Package Importer
- Date: 2011-06-08 00:15:15 UTC
- Revision ID: james.westby@ubuntu.com-20110608001515-4y922zicevhdxnnm
Import upstream version 2.2.25
- files added:
- c++
- c++/compilers
- c++/compilers/cygwin
- c++/compilers/msvc1000_prj
- c++/compilers/msvc1000_prj/dll
- c++/compilers/msvc1000_prj/dll/build
- c++/compilers/msvc1000_prj/dll/build/UtilityProjects
- c++/compilers/msvc1000_prj/dll/build/gbench
- c++/compilers/msvc1000_prj/dll/build/gbench/UtilityProjects
- c++/compilers/msvc1000_prj/dll/build/gbench/gbench_install
- c++/compilers/msvc1000_prj/dll/build/gui
- c++/compilers/msvc1000_prj/dll/build/gui/UtilityProjects
- c++/compilers/msvc1000_prj/dll/build/internal
- c++/compilers/msvc1000_prj/dll/build/internal/gbench
- c++/compilers/msvc1000_prj/dll/build/internal/gbench/gbench_install_internal
- c++/compilers/msvc1000_prj/static
- c++/compilers/msvc1000_prj/static/build
- c++/compilers/msvc1000_prj/static/build/UtilityProjects
- c++/compilers/msvc1000_prj/static/build/build-system
- c++/compilers/msvc1000_prj/static/build/build-system/project_tree_builder
- c++/compilers/msvc1000_prj/static/build/build-system/project_tree_builder/msbuild
- c++/compilers/msvc1000_prj/static/build/corelib
- c++/compilers/msvc1000_prj/static/build/gui
- c++/compilers/msvc1000_prj/static/build/gui/UtilityProjects
- c++/compilers/msvc1000_prj/static/build/serial
- c++/compilers/msvc1000_prj/static/build/serial/datatool
- c++/compilers/msvc1000_prj/static/build/util
- c++/compilers/msvc1000_prj/static/build/util/regexp
- c++/compilers/msvc1000_prj/static/build/util/xregexp
- c++/compilers/msvc1000_prj/user
- c++/compilers/msvc1000_prj/user/build
- c++/compilers/msvc1000_prj/user/build/UtilityProjects
- c++/compilers/msvc900_prj
- c++/compilers/msvc900_prj/dll
- c++/compilers/msvc900_prj/dll/build
- c++/compilers/msvc900_prj/dll/build/UtilityProjects
- c++/compilers/msvc900_prj/dll/build/gbench
- c++/compilers/msvc900_prj/dll/build/gbench/UtilityProjects
- c++/compilers/msvc900_prj/dll/build/gbench/gbench_install
- c++/compilers/msvc900_prj/dll/build/gui
- c++/compilers/msvc900_prj/dll/build/gui/UtilityProjects
- c++/compilers/msvc900_prj/dll/build/internal
- c++/compilers/msvc900_prj/dll/build/internal/gbench
- c++/compilers/msvc900_prj/dll/build/internal/gbench/gbench_install_internal
- c++/compilers/msvc900_prj/dll/build/wrappers
- c++/compilers/msvc900_prj/dll/build/wrappers/UtilityProjects
- c++/compilers/msvc900_prj/static
- c++/compilers/msvc900_prj/static/build
- c++/compilers/msvc900_prj/static/build/UtilityProjects
- c++/compilers/msvc900_prj/static/build/build-system
- c++/compilers/msvc900_prj/static/build/build-system/project_tree_builder
- c++/compilers/msvc900_prj/static/build/build-system/project_tree_builder/msbuild
- c++/compilers/msvc900_prj/static/build/corelib
- c++/compilers/msvc900_prj/static/build/gui
- c++/compilers/msvc900_prj/static/build/gui/UtilityProjects
- c++/compilers/msvc900_prj/static/build/serial
- c++/compilers/msvc900_prj/static/build/serial/datatool
- c++/compilers/msvc900_prj/static/build/util
- c++/compilers/msvc900_prj/static/build/util/regexp
- c++/compilers/msvc900_prj/static/build/util/xregexp
- c++/compilers/msvc900_prj/user
- c++/compilers/msvc900_prj/user/build
- c++/compilers/msvc900_prj/user/build/UtilityProjects
- c++/compilers/unix
- c++/compilers/xCode
- c++/compilers/xCode/English.lproj
- c++/compilers/xCode/English.lproj/InstallLibsPanel.nib
- c++/compilers/xCode/English.lproj/MainMenu.nib
- c++/compilers/xCode/xCode.xcodeproj
- c++/compilers/xcode30_prj
- c++/compilers/xcode30_prj/dll
- c++/compilers/xcode30_prj/dll/UtilityProjects
- c++/compilers/xcode30_prj/dll/ncbi_cpp_dll.xcodeproj
- c++/compilers/xcode30_prj/dll/ncbi_gbench.xcodeproj
- c++/compilers/xcode30_prj/dll/ncbi_gui_dll.xcodeproj
- c++/compilers/xcode30_prj/static
- c++/compilers/xcode30_prj/static/UtilityProjects
- c++/compilers/xcode30_prj/static/UtilityProjects/PTB.xcodeproj
- c++/compilers/xcode30_prj/static/ncbi_cpp.xcodeproj
- c++/compilers/xcode30_prj/static/ncbi_gui.xcodeproj
- c++/include
- c++/include/algo
- c++/include/algo/blast
- c++/include/algo/blast/api
- c++/include/algo/blast/bl2api
- c++/include/algo/blast/blastinput
- c++/include/algo/blast/composition_adjustment
- c++/include/algo/blast/core
- c++/include/algo/blast/dbindex
- c++/include/algo/blast/dbindex_search
- c++/include/algo/blast/format
- c++/include/algo/blast/gumbel_params
- c++/include/algo/dustmask
- c++/include/algo/segmask
- c++/include/algo/winmask
- c++/include/cgi
- c++/include/cgi/impl
- c++/include/common
- c++/include/common/config
- c++/include/connect
- c++/include/connect/ext
- c++/include/connect/impl
- c++/include/corelib
- c++/include/corelib/hash_impl
- c++/include/corelib/impl
- c++/include/dbapi
- c++/include/dbapi/cache
- c++/include/dbapi/driver
- c++/include/dbapi/driver/impl
- c++/include/dbapi/driver/odbc
- c++/include/dbapi/driver/odbc/unix_odbc
- c++/include/dbapi/driver/util
- c++/include/html
- c++/include/objects
- c++/include/objects/biblio
- c++/include/objects/biotree
- c++/include/objects/blast
- c++/include/objects/blastdb
- c++/include/objects/cdd
- c++/include/objects/entrez2
- c++/include/objects/entrezgene
- c++/include/objects/general
- c++/include/objects/genomecoll
- c++/include/objects/homologene
- c++/include/objects/id1
- c++/include/objects/medline
- c++/include/objects/misc
- c++/include/objects/mla
- c++/include/objects/mmdb1
- c++/include/objects/ncbimime
- c++/include/objects/omssa
- c++/include/objects/pub
- c++/include/objects/remap
- c++/include/objects/scoremat
- c++/include/objects/seq
- c++/include/objects/seqalign
- c++/include/objects/seqblock
- c++/include/objects/seqedit
- c++/include/objects/seqfeat
- c++/include/objects/seqloc
- c++/include/objects/seqset
- c++/include/objects/seqtable
- c++/include/objects/submit
- c++/include/objects/taxon1
- c++/include/objects/taxon3
- c++/include/objects/valerr
- c++/include/objects/valid
- c++/include/objmgr
- c++/include/objmgr/impl
- c++/include/objmgr/split
- c++/include/objmgr/util
- c++/include/objtools
- c++/include/objtools/align_format
- c++/include/objtools/alnmgr
- c++/include/objtools/blast
- c++/include/objtools/blast/blastdb_format
- c++/include/objtools/blast/gene_info_reader
- c++/include/objtools/blast/seqdb_reader
- c++/include/objtools/blast/seqdb_writer
- c++/include/objtools/blast/services
- c++/include/objtools/cleanup
- c++/include/objtools/data_loaders
- c++/include/objtools/data_loaders/blastdb
- c++/include/objtools/data_loaders/genbank
- c++/include/objtools/data_loaders/genbank/cache
- c++/include/objtools/data_loaders/genbank/gicache
- c++/include/objtools/data_loaders/genbank/id1
- c++/include/objtools/data_loaders/genbank/id2
- c++/include/objtools/data_loaders/genbank/pubseq
- c++/include/objtools/data_loaders/genbank/pubseq2
- c++/include/objtools/data_loaders/genbank/readers
- c++/include/objtools/data_loaders/genbank/readers/cache
- c++/include/objtools/data_loaders/genbank/readers/id1
- c++/include/objtools/data_loaders/genbank/readers/id2
- c++/include/objtools/data_loaders/genbank/readers/pubseqos
- c++/include/objtools/data_loaders/genbank/readers/pubseqos2
- c++/include/objtools/format
- c++/include/objtools/format/items
- c++/include/objtools/readers
- c++/include/objtools/seqmasks_io
- c++/include/objtools/simple
- c++/include/serial
- c++/include/serial/impl
- c++/include/util
- c++/include/util/bitset
- c++/include/util/cache
- c++/include/util/compress
- c++/include/util/compress/bzip2
- c++/include/util/compress/zlib
- c++/include/util/creaders
- c++/include/util/impl
- c++/include/util/math
- c++/include/util/regexp
- c++/include/util/sequtil
- c++/include/util/tables
- c++/include/util/xregexp
- c++/scripts
- c++/scripts/common
- c++/scripts/common/check
- c++/scripts/common/impl
- c++/scripts/internal
- c++/scripts/internal/projects
- c++/scripts/internal/projects/ToolkitWrappers
- c++/scripts/internal/projects/ToolkitWrappers/post_build
- c++/scripts/internal/projects/ToolkitWrappers/post_build/unix
- c++/scripts/internal/projects/ToolkitWrappers/post_build/win
- c++/scripts/internal/projects/cppcore
- c++/scripts/internal/projects/data-resources
- c++/scripts/internal/projects/debug
- c++/scripts/internal/projects/microbial_genomes
- c++/scripts/internal/projects/os_gateway
- c++/scripts/internal/projects/sra-sdk-for-release
- c++/scripts/internal/projects/test_ncbi_conn
- c++/scripts/projects
- c++/scripts/projects/blast
- c++/scripts/projects/blast/post_build
- c++/scripts/projects/blast/post_build/macosx
- c++/scripts/projects/blast/post_build/macosx/ncbi-blast.pmdoc
- c++/scripts/projects/blast/post_build/rpm
- c++/scripts/projects/blast/post_build/win
- c++/scripts/projects/cobalt
- c++/scripts/projects/corelib
- c++/scripts/projects/datatool
- c++/scripts/projects/dbtest
- c++/scripts/projects/dbtest/install
- c++/scripts/projects/dbtest/post_build
- c++/scripts/projects/dispatcher
- c++/scripts/projects/grid
- c++/scripts/projects/gumbel_params
- c++/scripts/projects/netcache
- c++/scripts/projects/netschedule
- c++/scripts/projects/project_tree_builder
- c++/scripts/projects/public
- c++/scripts/projects/python_ncbi_dbapi
- c++/scripts/projects/python_ncbi_dbapi/post_build
- c++/scripts/projects/seqfetch
- c++/scripts/projects/xmlwrapp
- c++/src
- c++/src/algo
- c++/src/algo/blast
- c++/src/algo/blast/api
- c++/src/algo/blast/bl2api
- c++/src/algo/blast/blastinput
- c++/src/algo/blast/blastinput/unit_test
- c++/src/algo/blast/blastinput/unit_test/data
- c++/src/algo/blast/composition_adjustment
- c++/src/algo/blast/core
- c++/src/algo/blast/dbindex
- c++/src/algo/blast/dbindex/makeindex
- c++/src/algo/blast/dbindex_search
- c++/src/algo/blast/dbindex_search/srsearch
- c++/src/algo/blast/format
- c++/src/algo/blast/gumbel_params
- c++/src/algo/blast/gumbel_params/demo
- c++/src/algo/blast/gumbel_params/unit_test
- c++/src/algo/blast/gumbel_params/unit_test/data
- c++/src/algo/blast/unit_tests
- c++/src/algo/blast/unit_tests/api
- c++/src/algo/blast/unit_tests/api/data
- c++/src/algo/blast/unit_tests/blast_format
- c++/src/algo/blast/unit_tests/blast_format/data
- c++/src/algo/blast/unit_tests/blastdb
- c++/src/algo/blast/unit_tests/blastdb/data
- c++/src/algo/blast/unit_tests/seqdb_reader
- c++/src/algo/blast/unit_tests/seqdb_reader/data
- c++/src/algo/blast/unit_tests/seqdb_reader/data/ranges
- c++/src/algo/dustmask
- c++/src/algo/segmask
- c++/src/algo/winmask
- c++/src/app
- c++/src/app/blast
- c++/src/app/blastdb
- c++/src/app/dustmasker
- c++/src/app/segmasker
- c++/src/app/winmasker
- c++/src/build-system
- c++/src/build-system/project_tree_builder
- c++/src/build-system/project_tree_builder/msbuild
- c++/src/build-system/project_tree_builder_gui
- c++/src/build-system/project_tree_builder_gui/bin
- c++/src/build-system/project_tree_builder_gui/bin/lib
- c++/src/build-system/project_tree_builder_gui/nbproject
- c++/src/build-system/project_tree_builder_gui/nbproject/private
- c++/src/build-system/project_tree_builder_gui/src
- c++/src/build-system/project_tree_builder_gui/src/ptbgui
- c++/src/cgi
- c++/src/connect
- c++/src/connect/ext
- c++/src/corelib
- c++/src/dbapi
- c++/src/dbapi/cache
- c++/src/dbapi/driver
- c++/src/dbapi/driver/odbc
- c++/src/html
- c++/src/objects
- c++/src/objects/access
- c++/src/objects/biblio
- c++/src/objects/biotree
- c++/src/objects/blast
- c++/src/objects/blast/doc
- c++/src/objects/blastdb
- c++/src/objects/blastxml
- c++/src/objects/cdd
- c++/src/objects/cn3d
- c++/src/objects/docsum
- c++/src/objects/entrez2
- c++/src/objects/entrezgene
- c++/src/objects/featdef
- c++/src/objects/gbseq
- c++/src/objects/general
- c++/src/objects/genomecoll
- c++/src/objects/homologene
- c++/src/objects/id1
- c++/src/objects/id2
- c++/src/objects/insdseq
- c++/src/objects/medlars
- c++/src/objects/medline
- c++/src/objects/mim
- c++/src/objects/mla
- c++/src/objects/mmdb
- c++/src/objects/mmdb1
- c++/src/objects/mmdb2
- c++/src/objects/mmdb3
- c++/src/objects/ncbimime
- c++/src/objects/objprt
- c++/src/objects/omssa
- c++/src/objects/pcassay
- c++/src/objects/pcsubstance
- c++/src/objects/proj
- c++/src/objects/pub
- c++/src/objects/pubmed
- c++/src/objects/remap
- c++/src/objects/scoremat
- c++/src/objects/seq
- c++/src/objects/seqalign
- c++/src/objects/seqblock
- c++/src/objects/seqcode
- c++/src/objects/seqedit
- c++/src/objects/seqfeat
- c++/src/objects/seqloc
- c++/src/objects/seqres
- c++/src/objects/seqset
- c++/src/objects/seqsplit
- c++/src/objects/seqtable
- c++/src/objects/seqtable/samples
- c++/src/objects/seqtest
- c++/src/objects/submit
- c++/src/objects/taxon1
- c++/src/objects/taxon3
- c++/src/objects/tinyseq
- c++/src/objects/valerr
- c++/src/objects/valid
- c++/src/objmgr
- c++/src/objmgr/split
- c++/src/objmgr/util
- c++/src/objmgr/util/unit_test
- c++/src/objtools
- c++/src/objtools/align_format
- c++/src/objtools/align_format/unit_test
- c++/src/objtools/align_format/unit_test/data
- c++/src/objtools/alnmgr
- c++/src/objtools/blast
- c++/src/objtools/blast/blastdb_format
- c++/src/objtools/blast/blastdb_format/unit_test
- c++/src/objtools/blast/blastdb_format/unit_test/data
- c++/src/objtools/blast/gene_info_reader
- c++/src/objtools/blast/gene_info_reader/demo
- c++/src/objtools/blast/gene_info_reader/unit_test
- c++/src/objtools/blast/gene_info_reader/unit_test/data
- c++/src/objtools/blast/seqdb_reader
- c++/src/objtools/blast/seqdb_reader/demo
- c++/src/objtools/blast/seqdb_writer
- c++/src/objtools/blast/seqdb_writer/unit_test
- c++/src/objtools/blast/seqdb_writer/unit_test/data
- c++/src/objtools/blast/services
- c++/src/objtools/blast/services/unit_test
- c++/src/objtools/cleanup
- c++/src/objtools/data_loaders
- c++/src/objtools/data_loaders/blastdb
- c++/src/objtools/data_loaders/genbank
- c++/src/objtools/data_loaders/genbank/cache
- c++/src/objtools/data_loaders/genbank/gicache
- c++/src/objtools/data_loaders/genbank/id1
- c++/src/objtools/data_loaders/genbank/id2
- c++/src/objtools/data_loaders/genbank/pubseq
- c++/src/objtools/data_loaders/genbank/pubseq2
- c++/src/objtools/format
- c++/src/objtools/readers
- c++/src/objtools/seqmasks_io
- c++/src/objtools/simple
- c++/src/serial
- c++/src/serial/datatool
- c++/src/serial/datatool/testdata
- c++/src/serial/datatool/testdata/data
- c++/src/serial/datatool/testdata/res
- c++/src/util
- c++/src/util/bitset
- c++/src/util/compress
- c++/src/util/compress/api
- c++/src/util/compress/bzip2
- c++/src/util/compress/zlib
- c++/src/util/creaders
- c++/src/util/regexp
- c++/src/util/regexp/testdata
- c++/src/util/sequtil
- c++/src/util/tables
- c++/src/util/xregexp
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