#ifndef _objmacro_ #define _objmacro_ #undef NLM_EXTERN #ifdef NLM_IMPORT #define NLM_EXTERN NLM_IMPORT #else #define NLM_EXTERN extern #endif #ifdef __cplusplus extern "C" { /* } */ #endif /************************************************** * * Generated objects for Module NCBI-Macro * Generated using ASNCODE Revision: 6.19 at Jun 6, 2012 10:06 AM * **************************************************/ NLM_EXTERN Boolean LIBCALL objmacroAsnLoad PROTO((void)); /************************************************** * * AECRAction * **************************************************/ typedef struct struct_AECR_action { ValNodePtr action; Uint1 also_change_mrna; ValNodePtr constraint; } AECRAction, PNTR AECRActionPtr; NLM_EXTERN AECRActionPtr LIBCALL AECRActionFree PROTO ((AECRActionPtr )); NLM_EXTERN AECRActionPtr LIBCALL AECRActionNew PROTO (( void )); NLM_EXTERN AECRActionPtr LIBCALL AECRActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL AECRActionAsnWrite PROTO (( AECRActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ParseAction * **************************************************/ typedef struct struct_Parse_action { struct struct_Text_portion PNTR portion; ValNodePtr src; ValNodePtr dest; Uint2 capitalization; Uint1 remove_from_parsed; ValNodePtr transform; Uint2 existing_text; } ParseAction, PNTR ParseActionPtr; NLM_EXTERN ParseActionPtr LIBCALL ParseActionFree PROTO ((ParseActionPtr )); NLM_EXTERN ParseActionPtr LIBCALL ParseActionNew PROTO (( void )); NLM_EXTERN ParseActionPtr LIBCALL ParseActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ParseActionAsnWrite PROTO (( ParseActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MacroActionList * **************************************************/ typedef ValNode MacroActionList; typedef ValNodePtr MacroActionListPtr; #define MacroActionListNew() ValNodeNew(NULL) #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListFree PROTO ((MacroActionListPtr )); NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListNew PROTO (( void )); NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MacroActionListAsnWrite PROTO (( MacroActionListPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /************************************************** * * SuspectRuleSet * **************************************************/ typedef struct struct_Suspect_rule SuspectRuleSet; typedef struct struct_Suspect_rule PNTR SuspectRuleSetPtr; #define SuspectRuleSetNew() Suspect_ruleNew() #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN SuspectRuleSetPtr LIBCALL SuspectRuleSetFree PROTO ((SuspectRuleSetPtr )); NLM_EXTERN SuspectRuleSetPtr LIBCALL SuspectRuleSetNew PROTO (( void )); NLM_EXTERN SuspectRuleSetPtr LIBCALL SuspectRuleSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SuspectRuleSetAsnWrite PROTO (( SuspectRuleSetPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /* following #defines are for enumerated type, not used by object loaders */ #define String_location_contains 1 #define String_location_equals 2 #define String_location_starts 3 #define String_location_ends 4 #define String_location_inlist 5 /************************************************** * * WordSubstitution * **************************************************/ typedef struct struct_Word_substitution { struct struct_Word_substitution PNTR next; CharPtr word; ValNodePtr synonyms; Uint1 case_sensitive; Uint1 whole_word; } WordSubstitution, PNTR WordSubstitutionPtr; NLM_EXTERN WordSubstitutionPtr LIBCALL WordSubstitutionFree PROTO ((WordSubstitutionPtr )); NLM_EXTERN WordSubstitutionPtr LIBCALL WordSubstitutionNew PROTO (( void )); NLM_EXTERN WordSubstitutionPtr LIBCALL WordSubstitutionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL WordSubstitutionAsnWrite PROTO (( WordSubstitutionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * WordSubstitutionSet * **************************************************/ typedef struct struct_Word_substitution WordSubstitutionSet; typedef struct struct_Word_substitution PNTR WordSubstitutionSetPtr; #define WordSubstitutionSetNew() Word_substitutionNew() #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN WordSubstitutionSetPtr LIBCALL WordSubstitutionSetFree PROTO ((WordSubstitutionSetPtr )); NLM_EXTERN WordSubstitutionSetPtr LIBCALL WordSubstitutionSetNew PROTO (( void )); NLM_EXTERN WordSubstitutionSetPtr LIBCALL WordSubstitutionSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL WordSubstitutionSetAsnWrite PROTO (( WordSubstitutionSetPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /************************************************** * * StringConstraint * **************************************************/ typedef struct struct_String_constraint { struct struct_String_constraint PNTR next; CharPtr match_text; Uint2 match_location; Uint1 case_sensitive; Uint1 ignore_space; Uint1 ignore_punct; struct struct_Word_substitution PNTR ignore_words; Uint1 whole_word; Uint1 not_present; Uint1 is_all_caps; Uint1 is_all_lower; Uint1 is_all_punct; Uint1 ignore_weasel; } StringConstraint, PNTR StringConstraintPtr; NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintFree PROTO ((StringConstraintPtr )); NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintNew PROTO (( void )); NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL StringConstraintAsnWrite PROTO (( StringConstraintPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * StringConstraintSet * **************************************************/ typedef struct struct_String_constraint StringConstraintSet; typedef struct struct_String_constraint PNTR StringConstraintSetPtr; #define StringConstraintSetNew() String_constraintNew() #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN StringConstraintSetPtr LIBCALL StringConstraintSetFree PROTO ((StringConstraintSetPtr )); NLM_EXTERN StringConstraintSetPtr LIBCALL StringConstraintSetNew PROTO (( void )); NLM_EXTERN StringConstraintSetPtr LIBCALL StringConstraintSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL StringConstraintSetAsnWrite PROTO (( StringConstraintSetPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /* following #defines are for enumerated type, not used by object loaders */ #define Strand_constraint_any 0 #define Strand_constraint_plus 1 #define Strand_constraint_minus 2 /* following #defines are for enumerated type, not used by object loaders */ #define Seqtype_constraint_any 0 #define Seqtype_constraint_nuc 1 #define Seqtype_constraint_prot 2 /* following #defines are for enumerated type, not used by object loaders */ #define Partial_constraint_either 0 #define Partial_constraint_partial 1 #define Partial_constraint_complete 2 /* following #defines are for enumerated type, not used by object loaders */ #define Location_type_constraint_any 0 #define Location_type_constraint_single_interval 1 #define Location_type_constraint_joined 2 #define Location_type_constraint_ordered 3 typedef ValNodePtr LocationPosConstraintPtr; typedef ValNode LocationPosConstraint; #define LocationPosConstraint_dist_from_end 1 #define LocationPosConstraint_max_dist_from_end 2 #define LocationPosConstraint_min_dist_from_end 3 NLM_EXTERN LocationPosConstraintPtr LIBCALL LocationPosConstraintFree PROTO ((LocationPosConstraintPtr )); NLM_EXTERN LocationPosConstraintPtr LIBCALL LocationPosConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL LocationPosConstraintAsnWrite PROTO (( LocationPosConstraintPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * LocationConstraint * **************************************************/ typedef struct struct_Location_constraint { Uint2 strand; Uint2 seq_type; Uint2 partial5; Uint2 partial3; Uint2 location_type; ValNodePtr end5; ValNodePtr end3; } LocationConstraint, PNTR LocationConstraintPtr; NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintFree PROTO ((LocationConstraintPtr )); NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintNew PROTO (( void )); NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL LocationConstraintAsnWrite PROTO (( LocationConstraintPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Object_type_constraint_any 0 #define Object_type_constraint_feature 1 #define Object_type_constraint_descriptor 2 /* following #defines are for enumerated type, not used by object loaders */ #define Macro_feature_type_any 0 #define Macro_feature_type_gene 1 #define Macro_feature_type_org 2 #define Macro_feature_type_cds 3 #define Macro_feature_type_prot 4 #define Macro_feature_type_preRNA 5 #define Macro_feature_type_mRNA 6 #define Macro_feature_type_tRNA 7 #define Macro_feature_type_rRNA 8 #define Macro_feature_type_snRNA 9 #define Macro_feature_type_scRNA 10 #define Macro_feature_type_otherRNA 11 #define Macro_feature_type_pub 12 #define Macro_feature_type_seq 13 #define Macro_feature_type_imp 14 #define Macro_feature_type_allele 15 #define Macro_feature_type_attenuator 16 #define Macro_feature_type_c_region 17 #define Macro_feature_type_caat_signal 18 #define Macro_feature_type_imp_CDS 19 #define Macro_feature_type_conflict 20 #define Macro_feature_type_d_loop 21 #define Macro_feature_type_d_segment 22 #define Macro_feature_type_enhancer 23 #define Macro_feature_type_exon 24 #define Macro_feature_type_gC_signal 25 #define Macro_feature_type_iDNA 26 #define Macro_feature_type_intron 27 #define Macro_feature_type_j_segment 28 #define Macro_feature_type_ltr 29 #define Macro_feature_type_mat_peptide 30 #define Macro_feature_type_misc_binding 31 #define Macro_feature_type_misc_difference 32 #define Macro_feature_type_misc_feature 33 #define Macro_feature_type_misc_recomb 34 #define Macro_feature_type_misc_RNA 35 #define Macro_feature_type_misc_signal 36 #define Macro_feature_type_misc_structure 37 #define Macro_feature_type_modified_base 38 #define Macro_feature_type_mutation 39 #define Macro_feature_type_n_region 40 #define Macro_feature_type_old_sequence 41 #define Macro_feature_type_polyA_signal 42 #define Macro_feature_type_polyA_site 43 #define Macro_feature_type_precursor_RNA 44 #define Macro_feature_type_prim_transcript 45 #define Macro_feature_type_primer_bind 46 #define Macro_feature_type_promoter 47 #define Macro_feature_type_protein_bind 48 #define Macro_feature_type_rbs 49 #define Macro_feature_type_repeat_region 50 #define Macro_feature_type_rep_origin 51 #define Macro_feature_type_s_region 52 #define Macro_feature_type_sig_peptide 53 #define Macro_feature_type_source 54 #define Macro_feature_type_stem_loop 55 #define Macro_feature_type_sts 56 #define Macro_feature_type_tata_signal 57 #define Macro_feature_type_terminator 58 #define Macro_feature_type_transit_peptide 59 #define Macro_feature_type_unsure 60 #define Macro_feature_type_v_region 61 #define Macro_feature_type_v_segment 62 #define Macro_feature_type_variation 63 #define Macro_feature_type_virion 64 #define Macro_feature_type_n3clip 65 #define Macro_feature_type_n3UTR 66 #define Macro_feature_type_n5clip 67 #define Macro_feature_type_n5UTR 68 #define Macro_feature_type_n10_signal 69 #define Macro_feature_type_n35_signal 70 #define Macro_feature_type_site_ref 71 #define Macro_feature_type_region 72 #define Macro_feature_type_comment 73 #define Macro_feature_type_bond 74 #define Macro_feature_type_site 75 #define Macro_feature_type_rsite 76 #define Macro_feature_type_user 77 #define Macro_feature_type_txinit 78 #define Macro_feature_type_num 79 #define Macro_feature_type_psec_str 80 #define Macro_feature_type_non_std_residue 81 #define Macro_feature_type_het 82 #define Macro_feature_type_biosrc 83 #define Macro_feature_type_preprotein 84 #define Macro_feature_type_mat_peptide_aa 85 #define Macro_feature_type_sig_peptide_aa 86 #define Macro_feature_type_transit_peptide_aa 87 #define Macro_feature_type_snoRNA 88 #define Macro_feature_type_gap 89 #define Macro_feature_type_operon 90 #define Macro_feature_type_oriT 91 #define Macro_feature_type_ncRNA 92 #define Macro_feature_type_tmRNA 93 #define Macro_feature_type_mobile_element 94 /* following #defines are for enumerated type, not used by object loaders */ #define Feat_qual_legal_allele 1 #define Feat_qual_legal_activity 2 #define Feat_qual_legal_anticodon 3 #define Feat_qual_legal_bound_moiety 4 #define Feat_qual_legal_chromosome 5 #define Feat_qual_legal_citation 6 #define Feat_qual_legal_codon 7 #define Feat_qual_legal_codon_start 8 #define Feat_qual_legal_codons_recognized 9 #define Feat_qual_legal_compare 10 #define Feat_qual_legal_cons_splice 11 #define Feat_qual_legal_db_xref 12 #define Feat_qual_legal_description 13 #define Feat_qual_legal_direction 14 #define Feat_qual_legal_ec_number 15 #define Feat_qual_legal_environmental_sample 16 #define Feat_qual_legal_evidence 17 #define Feat_qual_legal_exception 18 #define Feat_qual_legal_experiment 19 #define Feat_qual_legal_focus 20 #define Feat_qual_legal_frequency 21 #define Feat_qual_legal_function 22 #define Feat_qual_legal_gene 23 #define Feat_qual_legal_gene_description 24 #define Feat_qual_legal_inference 25 #define Feat_qual_legal_label 26 #define Feat_qual_legal_locus_tag 27 #define Feat_qual_legal_map 28 #define Feat_qual_legal_mobile_element 29 #define Feat_qual_legal_mod_base 30 #define Feat_qual_legal_mol_type 31 #define Feat_qual_legal_ncRNA_class 32 #define Feat_qual_legal_note 33 #define Feat_qual_legal_number 34 #define Feat_qual_legal_old_locus_tag 35 #define Feat_qual_legal_operon 36 #define Feat_qual_legal_organism 37 #define Feat_qual_legal_organelle 38 #define Feat_qual_legal_partial 39 #define Feat_qual_legal_phenotype 40 #define Feat_qual_legal_plasmid 41 #define Feat_qual_legal_product 42 #define Feat_qual_legal_protein_id 43 #define Feat_qual_legal_pseudo 44 #define Feat_qual_legal_rearranged 45 #define Feat_qual_legal_replace 46 #define Feat_qual_legal_rpt_family 47 #define Feat_qual_legal_rpt_type 48 #define Feat_qual_legal_rpt_unit 49 #define Feat_qual_legal_rpt_unit_seq 50 #define Feat_qual_legal_rpt_unit_range 51 #define Feat_qual_legal_segment 52 #define Feat_qual_legal_sequenced_mol 53 #define Feat_qual_legal_standard_name 54 #define Feat_qual_legal_synonym 55 #define Feat_qual_legal_transcript_id 56 #define Feat_qual_legal_transgenic 57 #define Feat_qual_legal_translation 58 #define Feat_qual_legal_transl_except 59 #define Feat_qual_legal_transl_table 60 #define Feat_qual_legal_usedin 61 #define Feat_qual_legal_mobile_element_type 62 #define Feat_qual_legal_mobile_element_name 63 #define Feat_qual_legal_gene_comment 64 #define Feat_qual_legal_satellite 65 #define Feat_qual_legal_satellite_type 66 #define Feat_qual_legal_satellite_name 67 #define Feat_qual_legal_location 68 #define Feat_qual_legal_tag_peptide 69 #define Feat_qual_legal_mobile_element_type_type 70 #define Feat_qual_legal_name 71 /************************************************** * * FeatQualLegalVal * **************************************************/ typedef struct struct_Feat_qual_legal_val { Uint2 qual; CharPtr val; } FeatQualLegalVal, PNTR FeatQualLegalValPtr; NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValFree PROTO ((FeatQualLegalValPtr )); NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValNew PROTO (( void )); NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FeatQualLegalValAsnWrite PROTO (( FeatQualLegalValPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr FeatQualLegalValChoicePtr; typedef ValNode FeatQualLegalValChoice; #define FeatQualLegalValChoice_qual 1 NLM_EXTERN FeatQualLegalValChoicePtr LIBCALL FeatQualLegalValChoiceFree PROTO ((FeatQualLegalValChoicePtr )); NLM_EXTERN FeatQualLegalValChoicePtr LIBCALL FeatQualLegalValChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FeatQualLegalValChoiceAsnWrite PROTO (( FeatQualLegalValChoicePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * FeatQualLegalSet * **************************************************/ typedef ValNode FeatQualLegalSet; typedef ValNodePtr FeatQualLegalSetPtr; #define FeatQualLegalSetNew() ValNodeNew(NULL) #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetFree PROTO ((FeatQualLegalSetPtr )); NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetNew PROTO (( void )); NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FeatQualLegalSetAsnWrite PROTO (( FeatQualLegalSetPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ typedef ValNodePtr FeatQualChoicePtr; typedef ValNode FeatQualChoice; #define FeatQualChoice_legal_qual 1 #define FeatQualChoice_illegal_qual 2 NLM_EXTERN FeatQualChoicePtr LIBCALL FeatQualChoiceFree PROTO ((FeatQualChoicePtr )); NLM_EXTERN FeatQualChoicePtr LIBCALL FeatQualChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FeatQualChoiceAsnWrite PROTO (( FeatQualChoicePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * FeatureField * **************************************************/ typedef struct struct_Feature_field { Uint2 type; ValNodePtr field; } FeatureField, PNTR FeatureFieldPtr; NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldFree PROTO ((FeatureFieldPtr )); NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldNew PROTO (( void )); NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FeatureFieldAsnWrite PROTO (( FeatureFieldPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * FeatureFieldLegal * **************************************************/ typedef struct struct_Feature_field_legal { Uint2 type; Uint2 field; } FeatureFieldLegal, PNTR FeatureFieldLegalPtr; NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalFree PROTO ((FeatureFieldLegalPtr )); NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalNew PROTO (( void )); NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FeatureFieldLegalAsnWrite PROTO (( FeatureFieldLegalPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * FeatureFieldPair * **************************************************/ typedef struct struct_Feature_field_pair { Uint2 type; ValNodePtr field_from; ValNodePtr field_to; } FeatureFieldPair, PNTR FeatureFieldPairPtr; NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairFree PROTO ((FeatureFieldPairPtr )); NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairNew PROTO (( void )); NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FeatureFieldPairAsnWrite PROTO (( FeatureFieldPairPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr RnaFeatTypePtr; typedef ValNode RnaFeatType; #define RnaFeatType_any 1 #define RnaFeatType_preRNA 2 #define RnaFeatType_mRNA 3 #define RnaFeatType_tRNA 4 #define RnaFeatType_rRNA 5 #define RnaFeatType_ncRNA 6 #define RnaFeatType_tmRNA 7 #define RnaFeatType_miscRNA 8 NLM_EXTERN RnaFeatTypePtr LIBCALL RnaFeatTypeFree PROTO ((RnaFeatTypePtr )); NLM_EXTERN RnaFeatTypePtr LIBCALL RnaFeatTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RnaFeatTypeAsnWrite PROTO (( RnaFeatTypePtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Rna_field_product 1 #define Rna_field_comment 2 #define Rna_field_codons_recognized 3 #define Rna_field_ncrna_class 4 #define Rna_field_anticodon 5 #define Rna_field_transcript_id 6 #define Rna_field_gene_locus 7 #define Rna_field_gene_description 8 #define Rna_field_gene_maploc 9 #define Rna_field_gene_locus_tag 10 #define Rna_field_gene_synonym 11 #define Rna_field_gene_comment 12 #define Rna_field_tag_peptide 13 /************************************************** * * RnaQual * **************************************************/ typedef struct struct_Rna_qual { ValNodePtr type; Uint2 field; } RnaQual, PNTR RnaQualPtr; NLM_EXTERN RnaQualPtr LIBCALL RnaQualFree PROTO ((RnaQualPtr )); NLM_EXTERN RnaQualPtr LIBCALL RnaQualNew PROTO (( void )); NLM_EXTERN RnaQualPtr LIBCALL RnaQualAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RnaQualAsnWrite PROTO (( RnaQualPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * RnaQualPair * **************************************************/ typedef struct struct_Rna_qual_pair { ValNodePtr type; Uint2 field_from; Uint2 field_to; } RnaQualPair, PNTR RnaQualPairPtr; NLM_EXTERN RnaQualPairPtr LIBCALL RnaQualPairFree PROTO ((RnaQualPairPtr )); NLM_EXTERN RnaQualPairPtr LIBCALL RnaQualPairNew PROTO (( void )); NLM_EXTERN RnaQualPairPtr LIBCALL RnaQualPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RnaQualPairAsnWrite PROTO (( RnaQualPairPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Source_qual_acronym 1 #define Source_qual_anamorph 2 #define Source_qual_authority 3 #define Source_qual_bio_material 4 #define Source_qual_biotype 5 #define Source_qual_biovar 6 #define Source_qual_breed 7 #define Source_qual_cell_line 8 #define Source_qual_cell_type 9 #define Source_qual_chemovar 10 #define Source_qual_chromosome 11 #define Source_qual_clone 12 #define Source_qual_clone_lib 13 #define Source_qual_collected_by 14 #define Source_qual_collection_date 15 #define Source_qual_common 16 #define Source_qual_common_name 17 #define Source_qual_country 18 #define Source_qual_cultivar 19 #define Source_qual_culture_collection 20 #define Source_qual_dev_stage 21 #define Source_qual_division 22 #define Source_qual_dosage 23 #define Source_qual_ecotype 24 #define Source_qual_endogenous_virus_name 25 #define Source_qual_environmental_sample 26 #define Source_qual_forma 27 #define Source_qual_forma_specialis 28 #define Source_qual_frequency 29 #define Source_qual_fwd_primer_name 30 #define Source_qual_fwd_primer_seq 31 #define Source_qual_gb_acronym 32 #define Source_qual_gb_anamorph 33 #define Source_qual_gb_synonym 34 #define Source_qual_genotype 35 #define Source_qual_germline 36 #define Source_qual_group 37 #define Source_qual_haplotype 38 #define Source_qual_identified_by 39 #define Source_qual_insertion_seq_name 40 #define Source_qual_isolate 41 #define Source_qual_isolation_source 42 #define Source_qual_lab_host 43 #define Source_qual_lat_lon 44 #define Source_qual_lineage 45 #define Source_qual_map 46 #define Source_qual_metagenome_source 47 #define Source_qual_metagenomic 48 #define Source_qual_old_lineage 49 #define Source_qual_old_name 50 #define Source_qual_orgmod_note 51 #define Source_qual_nat_host 52 #define Source_qual_pathovar 53 #define Source_qual_plasmid_name 54 #define Source_qual_plastid_name 55 #define Source_qual_pop_variant 56 #define Source_qual_rearranged 57 #define Source_qual_rev_primer_name 58 #define Source_qual_rev_primer_seq 59 #define Source_qual_segment 60 #define Source_qual_serogroup 61 #define Source_qual_serotype 62 #define Source_qual_serovar 63 #define Source_qual_sex 64 #define Source_qual_specimen_voucher 65 #define Source_qual_strain 66 #define Source_qual_subclone 67 #define Source_qual_subgroup 68 #define Source_qual_subsource_note 69 #define Source_qual_sub_species 70 #define Source_qual_substrain 71 #define Source_qual_subtype 72 #define Source_qual_synonym 73 #define Source_qual_taxname 74 #define Source_qual_teleomorph 75 #define Source_qual_tissue_lib 76 #define Source_qual_tissue_type 77 #define Source_qual_transgenic 78 #define Source_qual_transposon_name 79 #define Source_qual_type 80 #define Source_qual_variety 81 #define Source_qual_specimen_voucher_INST 82 #define Source_qual_specimen_voucher_COLL 83 #define Source_qual_specimen_voucher_SpecID 84 #define Source_qual_culture_collection_INST 85 #define Source_qual_culture_collection_COLL 86 #define Source_qual_culture_collection_SpecID 87 #define Source_qual_bio_material_INST 88 #define Source_qual_bio_material_COLL 89 #define Source_qual_bio_material_SpecID 90 #define Source_qual_all_notes 91 #define Source_qual_mating_type 92 #define Source_qual_linkage_group 93 #define Source_qual_haplogroup 94 #define Source_qual_all_quals 95 #define Source_qual_dbxref 96 #define Source_qual_taxid 97 /************************************************** * * SourceQualPair * **************************************************/ typedef struct struct_Source_qual_pair { Uint2 field_from; Uint2 field_to; } SourceQualPair, PNTR SourceQualPairPtr; NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairFree PROTO ((SourceQualPairPtr )); NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairNew PROTO (( void )); NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SourceQualPairAsnWrite PROTO (( SourceQualPairPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Source_location_unknown 0 #define Source_location_genomic 1 #define Source_location_chloroplast 2 #define Source_location_chromoplast 3 #define Source_location_kinetoplast 4 #define Source_location_mitochondrion 5 #define Source_location_plastid 6 #define Source_location_macronuclear 7 #define Source_location_extrachrom 8 #define Source_location_plasmid 9 #define Source_location_transposon 10 #define Source_location_insertion_seq 11 #define Source_location_cyanelle 12 #define Source_location_proviral 13 #define Source_location_virion 14 #define Source_location_nucleomorph 15 #define Source_location_apicoplast 16 #define Source_location_leucoplast 17 #define Source_location_proplastid 18 #define Source_location_endogenous_virus 19 #define Source_location_hydrogenosome 20 #define Source_location_chromosome 21 #define Source_location_chromatophore 22 /* following #defines are for enumerated type, not used by object loaders */ #define Source_origin_unknown 0 #define Source_origin_natural 1 #define Source_origin_natmut 2 #define Source_origin_mut 3 #define Source_origin_artificial 4 #define Source_origin_synthetic 5 #define Source_origin_other 255 typedef ValNodePtr SourceQualChoicePtr; typedef ValNode SourceQualChoice; #define SourceQualChoice_textqual 1 #define SourceQualChoice_location 2 #define SourceQualChoice_origin 3 #define SourceQualChoice_gcode 4 #define SourceQualChoice_mgcode 5 NLM_EXTERN SourceQualChoicePtr LIBCALL SourceQualChoiceFree PROTO ((SourceQualChoicePtr )); NLM_EXTERN SourceQualChoicePtr LIBCALL SourceQualChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SourceQualChoiceAsnWrite PROTO (( SourceQualChoicePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * SourceQualTextVal * **************************************************/ typedef struct struct_Source_qual_text_val { Uint2 srcqual; CharPtr val; } SourceQualTextVal, PNTR SourceQualTextValPtr; NLM_EXTERN SourceQualTextValPtr LIBCALL SourceQualTextValFree PROTO ((SourceQualTextValPtr )); NLM_EXTERN SourceQualTextValPtr LIBCALL SourceQualTextValNew PROTO (( void )); NLM_EXTERN SourceQualTextValPtr LIBCALL SourceQualTextValAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SourceQualTextValAsnWrite PROTO (( SourceQualTextValPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr SourceQualValChoicePtr; typedef ValNode SourceQualValChoice; #define SourceQualValChoice_textqual 1 #define SourceQualValChoice_location 2 #define SourceQualValChoice_origin 3 #define SourceQualValChoice_gcode 4 #define SourceQualValChoice_mgcode 5 NLM_EXTERN SourceQualValChoicePtr LIBCALL SourceQualValChoiceFree PROTO ((SourceQualValChoicePtr )); NLM_EXTERN SourceQualValChoicePtr LIBCALL SourceQualValChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SourceQualValChoiceAsnWrite PROTO (( SourceQualValChoicePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * SourceQualValSet * **************************************************/ typedef ValNode SourceQualValSet; typedef ValNodePtr SourceQualValSetPtr; #define SourceQualValSetNew() ValNodeNew(NULL) #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN SourceQualValSetPtr LIBCALL SourceQualValSetFree PROTO ((SourceQualValSetPtr )); NLM_EXTERN SourceQualValSetPtr LIBCALL SourceQualValSetNew PROTO (( void )); NLM_EXTERN SourceQualValSetPtr LIBCALL SourceQualValSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SourceQualValSetAsnWrite PROTO (( SourceQualValSetPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /* following #defines are for enumerated type, not used by object loaders */ #define CDSGeneProt_field_cds_comment 1 #define CDSGeneProt_field_gene_locus 2 #define CDSGeneProt_field_gene_description 3 #define CDSGeneProt_field_gene_comment 4 #define CDSGeneProt_field_gene_allele 5 #define CDSGeneProt_field_gene_maploc 6 #define CDSGeneProt_field_gene_locus_tag 7 #define CDSGeneProt_field_gene_synonym 8 #define CDSGeneProt_field_gene_old_locus_tag 9 #define CDSGeneProt_field_mrna_product 10 #define CDSGeneProt_field_mrna_comment 11 #define CDSGeneProt_field_prot_name 12 #define CDSGeneProt_field_prot_description 13 #define CDSGeneProt_field_prot_ec_number 14 #define CDSGeneProt_field_prot_activity 15 #define CDSGeneProt_field_prot_comment 16 #define CDSGeneProt_field_mat_peptide_name 17 #define CDSGeneProt_field_mat_peptide_description 18 #define CDSGeneProt_field_mat_peptide_ec_number 19 #define CDSGeneProt_field_mat_peptide_activity 20 #define CDSGeneProt_field_mat_peptide_comment 21 #define CDSGeneProt_field_cds_inference 22 #define CDSGeneProt_field_gene_inference 23 #define CDSGeneProt_field_codon_start 24 /************************************************** * * CDSGeneProtFieldPair * **************************************************/ typedef struct struct_CDSGeneProt_field_pair { Uint2 field_from; Uint2 field_to; } CDSGeneProtFieldPair, PNTR CDSGeneProtFieldPairPtr; NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairFree PROTO ((CDSGeneProtFieldPairPtr )); NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairNew PROTO (( void )); NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL CDSGeneProtFieldPairAsnWrite PROTO (( CDSGeneProtFieldPairPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Molecule_type_unknown 0 #define Molecule_type_genomic 1 #define Molecule_type_precursor_RNA 2 #define Molecule_type_mRNA 3 #define Molecule_type_rRNA 4 #define Molecule_type_tRNA 5 #define Molecule_type_genomic_mRNA 6 #define Molecule_type_cRNA 7 #define Molecule_type_transcribed_RNA 8 #define Molecule_type_ncRNA 9 #define Molecule_type_transfer_messenger_RNA 10 #define Molecule_type_macro_other 11 /* following #defines are for enumerated type, not used by object loaders */ #define Technique_type_unknown 0 #define Technique_type_standard 1 #define Technique_type_est 2 #define Technique_type_sts 3 #define Technique_type_survey 4 #define Technique_type_genetic_map 5 #define Technique_type_physical_map 6 #define Technique_type_derived 7 #define Technique_type_concept_trans 8 #define Technique_type_seq_pept 9 #define Technique_type_both 10 #define Technique_type_seq_pept_overlap 11 #define Technique_type_seq_pept_homol 12 #define Technique_type_concept_trans_a 13 #define Technique_type_htgs_1 14 #define Technique_type_htgs_2 15 #define Technique_type_htgs_3 16 #define Technique_type_fli_cDNA 17 #define Technique_type_htgs_0 18 #define Technique_type_htc 19 #define Technique_type_wgs 20 #define Technique_type_barcode 21 #define Technique_type_composite_wgs_htgs 22 #define Technique_type_tsa 23 #define Technique_type_other 24 /* following #defines are for enumerated type, not used by object loaders */ #define Completedness_type_unknown 0 #define Completedness_type_complete 1 #define Completedness_type_partial 2 #define Completedness_type_no_left 3 #define Completedness_type_no_right 4 #define Completedness_type_no_ends 5 #define Completedness_type_has_left 6 #define Completedness_type_has_right 7 #define Completedness_type_other 6 /* following #defines are for enumerated type, not used by object loaders */ #define Molecule_class_type_unknown 0 #define Molecule_class_type_dna 1 #define Molecule_class_type_rna 2 #define Molecule_class_type_protein 3 #define Molecule_class_type_nucleotide 4 #define Molecule_class_type_other 5 /* following #defines are for enumerated type, not used by object loaders */ #define Topology_type_unknown 0 #define Topology_type_linear 1 #define Topology_type_circular 2 #define Topology_type_tandem 3 #define Topology_type_other 4 /* following #defines are for enumerated type, not used by object loaders */ #define Strand_type_unknown 0 #define Strand_type_single 1 #define Strand_type_double__ 2 #define Strand_type_mixed 3 #define Strand_type_mixed_rev 4 #define Strand_type_other 5 typedef ValNodePtr MolinfoFieldPtr; typedef ValNode MolinfoField; #define MolinfoField_molecule 1 #define MolinfoField_technique 2 #define MolinfoField_completedness 3 #define MolinfoField_mol_class 4 #define MolinfoField_topology 5 #define MolinfoField_strand 6 NLM_EXTERN MolinfoFieldPtr LIBCALL MolinfoFieldFree PROTO ((MolinfoFieldPtr )); NLM_EXTERN MolinfoFieldPtr LIBCALL MolinfoFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoFieldAsnWrite PROTO (( MolinfoFieldPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MolinfoMoleculePair * **************************************************/ typedef struct struct_Molinfo_molecule_pair { Uint2 from; Uint2 to; } MolinfoMoleculePair, PNTR MolinfoMoleculePairPtr; NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairFree PROTO ((MolinfoMoleculePairPtr )); NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairNew PROTO (( void )); NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoMoleculePairAsnWrite PROTO (( MolinfoMoleculePairPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MolinfoTechniquePair * **************************************************/ typedef struct struct_Molinfo_technique_pair { Uint2 from; Uint2 to; } MolinfoTechniquePair, PNTR MolinfoTechniquePairPtr; NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairFree PROTO ((MolinfoTechniquePairPtr )); NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairNew PROTO (( void )); NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoTechniquePairAsnWrite PROTO (( MolinfoTechniquePairPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MolinfoCompletednessPair * **************************************************/ typedef struct struct_Molinfo_completedness_pair { Uint2 from; Uint2 to; } MolinfoCompletednessPair, PNTR MolinfoCompletednessPairPtr; NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairFree PROTO ((MolinfoCompletednessPairPtr )); NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairNew PROTO (( void )); NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoCompletednessPairAsnWrite PROTO (( MolinfoCompletednessPairPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MolinfoMolClassPair * **************************************************/ typedef struct struct_Molinfo_mol_class_pair { Uint2 from; Uint2 to; } MolinfoMolClassPair, PNTR MolinfoMolClassPairPtr; NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairFree PROTO ((MolinfoMolClassPairPtr )); NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairNew PROTO (( void )); NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoMolClassPairAsnWrite PROTO (( MolinfoMolClassPairPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MolinfoTopologyPair * **************************************************/ typedef struct struct_Molinfo_topology_pair { Uint2 from; Uint2 to; } MolinfoTopologyPair, PNTR MolinfoTopologyPairPtr; NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairFree PROTO ((MolinfoTopologyPairPtr )); NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairNew PROTO (( void )); NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoTopologyPairAsnWrite PROTO (( MolinfoTopologyPairPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MolinfoStrandPair * **************************************************/ typedef struct struct_Molinfo_strand_pair { Uint2 from; Uint2 to; } MolinfoStrandPair, PNTR MolinfoStrandPairPtr; NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairFree PROTO ((MolinfoStrandPairPtr )); NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairNew PROTO (( void )); NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoStrandPairAsnWrite PROTO (( MolinfoStrandPairPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr MolinfoFieldPairPtr; typedef ValNode MolinfoFieldPair; #define MolinfoFieldPair_molecule 1 #define MolinfoFieldPair_technique 2 #define MolinfoFieldPair_completedness 3 #define MolinfoFieldPair_mol_class 4 #define MolinfoFieldPair_topology 5 #define MolinfoFieldPair_strand 6 NLM_EXTERN MolinfoFieldPairPtr LIBCALL MolinfoFieldPairFree PROTO ((MolinfoFieldPairPtr )); NLM_EXTERN MolinfoFieldPairPtr LIBCALL MolinfoFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoFieldPairAsnWrite PROTO (( MolinfoFieldPairPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MolinfoFieldList * **************************************************/ typedef ValNode MolinfoFieldList; typedef ValNodePtr MolinfoFieldListPtr; #define MolinfoFieldListNew() ValNodeNew(NULL) #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN MolinfoFieldListPtr LIBCALL MolinfoFieldListFree PROTO ((MolinfoFieldListPtr )); NLM_EXTERN MolinfoFieldListPtr LIBCALL MolinfoFieldListNew PROTO (( void )); NLM_EXTERN MolinfoFieldListPtr LIBCALL MolinfoFieldListAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoFieldListAsnWrite PROTO (( MolinfoFieldListPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /************************************************** * * MolinfoFieldConstraint * **************************************************/ typedef struct struct_Molinfo_field_constraint { ValNodePtr field; Uint1 is_not; } MolinfoFieldConstraint, PNTR MolinfoFieldConstraintPtr; NLM_EXTERN MolinfoFieldConstraintPtr LIBCALL MolinfoFieldConstraintFree PROTO ((MolinfoFieldConstraintPtr )); NLM_EXTERN MolinfoFieldConstraintPtr LIBCALL MolinfoFieldConstraintNew PROTO (( void )); NLM_EXTERN MolinfoFieldConstraintPtr LIBCALL MolinfoFieldConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoFieldConstraintAsnWrite PROTO (( MolinfoFieldConstraintPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Publication_field_cit 1 #define Publication_field_authors 2 #define Publication_field_journal 3 #define Publication_field_volume 4 #define Publication_field_issue 5 #define Publication_field_pages 6 #define Publication_field_date 7 #define Publication_field_serial_number 8 #define Publication_field_title 9 #define Publication_field_affiliation 10 #define Publication_field_affil_div 11 #define Publication_field_affil_city 12 #define Publication_field_affil_sub 13 #define Publication_field_affil_country 14 #define Publication_field_affil_street 15 #define Publication_field_affil_email 16 #define Publication_field_affil_fax 17 #define Publication_field_affil_phone 18 #define Publication_field_affil_zipcode 19 #define Publication_field_authors_initials 20 typedef ValNodePtr StructuredCommentFieldPtr; typedef ValNode StructuredCommentField; #define StructuredCommentField_database 1 #define StructuredCommentField_named 2 #define StructuredCommentField_field_name 3 NLM_EXTERN StructuredCommentFieldPtr LIBCALL StructuredCommentFieldFree PROTO ((StructuredCommentFieldPtr )); NLM_EXTERN StructuredCommentFieldPtr LIBCALL StructuredCommentFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL StructuredCommentFieldAsnWrite PROTO (( StructuredCommentFieldPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * StructuredCommentFieldPair * **************************************************/ typedef struct struct_Structured_comment_field_pair { ValNodePtr from; ValNodePtr to; } StructuredCommentFieldPair, PNTR StructuredCommentFieldPairPtr; NLM_EXTERN StructuredCommentFieldPairPtr LIBCALL StructuredCommentFieldPairFree PROTO ((StructuredCommentFieldPairPtr )); NLM_EXTERN StructuredCommentFieldPairPtr LIBCALL StructuredCommentFieldPairNew PROTO (( void )); NLM_EXTERN StructuredCommentFieldPairPtr LIBCALL StructuredCommentFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL StructuredCommentFieldPairAsnWrite PROTO (( StructuredCommentFieldPairPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Misc_field_genome_project_id 1 #define Misc_field_comment_descriptor 2 #define Misc_field_defline 3 #define Misc_field_keyword 4 /* following #defines are for enumerated type, not used by object loaders */ #define DBLink_field_type_trace_assembly 1 #define DBLink_field_type_bio_sample 2 #define DBLink_field_type_probe_db 3 #define DBLink_field_type_sequence_read_archve 4 #define DBLink_field_type_bio_project 5 /************************************************** * * DBLinkFieldPair * **************************************************/ typedef struct struct_DBLink_field_pair { Uint2 from; Uint2 to; } DBLinkFieldPair, PNTR DBLinkFieldPairPtr; NLM_EXTERN DBLinkFieldPairPtr LIBCALL DBLinkFieldPairFree PROTO ((DBLinkFieldPairPtr )); NLM_EXTERN DBLinkFieldPairPtr LIBCALL DBLinkFieldPairNew PROTO (( void )); NLM_EXTERN DBLinkFieldPairPtr LIBCALL DBLinkFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL DBLinkFieldPairAsnWrite PROTO (( DBLinkFieldPairPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Pub_type_any 0 #define Pub_type_published 1 #define Pub_type_unpublished 2 #define Pub_type_in_press 3 #define Pub_type_submitter_block 4 /************************************************** * * PubFieldConstraint * **************************************************/ typedef struct struct_Pub_field_constraint { Uint2 field; struct struct_String_constraint PNTR constraint; } PubFieldConstraint, PNTR PubFieldConstraintPtr; NLM_EXTERN PubFieldConstraintPtr LIBCALL PubFieldConstraintFree PROTO ((PubFieldConstraintPtr )); NLM_EXTERN PubFieldConstraintPtr LIBCALL PubFieldConstraintNew PROTO (( void )); NLM_EXTERN PubFieldConstraintPtr LIBCALL PubFieldConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL PubFieldConstraintAsnWrite PROTO (( PubFieldConstraintPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr PubFieldSpecialConstraintTypePtr; typedef ValNode PubFieldSpecialConstraintType; #define PubFieldSpecialConstraintType_is_present 1 #define PubFieldSpecialConstraintType_is_not_present 2 #define PubFieldSpecialConstraintType_is_all_caps 3 #define PubFieldSpecialConstraintType_is_all_lower 4 #define PubFieldSpecialConstraintType_is_all_punct 5 NLM_EXTERN PubFieldSpecialConstraintTypePtr LIBCALL PubFieldSpecialConstraintTypeFree PROTO ((PubFieldSpecialConstraintTypePtr )); NLM_EXTERN PubFieldSpecialConstraintTypePtr LIBCALL PubFieldSpecialConstraintTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL PubFieldSpecialConstraintTypeAsnWrite PROTO (( PubFieldSpecialConstraintTypePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * PubFieldSpecialConstraint * **************************************************/ typedef struct struct_Pub_field_special_constraint { Uint2 field; ValNodePtr constraint; } PubFieldSpecialConstraint, PNTR PubFieldSpecialConstraintPtr; NLM_EXTERN PubFieldSpecialConstraintPtr LIBCALL PubFieldSpecialConstraintFree PROTO ((PubFieldSpecialConstraintPtr )); NLM_EXTERN PubFieldSpecialConstraintPtr LIBCALL PubFieldSpecialConstraintNew PROTO (( void )); NLM_EXTERN PubFieldSpecialConstraintPtr LIBCALL PubFieldSpecialConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL PubFieldSpecialConstraintAsnWrite PROTO (( PubFieldSpecialConstraintPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * PublicationConstraint * **************************************************/ typedef struct struct_Publication_constraint { Uint2 type; struct struct_Pub_field_constraint PNTR field; struct struct_Pub_field_special_constraint PNTR special_field; } PublicationConstraint, PNTR PublicationConstraintPtr; NLM_EXTERN PublicationConstraintPtr LIBCALL PublicationConstraintFree PROTO ((PublicationConstraintPtr )); NLM_EXTERN PublicationConstraintPtr LIBCALL PublicationConstraintNew PROTO (( void )); NLM_EXTERN PublicationConstraintPtr LIBCALL PublicationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL PublicationConstraintAsnWrite PROTO (( PublicationConstraintPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * SourceConstraint * **************************************************/ typedef struct struct_Source_constraint { ValNodePtr field1; ValNodePtr field2; struct struct_String_constraint PNTR constraint; Uint2 type_constraint; } SourceConstraint, PNTR SourceConstraintPtr; NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintFree PROTO ((SourceConstraintPtr )); NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintNew PROTO (( void )); NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SourceConstraintAsnWrite PROTO (( SourceConstraintPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define CDSGeneProt_feature_type_constraint_gene 1 #define CDSGeneProt_feature_type_constraint_mRNA 2 #define CDSGeneProt_feature_type_constraint_cds 3 #define CDSGeneProt_feature_type_constraint_prot 4 #define CDSGeneProt_feature_type_constraint_exon 5 #define CDSGeneProt_feature_type_constraint_mat_peptide 6 /************************************************** * * CDSGeneProtPseudoConstraint * **************************************************/ typedef struct struct_CDSGeneProt_pseudo_constraint { Uint2 feature; Uint1 is_pseudo; } CDSGeneProtPseudoConstraint, PNTR CDSGeneProtPseudoConstraintPtr; NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintFree PROTO ((CDSGeneProtPseudoConstraintPtr )); NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintNew PROTO (( void )); NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL CDSGeneProtPseudoConstraintAsnWrite PROTO (( CDSGeneProtPseudoConstraintPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr CDSGeneProtConstraintFieldPtr; typedef ValNode CDSGeneProtConstraintField; #define CDSGeneProtConstraintField_field 1 NLM_EXTERN CDSGeneProtConstraintFieldPtr LIBCALL CDSGeneProtConstraintFieldFree PROTO ((CDSGeneProtConstraintFieldPtr )); NLM_EXTERN CDSGeneProtConstraintFieldPtr LIBCALL CDSGeneProtConstraintFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL CDSGeneProtConstraintFieldAsnWrite PROTO (( CDSGeneProtConstraintFieldPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * CDSGeneProtQualConstraint * **************************************************/ typedef struct struct_CDSGeneProt_qual_constraint { ValNodePtr field1; ValNodePtr field2; struct struct_String_constraint PNTR constraint; } CDSGeneProtQualConstraint, PNTR CDSGeneProtQualConstraintPtr; NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintFree PROTO ((CDSGeneProtQualConstraintPtr )); NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintNew PROTO (( void )); NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL CDSGeneProtQualConstraintAsnWrite PROTO (( CDSGeneProtQualConstraintPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * FieldConstraint * **************************************************/ typedef struct struct_Field_constraint { ValNodePtr field; struct struct_String_constraint PNTR string_constraint; } FieldConstraint, PNTR FieldConstraintPtr; NLM_EXTERN FieldConstraintPtr LIBCALL FieldConstraintFree PROTO ((FieldConstraintPtr )); NLM_EXTERN FieldConstraintPtr LIBCALL FieldConstraintNew PROTO (( void )); NLM_EXTERN FieldConstraintPtr LIBCALL FieldConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FieldConstraintAsnWrite PROTO (( FieldConstraintPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr FieldTypePtr; typedef ValNode FieldType; #define FieldType_source_qual 1 #define FieldType_feature_field 2 #define FieldType_rna_field 3 #define FieldType_cds_gene_prot 4 #define FieldType_molinfo_field 5 #define FieldType_pub 6 #define FieldType_struc_comment_field 7 #define FieldType_misc 8 #define FieldType_dblink 9 NLM_EXTERN FieldTypePtr LIBCALL FieldTypeFree PROTO ((FieldTypePtr )); NLM_EXTERN FieldTypePtr LIBCALL FieldTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FieldTypeAsnWrite PROTO (( FieldTypePtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Sequence_constraint_rnamol_any 0 #define Sequence_constraint_rnamol_genomic 1 #define Sequence_constraint_rnamol_precursor_RNA 2 #define Sequence_constraint_rnamol_mRNA 3 #define Sequence_constraint_rnamol_rRNA 4 #define Sequence_constraint_rnamol_tRNA 5 #define Sequence_constraint_rnamol_genomic_mRNA 6 #define Sequence_constraint_rnamol_cRNA 7 #define Sequence_constraint_rnamol_transcribed_RNA 8 #define Sequence_constraint_rnamol_ncRNA 9 #define Sequence_constraint_rnamol_transfer_messenger_RNA 10 typedef ValNodePtr SequenceConstraintMolTypeConstraintPtr; typedef ValNode SequenceConstraintMolTypeConstraint; #define SequenceConstraintMolTypeConstraint_any 1 #define SequenceConstraintMolTypeConstraint_nucleotide 2 #define SequenceConstraintMolTypeConstraint_dna 3 #define SequenceConstraintMolTypeConstraint_rna 4 #define SequenceConstraintMolTypeConstraint_protein 5 NLM_EXTERN SequenceConstraintMolTypeConstraintPtr LIBCALL SequenceConstraintMolTypeConstraintFree PROTO ((SequenceConstraintMolTypeConstraintPtr )); NLM_EXTERN SequenceConstraintMolTypeConstraintPtr LIBCALL SequenceConstraintMolTypeConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SequenceConstraintMolTypeConstraintAsnWrite PROTO (( SequenceConstraintMolTypeConstraintPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr QuantityConstraintPtr; typedef ValNode QuantityConstraint; #define QuantityConstraint_equals 1 #define QuantityConstraint_greater_than 2 #define QuantityConstraint_less_than 3 NLM_EXTERN QuantityConstraintPtr LIBCALL QuantityConstraintFree PROTO ((QuantityConstraintPtr )); NLM_EXTERN QuantityConstraintPtr LIBCALL QuantityConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL QuantityConstraintAsnWrite PROTO (( QuantityConstraintPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Feature_strandedness_constraint_any 0 #define Feature_strandedness_constraint_minus_only 1 #define Feature_strandedness_constraint_plus_only 2 #define Feature_strandedness_constraint_at_least_one_minus 3 #define Feature_strandedness_constraint_at_least_one_plus 4 #define Feature_strandedness_constraint_no_minus 5 #define Feature_strandedness_constraint_no_plus 6 /************************************************** * * SequenceConstraint * **************************************************/ typedef struct struct_Sequence_constraint { ValNodePtr seqtype; struct struct_String_constraint PNTR id; Uint2 feature; ValNodePtr num_type_features; ValNodePtr num_features; ValNodePtr length; Uint2 strandedness; } SequenceConstraint, PNTR SequenceConstraintPtr; NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintFree PROTO ((SequenceConstraintPtr )); NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintNew PROTO (( void )); NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SequenceConstraintAsnWrite PROTO (( SequenceConstraintPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Match_type_constraint_dont_care 0 #define Match_type_constraint_yes 1 #define Match_type_constraint_no 2 /************************************************** * * TranslationConstraint * **************************************************/ typedef struct struct_Translation_constraint { struct struct_String_constraint PNTR actual_strings; struct struct_String_constraint PNTR transl_strings; Uint2 internal_stops; ValNodePtr num_mismatches; } TranslationConstraint, PNTR TranslationConstraintPtr; NLM_EXTERN TranslationConstraintPtr LIBCALL TranslationConstraintFree PROTO ((TranslationConstraintPtr )); NLM_EXTERN TranslationConstraintPtr LIBCALL TranslationConstraintNew PROTO (( void )); NLM_EXTERN TranslationConstraintPtr LIBCALL TranslationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL TranslationConstraintAsnWrite PROTO (( TranslationConstraintPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ConstraintChoicePtr; typedef ValNode ConstraintChoice; #define ConstraintChoice_string 1 #define ConstraintChoice_location 2 #define ConstraintChoice_field 3 #define ConstraintChoice_source 4 #define ConstraintChoice_cdsgeneprot_qual 5 #define ConstraintChoice_cdsgeneprot_pseudo 6 #define ConstraintChoice_sequence 7 #define ConstraintChoice_pub 8 #define ConstraintChoice_molinfo 9 #define ConstraintChoice_field_missing 10 #define ConstraintChoice_translation 11 NLM_EXTERN ConstraintChoicePtr LIBCALL ConstraintChoiceFree PROTO ((ConstraintChoicePtr )); NLM_EXTERN ConstraintChoicePtr LIBCALL ConstraintChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ConstraintChoiceAsnWrite PROTO (( ConstraintChoicePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ConstraintChoiceSet * **************************************************/ typedef ValNode ConstraintChoiceSet; typedef ValNodePtr ConstraintChoiceSetPtr; #define ConstraintChoiceSetNew() ValNodeNew(NULL) #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetFree PROTO ((ConstraintChoiceSetPtr )); NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetNew PROTO (( void )); NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ConstraintChoiceSetAsnWrite PROTO (( ConstraintChoiceSetPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ typedef ValNodePtr TextMarkerPtr; typedef ValNode TextMarker; #define TextMarker_free_text 1 #define TextMarker_digits 2 #define TextMarker_letters 3 NLM_EXTERN TextMarkerPtr LIBCALL TextMarkerFree PROTO ((TextMarkerPtr )); NLM_EXTERN TextMarkerPtr LIBCALL TextMarkerAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL TextMarkerAsnWrite PROTO (( TextMarkerPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * TextPortion * **************************************************/ typedef struct struct_Text_portion { ValNodePtr left_marker; Uint1 include_left; ValNodePtr right_marker; Uint1 include_right; Uint1 inside; Uint1 case_sensitive; Uint1 whole_word; } TextPortion, PNTR TextPortionPtr; NLM_EXTERN TextPortionPtr LIBCALL TextPortionFree PROTO ((TextPortionPtr )); NLM_EXTERN TextPortionPtr LIBCALL TextPortionNew PROTO (( void )); NLM_EXTERN TextPortionPtr LIBCALL TextPortionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL TextPortionAsnWrite PROTO (( TextPortionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Field_edit_location_anywhere 0 #define Field_edit_location_beginning 1 #define Field_edit_location_end 2 /************************************************** * * FieldEdit * **************************************************/ typedef struct struct_Field_edit { CharPtr find_txt; CharPtr repl_txt; Uint2 location; Uint1 case_insensitive; } FieldEdit, PNTR FieldEditPtr; NLM_EXTERN FieldEditPtr LIBCALL FieldEditFree PROTO ((FieldEditPtr )); NLM_EXTERN FieldEditPtr LIBCALL FieldEditNew PROTO (( void )); NLM_EXTERN FieldEditPtr LIBCALL FieldEditAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FieldEditAsnWrite PROTO (( FieldEditPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr FieldPairTypePtr; typedef ValNode FieldPairType; #define FieldPairType_source_qual 1 #define FieldPairType_feature_field 2 #define FieldPairType_rna_field 3 #define FieldPairType_cds_gene_prot 4 #define FieldPairType_molinfo_field 5 #define FieldPairType_struc_comment_field 6 #define FieldPairType_dblink 7 NLM_EXTERN FieldPairTypePtr LIBCALL FieldPairTypeFree PROTO ((FieldPairTypePtr )); NLM_EXTERN FieldPairTypePtr LIBCALL FieldPairTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FieldPairTypeAsnWrite PROTO (( FieldPairTypePtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define ExistingTextOption_replace_old 1 #define ExistingTextOption_append_semi 2 #define ExistingTextOption_append_space 3 #define ExistingTextOption_append_colon 4 #define ExistingTextOption_append_comma 5 #define ExistingTextOption_append_none 6 #define ExistingTextOption_prefix_semi 7 #define ExistingTextOption_prefix_space 8 #define ExistingTextOption_prefix_colon 9 #define ExistingTextOption_prefix_comma 10 #define ExistingTextOption_prefix_none 11 #define ExistingTextOption_leave_old 12 #define ExistingTextOption_add_qual 13 /************************************************** * * ApplyAction * **************************************************/ typedef struct struct_Apply_action { ValNodePtr field; CharPtr value; Uint2 existing_text; } ApplyAction, PNTR ApplyActionPtr; NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionFree PROTO ((ApplyActionPtr )); NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionNew PROTO (( void )); NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ApplyActionAsnWrite PROTO (( ApplyActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * EditAction * **************************************************/ typedef struct struct_Edit_action { struct struct_Field_edit PNTR edit; ValNodePtr field; } EditAction, PNTR EditActionPtr; NLM_EXTERN EditActionPtr LIBCALL EditActionFree PROTO ((EditActionPtr )); NLM_EXTERN EditActionPtr LIBCALL EditActionNew PROTO (( void )); NLM_EXTERN EditActionPtr LIBCALL EditActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL EditActionAsnWrite PROTO (( EditActionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Cap_change_none 0 #define Cap_change_tolower 1 #define Cap_change_toupper 2 #define Cap_change_firstcap 3 #define Cap_change_firstcaprestnochange 4 #define Cap_change_firstlower_restnochange 5 #define Cap_change_cap_word_space 6 #define Cap_change_cap_word_space_punc 7 typedef ValNodePtr TextTransformPtr; typedef ValNode TextTransform; #define TextTransform_edit 1 #define TextTransform_caps 2 #define TextTransform_remove 3 NLM_EXTERN TextTransformPtr LIBCALL TextTransformFree PROTO ((TextTransformPtr )); NLM_EXTERN TextTransformPtr LIBCALL TextTransformAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL TextTransformAsnWrite PROTO (( TextTransformPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * TextTransformSet * **************************************************/ typedef ValNode TextTransformSet; typedef ValNodePtr TextTransformSetPtr; #define TextTransformSetNew() ValNodeNew(NULL) #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN TextTransformSetPtr LIBCALL TextTransformSetFree PROTO ((TextTransformSetPtr )); NLM_EXTERN TextTransformSetPtr LIBCALL TextTransformSetNew PROTO (( void )); NLM_EXTERN TextTransformSetPtr LIBCALL TextTransformSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL TextTransformSetAsnWrite PROTO (( TextTransformSetPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ /************************************************** * * ConvertAction * **************************************************/ typedef struct struct_Convert_action { ValNodePtr fields; Uint1 strip_name; Uint1 keep_original; Uint2 capitalization; Uint2 existing_text; } ConvertAction, PNTR ConvertActionPtr; NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionFree PROTO ((ConvertActionPtr )); NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionNew PROTO (( void )); NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ConvertActionAsnWrite PROTO (( ConvertActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * CopyAction * **************************************************/ typedef struct struct_Copy_action { ValNodePtr fields; Uint2 existing_text; } CopyAction, PNTR CopyActionPtr; NLM_EXTERN CopyActionPtr LIBCALL CopyActionFree PROTO ((CopyActionPtr )); NLM_EXTERN CopyActionPtr LIBCALL CopyActionNew PROTO (( void )); NLM_EXTERN CopyActionPtr LIBCALL CopyActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL CopyActionAsnWrite PROTO (( CopyActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * SwapAction * **************************************************/ typedef struct struct_Swap_action { ValNodePtr fields; ValNodePtr field_to; } SwapAction, PNTR SwapActionPtr; NLM_EXTERN SwapActionPtr LIBCALL SwapActionFree PROTO ((SwapActionPtr )); NLM_EXTERN SwapActionPtr LIBCALL SwapActionNew PROTO (( void )); NLM_EXTERN SwapActionPtr LIBCALL SwapActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SwapActionAsnWrite PROTO (( SwapActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * AECRParseAction * **************************************************/ typedef struct struct_AECRParse_action { struct struct_Text_portion PNTR portion; ValNodePtr fields; Uint1 remove_from_parsed; Uint1 remove_left; Uint1 remove_right; ValNodePtr transform; Uint2 existing_text; } AECRParseAction, PNTR AECRParseActionPtr; NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionFree PROTO ((AECRParseActionPtr )); NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionNew PROTO (( void )); NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL AECRParseActionAsnWrite PROTO (( AECRParseActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * RemoveAction * **************************************************/ typedef struct struct_Remove_action { ValNodePtr field; } RemoveAction, PNTR RemoveActionPtr; NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionFree PROTO ((RemoveActionPtr )); NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionNew PROTO (( void )); NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RemoveActionAsnWrite PROTO (( RemoveActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * RemoveOutsideAction * **************************************************/ typedef struct struct_Remove_outside_action { struct struct_Text_portion PNTR portion; ValNodePtr field; Uint1 remove_if_not_found; } RemoveOutsideAction, PNTR RemoveOutsideActionPtr; NLM_EXTERN RemoveOutsideActionPtr LIBCALL RemoveOutsideActionFree PROTO ((RemoveOutsideActionPtr )); NLM_EXTERN RemoveOutsideActionPtr LIBCALL RemoveOutsideActionNew PROTO (( void )); NLM_EXTERN RemoveOutsideActionPtr LIBCALL RemoveOutsideActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RemoveOutsideActionAsnWrite PROTO (( RemoveOutsideActionPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ActionChoicePtr; typedef ValNode ActionChoice; #define ActionChoice_apply 1 #define ActionChoice_edit 2 #define ActionChoice_convert 3 #define ActionChoice_copy 4 #define ActionChoice_swap 5 #define ActionChoice_remove 6 #define ActionChoice_parse 7 #define ActionChoice_remove_outside 8 NLM_EXTERN ActionChoicePtr LIBCALL ActionChoiceFree PROTO ((ActionChoicePtr )); NLM_EXTERN ActionChoicePtr LIBCALL ActionChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ActionChoiceAsnWrite PROTO (( ActionChoicePtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ParseSrcOrgChoicePtr; typedef ValNode ParseSrcOrgChoice; #define ParseSrcOrgChoice_source_qual 1 #define ParseSrcOrgChoice_taxname_after_binomial 2 NLM_EXTERN ParseSrcOrgChoicePtr LIBCALL ParseSrcOrgChoiceFree PROTO ((ParseSrcOrgChoicePtr )); NLM_EXTERN ParseSrcOrgChoicePtr LIBCALL ParseSrcOrgChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ParseSrcOrgChoiceAsnWrite PROTO (( ParseSrcOrgChoicePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ParseSrcOrg * **************************************************/ typedef struct struct_Parse_src_org { ValNodePtr field; Uint2 type; } ParseSrcOrg, PNTR ParseSrcOrgPtr; NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgFree PROTO ((ParseSrcOrgPtr )); NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgNew PROTO (( void )); NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ParseSrcOrgAsnWrite PROTO (( ParseSrcOrgPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ParseSrcGeneralIdPtr; typedef ValNode ParseSrcGeneralId; #define ParseSrcGeneralId_whole_text 1 #define ParseSrcGeneralId_db 2 #define ParseSrcGeneralId_tag 3 NLM_EXTERN ParseSrcGeneralIdPtr LIBCALL ParseSrcGeneralIdFree PROTO ((ParseSrcGeneralIdPtr )); NLM_EXTERN ParseSrcGeneralIdPtr LIBCALL ParseSrcGeneralIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ParseSrcGeneralIdAsnWrite PROTO (( ParseSrcGeneralIdPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ParseSrcPtr; typedef ValNode ParseSrc; #define ParseSrc_defline 1 #define ParseSrc_flatfile 2 #define ParseSrc_local_id 3 #define ParseSrc_org 4 #define ParseSrc_comment 5 #define ParseSrc_bankit_comment 6 #define ParseSrc_structured_comment 7 #define ParseSrc_file_id 8 #define ParseSrc_general_id 9 NLM_EXTERN ParseSrcPtr LIBCALL ParseSrcFree PROTO ((ParseSrcPtr )); NLM_EXTERN ParseSrcPtr LIBCALL ParseSrcAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ParseSrcAsnWrite PROTO (( ParseSrcPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ParseDstOrg * **************************************************/ typedef struct struct_Parse_dst_org { ValNodePtr field; Uint2 type; } ParseDstOrg, PNTR ParseDstOrgPtr; NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgFree PROTO ((ParseDstOrgPtr )); NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgNew PROTO (( void )); NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ParseDstOrgAsnWrite PROTO (( ParseDstOrgPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ParseDestPtr; typedef ValNode ParseDest; #define ParseDest_defline 1 #define ParseDest_org 2 #define ParseDest_featqual 3 #define ParseDest_comment_descriptor 4 #define ParseDest_dbxref 5 NLM_EXTERN ParseDestPtr LIBCALL ParseDestFree PROTO ((ParseDestPtr )); NLM_EXTERN ParseDestPtr LIBCALL ParseDestAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ParseDestAsnWrite PROTO (( ParseDestPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * LocationInterval * **************************************************/ typedef struct struct_Location_interval { Int4 from; Int4 to; } LocationInterval, PNTR LocationIntervalPtr; NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalFree PROTO ((LocationIntervalPtr )); NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalNew PROTO (( void )); NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL LocationIntervalAsnWrite PROTO (( LocationIntervalPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr LocationChoicePtr; typedef ValNode LocationChoice; #define LocationChoice_interval 1 #define LocationChoice_whole_sequence 2 #define LocationChoice_point 3 NLM_EXTERN LocationChoicePtr LIBCALL LocationChoiceFree PROTO ((LocationChoicePtr )); NLM_EXTERN LocationChoicePtr LIBCALL LocationChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL LocationChoiceAsnWrite PROTO (( LocationChoicePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * SequenceList * **************************************************/ typedef ValNode SequenceList; typedef ValNodePtr SequenceListPtr; #define SequenceListNew() ValNodeNew(NULL) #ifdef NLM_GENERATED_CODE_PROTO NLM_EXTERN SequenceListPtr LIBCALL SequenceListFree PROTO ((SequenceListPtr )); NLM_EXTERN SequenceListPtr LIBCALL SequenceListNew PROTO (( void )); NLM_EXTERN SequenceListPtr LIBCALL SequenceListAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SequenceListAsnWrite PROTO (( SequenceListPtr , AsnIoPtr, AsnTypePtr)); #endif /* NLM_GENERATED_CODE_PROTO */ typedef ValNodePtr SequenceListChoicePtr; typedef ValNode SequenceListChoice; #define SequenceListChoice_list 1 #define SequenceListChoice_all 2 NLM_EXTERN SequenceListChoicePtr LIBCALL SequenceListChoiceFree PROTO ((SequenceListChoicePtr )); NLM_EXTERN SequenceListChoicePtr LIBCALL SequenceListChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SequenceListChoiceAsnWrite PROTO (( SequenceListChoicePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ApplyFeatureAction * **************************************************/ typedef struct struct_Apply_feature_action { Uint2 type; Uint1 partial5; Uint1 partial3; Uint1 plus_strand; ValNodePtr location; ValNodePtr seq_list; Uint1 add_redundant; Uint1 add_mrna; Uint1 apply_to_parts; Int4 only_seg_num; ValNodePtr fields; ValNodePtr src_fields; } ApplyFeatureAction, PNTR ApplyFeatureActionPtr; NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionFree PROTO ((ApplyFeatureActionPtr )); NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionNew PROTO (( void )); NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ApplyFeatureActionAsnWrite PROTO (( ApplyFeatureActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * RemoveFeatureAction * **************************************************/ typedef struct struct_Remove_feature_action { Uint2 type; ValNodePtr constraint; } RemoveFeatureAction, PNTR RemoveFeatureActionPtr; NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionFree PROTO ((RemoveFeatureActionPtr )); NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionNew PROTO (( void )); NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RemoveFeatureActionAsnWrite PROTO (( RemoveFeatureActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ConvertFromCDSOptions * **************************************************/ typedef struct struct_Convert_from_CDS_options { Uint1 remove_mRNA; Uint1 remove_gene; Uint1 remove_transcript_id; } ConvertFromCDSOptions, PNTR ConvertFromCDSOptionsPtr; NLM_EXTERN ConvertFromCDSOptionsPtr LIBCALL ConvertFromCDSOptionsFree PROTO ((ConvertFromCDSOptionsPtr )); NLM_EXTERN ConvertFromCDSOptionsPtr LIBCALL ConvertFromCDSOptionsNew PROTO (( void )); NLM_EXTERN ConvertFromCDSOptionsPtr LIBCALL ConvertFromCDSOptionsAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ConvertFromCDSOptionsAsnWrite PROTO (( ConvertFromCDSOptionsPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ConvertFeatureSrcOptionsPtr; typedef ValNode ConvertFeatureSrcOptions; #define ConvertFeatureSrcOptions_cds 1 NLM_EXTERN ConvertFeatureSrcOptionsPtr LIBCALL ConvertFeatureSrcOptionsFree PROTO ((ConvertFeatureSrcOptionsPtr )); NLM_EXTERN ConvertFeatureSrcOptionsPtr LIBCALL ConvertFeatureSrcOptionsAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ConvertFeatureSrcOptionsAsnWrite PROTO (( ConvertFeatureSrcOptionsPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Bond_type_disulfide 1 #define Bond_type_thioester 2 #define Bond_type_crosslink 3 #define Bond_type_thioether 4 #define Bond_type_other 5 /* following #defines are for enumerated type, not used by object loaders */ #define Site_type_active 1 #define Site_type_binding 2 #define Site_type_cleavage 3 #define Site_type_inhibit 4 #define Site_type_modified 5 #define Site_type_glycosylation 6 #define Site_type_myristoylation 7 #define Site_type_mutagenized 8 #define Site_type_metal_binding 9 #define Site_type_phosphorylation 10 #define Site_type_acetylation 11 #define Site_type_amidation 12 #define Site_type_methylation 13 #define Site_type_hydroxylation 14 #define Site_type_sulfatation 15 #define Site_type_oxidative_deamination 16 #define Site_type_pyrrolidone_carboxylic_acid 17 #define Site_type_gamma_carboxyglutamic_acid 18 #define Site_type_blocked 19 #define Site_type_lipid_binding 20 #define Site_type_np_binding 21 #define Site_type_dna_binding 22 #define Site_type_signal_peptide 23 #define Site_type_transit_peptide 24 #define Site_type_transmembrane_region 25 #define Site_type_nitrosylation 26 #define Site_type_other 27 /************************************************** * * RegionType * **************************************************/ typedef struct struct_Region_type { Uint1 create_nucleotide; } RegionType, PNTR RegionTypePtr; NLM_EXTERN RegionTypePtr LIBCALL RegionTypeFree PROTO ((RegionTypePtr )); NLM_EXTERN RegionTypePtr LIBCALL RegionTypeNew PROTO (( void )); NLM_EXTERN RegionTypePtr LIBCALL RegionTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RegionTypeAsnWrite PROTO (( RegionTypePtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ConvertFeatureDstOptionsPtr; typedef ValNode ConvertFeatureDstOptions; #define ConvertFeatureDstOptions_bond 1 #define ConvertFeatureDstOptions_site 2 #define ConvertFeatureDstOptions_region 3 #define ConvertFeatureDstOptions_ncrna_class 4 #define ConvertFeatureDstOptions_remove_original 5 NLM_EXTERN ConvertFeatureDstOptionsPtr LIBCALL ConvertFeatureDstOptionsFree PROTO ((ConvertFeatureDstOptionsPtr )); NLM_EXTERN ConvertFeatureDstOptionsPtr LIBCALL ConvertFeatureDstOptionsAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ConvertFeatureDstOptionsAsnWrite PROTO (( ConvertFeatureDstOptionsPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ConvertFeatureAction * **************************************************/ typedef struct struct_Convert_feature_action { Uint2 type_from; Uint2 type_to; ValNodePtr src_options; ValNodePtr dst_options; Uint1 leave_original; ValNodePtr src_feat_constraint; } ConvertFeatureAction, PNTR ConvertFeatureActionPtr; NLM_EXTERN ConvertFeatureActionPtr LIBCALL ConvertFeatureActionFree PROTO ((ConvertFeatureActionPtr )); NLM_EXTERN ConvertFeatureActionPtr LIBCALL ConvertFeatureActionNew PROTO (( void )); NLM_EXTERN ConvertFeatureActionPtr LIBCALL ConvertFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ConvertFeatureActionAsnWrite PROTO (( ConvertFeatureActionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Feature_location_strand_from_any 0 #define Feature_location_strand_from_plus 1 #define Feature_location_strand_from_minus 2 #define Feature_location_strand_from_unknown 3 #define Feature_location_strand_from_both 4 /* following #defines are for enumerated type, not used by object loaders */ #define Feature_location_strand_to_plus 1 #define Feature_location_strand_to_minus 2 #define Feature_location_strand_to_unknown 3 #define Feature_location_strand_to_both 4 #define Feature_location_strand_to_reverse 5 /************************************************** * * EditLocationStrand * **************************************************/ typedef struct struct_Edit_location_strand { Uint2 strand_from; Uint2 strand_to; } EditLocationStrand, PNTR EditLocationStrandPtr; NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandFree PROTO ((EditLocationStrandPtr )); NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandNew PROTO (( void )); NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL EditLocationStrandAsnWrite PROTO (( EditLocationStrandPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Partial_5_set_constraint_all 0 #define Partial_5_set_constraint_at_end 1 #define Partial_5_set_constraint_bad_start 2 #define Partial_5_set_constraint_frame_not_one 3 /************************************************** * * Partial5SetAction * **************************************************/ typedef struct struct_Partial_5_set_action { Uint2 constraint; Uint1 extend; } Partial5SetAction, PNTR Partial5SetActionPtr; NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionFree PROTO ((Partial5SetActionPtr )); NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionNew PROTO (( void )); NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL Partial5SetActionAsnWrite PROTO (( Partial5SetActionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Partial_5_clear_constraint_all 0 #define Partial_5_clear_constraint_not_at_end 1 #define Partial_5_clear_constraint_good_start 2 /* following #defines are for enumerated type, not used by object loaders */ #define Partial_3_set_constraint_all 0 #define Partial_3_set_constraint_at_end 1 #define Partial_3_set_constraint_bad_end 2 /************************************************** * * Partial3SetAction * **************************************************/ typedef struct struct_Partial_3_set_action { Uint2 constraint; Uint1 extend; } Partial3SetAction, PNTR Partial3SetActionPtr; NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionFree PROTO ((Partial3SetActionPtr )); NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionNew PROTO (( void )); NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL Partial3SetActionAsnWrite PROTO (( Partial3SetActionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Partial_3_clear_constraint_all 0 #define Partial_3_clear_constraint_not_at_end 1 #define Partial_3_clear_constraint_good_end 2 /* following #defines are for enumerated type, not used by object loaders */ #define Partial_both_set_constraint_all 0 #define Partial_both_set_constraint_at_end 1 /************************************************** * * PartialBothSetAction * **************************************************/ typedef struct struct_Partial_both_set_action { Uint2 constraint; Uint1 extend; } PartialBothSetAction, PNTR PartialBothSetActionPtr; NLM_EXTERN PartialBothSetActionPtr LIBCALL PartialBothSetActionFree PROTO ((PartialBothSetActionPtr )); NLM_EXTERN PartialBothSetActionPtr LIBCALL PartialBothSetActionNew PROTO (( void )); NLM_EXTERN PartialBothSetActionPtr LIBCALL PartialBothSetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL PartialBothSetActionAsnWrite PROTO (( PartialBothSetActionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Partial_both_clear_constraint_all 0 #define Partial_both_clear_constraint_not_at_end 1 /* following #defines are for enumerated type, not used by object loaders */ #define Convert_location_type_join 1 #define Convert_location_type_order 2 #define Convert_location_type_merge 3 /************************************************** * * ExtendToFeature * **************************************************/ typedef struct struct_Extend_to_feature { Uint2 type; Uint1 include_feat; ValNodePtr distance; } ExtendToFeature, PNTR ExtendToFeaturePtr; NLM_EXTERN ExtendToFeaturePtr LIBCALL ExtendToFeatureFree PROTO ((ExtendToFeaturePtr )); NLM_EXTERN ExtendToFeaturePtr LIBCALL ExtendToFeatureNew PROTO (( void )); NLM_EXTERN ExtendToFeaturePtr LIBCALL ExtendToFeatureAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ExtendToFeatureAsnWrite PROTO (( ExtendToFeaturePtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr LocationEditTypePtr; typedef ValNode LocationEditType; #define LocationEditType_strand 1 #define LocationEditType_set_5_partial 2 #define LocationEditType_clear_5_partial 3 #define LocationEditType_set_3_partial 4 #define LocationEditType_clear_3_partial 5 #define LocationEditType_set_both_partial 6 #define LocationEditType_clear_both_partial 7 #define LocationEditType_convert 8 #define LocationEditType_extend_5 9 #define LocationEditType_extend_3 10 #define LocationEditType_extend_5_to_feat 11 #define LocationEditType_extend_3_to_feat 12 NLM_EXTERN LocationEditTypePtr LIBCALL LocationEditTypeFree PROTO ((LocationEditTypePtr )); NLM_EXTERN LocationEditTypePtr LIBCALL LocationEditTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL LocationEditTypeAsnWrite PROTO (( LocationEditTypePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * EditFeatureLocationAction * **************************************************/ typedef struct struct_Edit_feature_location_action { Uint2 type; ValNodePtr action; Uint1 retranslate_cds; Uint1 also_edit_gene; ValNodePtr constraint; } EditFeatureLocationAction, PNTR EditFeatureLocationActionPtr; NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionFree PROTO ((EditFeatureLocationActionPtr )); NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionNew PROTO (( void )); NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL EditFeatureLocationActionAsnWrite PROTO (( EditFeatureLocationActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MolinfoBlock * **************************************************/ typedef struct struct_Molinfo_block { ValNodePtr to_list; ValNodePtr from_list; ValNodePtr constraint; } MolinfoBlock, PNTR MolinfoBlockPtr; NLM_EXTERN MolinfoBlockPtr LIBCALL MolinfoBlockFree PROTO ((MolinfoBlockPtr )); NLM_EXTERN MolinfoBlockPtr LIBCALL MolinfoBlockNew PROTO (( void )); NLM_EXTERN MolinfoBlockPtr LIBCALL MolinfoBlockAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MolinfoBlockAsnWrite PROTO (( MolinfoBlockPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Descriptor_type_all 0 #define Descriptor_type_title 1 #define Descriptor_type_source 2 #define Descriptor_type_publication 3 #define Descriptor_type_comment 4 #define Descriptor_type_genbank 5 #define Descriptor_type_user 6 #define Descriptor_type_create_date 7 #define Descriptor_type_update_date 8 #define Descriptor_type_mol_info 9 #define Descriptor_type_structured_comment 10 #define Descriptor_type_genome_project_id 11 /************************************************** * * RemoveDescriptorAction * **************************************************/ typedef struct struct_Remove_descriptor_action { Uint2 type; ValNodePtr constraint; } RemoveDescriptorAction, PNTR RemoveDescriptorActionPtr; NLM_EXTERN RemoveDescriptorActionPtr LIBCALL RemoveDescriptorActionFree PROTO ((RemoveDescriptorActionPtr )); NLM_EXTERN RemoveDescriptorActionPtr LIBCALL RemoveDescriptorActionNew PROTO (( void )); NLM_EXTERN RemoveDescriptorActionPtr LIBCALL RemoveDescriptorActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RemoveDescriptorActionAsnWrite PROTO (( RemoveDescriptorActionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Autodef_list_type_feature_list 1 #define Autodef_list_type_complete_sequence 2 #define Autodef_list_type_complete_genome 3 #define Autodef_list_type_sequence 4 /* following #defines are for enumerated type, not used by object loaders */ #define Autodef_misc_feat_parse_rule_use_comment_before_first_semicolon 1 #define Autodef_misc_feat_parse_rule_look_for_noncoding_products 2 /************************************************** * * AutodefAction * **************************************************/ typedef struct struct_Autodef_action { ValNodePtr modifiers; Uint2 clause_list_type; Uint2 misc_feat_parse_rule; } AutodefAction, PNTR AutodefActionPtr; NLM_EXTERN AutodefActionPtr LIBCALL AutodefActionFree PROTO ((AutodefActionPtr )); NLM_EXTERN AutodefActionPtr LIBCALL AutodefActionNew PROTO (( void )); NLM_EXTERN AutodefActionPtr LIBCALL AutodefActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL AutodefActionAsnWrite PROTO (( AutodefActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * FixPubCapsAction * **************************************************/ typedef struct struct_Fix_pub_caps_action { Uint1 title; Uint1 authors; Uint1 affiliation; Uint1 affil_country; Uint1 punct_only; ValNodePtr constraint; } FixPubCapsAction, PNTR FixPubCapsActionPtr; NLM_EXTERN FixPubCapsActionPtr LIBCALL FixPubCapsActionFree PROTO ((FixPubCapsActionPtr )); NLM_EXTERN FixPubCapsActionPtr LIBCALL FixPubCapsActionNew PROTO (( void )); NLM_EXTERN FixPubCapsActionPtr LIBCALL FixPubCapsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FixPubCapsActionAsnWrite PROTO (( FixPubCapsActionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Sort_order_short_to_long 1 #define Sort_order_long_to_short 2 #define Sort_order_alphabetical 3 /************************************************** * * SortFieldsAction * **************************************************/ typedef struct struct_Sort_fields_action { ValNodePtr field; Uint2 order; ValNodePtr constraint; } SortFieldsAction, PNTR SortFieldsActionPtr; NLM_EXTERN SortFieldsActionPtr LIBCALL SortFieldsActionFree PROTO ((SortFieldsActionPtr )); NLM_EXTERN SortFieldsActionPtr LIBCALL SortFieldsActionNew PROTO (( void )); NLM_EXTERN SortFieldsActionPtr LIBCALL SortFieldsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SortFieldsActionAsnWrite PROTO (( SortFieldsActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * FixAuthorCaps * **************************************************/ typedef struct struct_Fix_author_caps { Uint1 last_name_only; } FixAuthorCaps, PNTR FixAuthorCapsPtr; NLM_EXTERN FixAuthorCapsPtr LIBCALL FixAuthorCapsFree PROTO ((FixAuthorCapsPtr )); NLM_EXTERN FixAuthorCapsPtr LIBCALL FixAuthorCapsNew PROTO (( void )); NLM_EXTERN FixAuthorCapsPtr LIBCALL FixAuthorCapsAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FixAuthorCapsAsnWrite PROTO (( FixAuthorCapsPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr FixCapsActionPtr; typedef ValNode FixCapsAction; #define FixCapsAction_pub 1 #define FixCapsAction_src_country 2 #define FixCapsAction_mouse_strain 3 #define FixCapsAction_src_qual 4 #define FixCapsAction_author 5 NLM_EXTERN FixCapsActionPtr LIBCALL FixCapsActionFree PROTO ((FixCapsActionPtr )); NLM_EXTERN FixCapsActionPtr LIBCALL FixCapsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FixCapsActionAsnWrite PROTO (( FixCapsActionPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr FixFormatActionPtr; typedef ValNode FixFormatAction; #define FixFormatAction_collection_date 1 #define FixFormatAction_lat_lon 2 #define FixFormatAction_primers 3 #define FixFormatAction_protein_name 4 NLM_EXTERN FixFormatActionPtr LIBCALL FixFormatActionFree PROTO ((FixFormatActionPtr )); NLM_EXTERN FixFormatActionPtr LIBCALL FixFormatActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FixFormatActionAsnWrite PROTO (( FixFormatActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * RemoveDuplicateFeatureAction * **************************************************/ typedef struct struct_Remove_duplicate_feature_action { Uint2 type; Uint1 ignore_partials; Uint1 case_sensitive; Uint1 remove_proteins; ValNodePtr rd_constraint; } RemoveDuplicateFeatureAction, PNTR RemoveDuplicateFeatureActionPtr; NLM_EXTERN RemoveDuplicateFeatureActionPtr LIBCALL RemoveDuplicateFeatureActionFree PROTO ((RemoveDuplicateFeatureActionPtr )); NLM_EXTERN RemoveDuplicateFeatureActionPtr LIBCALL RemoveDuplicateFeatureActionNew PROTO (( void )); NLM_EXTERN RemoveDuplicateFeatureActionPtr LIBCALL RemoveDuplicateFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RemoveDuplicateFeatureActionAsnWrite PROTO (( RemoveDuplicateFeatureActionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Gene_xref_suppression_type_any 0 #define Gene_xref_suppression_type_suppressing 1 #define Gene_xref_suppression_type_non_suppressing 2 /* following #defines are for enumerated type, not used by object loaders */ #define Gene_xref_necessary_type_any 0 #define Gene_xref_necessary_type_necessary 1 #define Gene_xref_necessary_type_unnecessary 2 /************************************************** * * GeneXrefType * **************************************************/ typedef struct struct_Gene_xref_type { Uint2 feature; Uint2 suppression; Uint2 necessary; } GeneXrefType, PNTR GeneXrefTypePtr; NLM_EXTERN GeneXrefTypePtr LIBCALL GeneXrefTypeFree PROTO ((GeneXrefTypePtr )); NLM_EXTERN GeneXrefTypePtr LIBCALL GeneXrefTypeNew PROTO (( void )); NLM_EXTERN GeneXrefTypePtr LIBCALL GeneXrefTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL GeneXrefTypeAsnWrite PROTO (( GeneXrefTypePtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr XrefTypePtr; typedef ValNode XrefType; #define XrefType_gene 1 NLM_EXTERN XrefTypePtr LIBCALL XrefTypeFree PROTO ((XrefTypePtr )); NLM_EXTERN XrefTypePtr LIBCALL XrefTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL XrefTypeAsnWrite PROTO (( XrefTypePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * RemoveXrefsAction * **************************************************/ typedef struct struct_Remove_xrefs_action { ValNodePtr xref_type; ValNodePtr constraint; } RemoveXrefsAction, PNTR RemoveXrefsActionPtr; NLM_EXTERN RemoveXrefsActionPtr LIBCALL RemoveXrefsActionFree PROTO ((RemoveXrefsActionPtr )); NLM_EXTERN RemoveXrefsActionPtr LIBCALL RemoveXrefsActionNew PROTO (( void )); NLM_EXTERN RemoveXrefsActionPtr LIBCALL RemoveXrefsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RemoveXrefsActionAsnWrite PROTO (( RemoveXrefsActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * MakeGeneXrefAction * **************************************************/ typedef struct struct_Make_gene_xref_action { Uint2 feature; ValNodePtr constraint; } MakeGeneXrefAction, PNTR MakeGeneXrefActionPtr; NLM_EXTERN MakeGeneXrefActionPtr LIBCALL MakeGeneXrefActionFree PROTO ((MakeGeneXrefActionPtr )); NLM_EXTERN MakeGeneXrefActionPtr LIBCALL MakeGeneXrefActionNew PROTO (( void )); NLM_EXTERN MakeGeneXrefActionPtr LIBCALL MakeGeneXrefActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MakeGeneXrefActionAsnWrite PROTO (( MakeGeneXrefActionPtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Author_fix_type_truncate_middle_initials 1 #define Author_fix_type_strip_suffix 2 #define Author_fix_type_move_middle_to_first 3 /************************************************** * * AuthorFixAction * **************************************************/ typedef struct struct_Author_fix_action { Uint2 fix_type; ValNodePtr constraint; } AuthorFixAction, PNTR AuthorFixActionPtr; NLM_EXTERN AuthorFixActionPtr LIBCALL AuthorFixActionFree PROTO ((AuthorFixActionPtr )); NLM_EXTERN AuthorFixActionPtr LIBCALL AuthorFixActionNew PROTO (( void )); NLM_EXTERN AuthorFixActionPtr LIBCALL AuthorFixActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL AuthorFixActionAsnWrite PROTO (( AuthorFixActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * UpdateSequencesAction * **************************************************/ typedef struct struct_Update_sequences_action { CharPtr filename; Uint1 add_cit_subs; } UpdateSequencesAction, PNTR UpdateSequencesActionPtr; NLM_EXTERN UpdateSequencesActionPtr LIBCALL UpdateSequencesActionFree PROTO ((UpdateSequencesActionPtr )); NLM_EXTERN UpdateSequencesActionPtr LIBCALL UpdateSequencesActionNew PROTO (( void )); NLM_EXTERN UpdateSequencesActionPtr LIBCALL UpdateSequencesActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL UpdateSequencesActionAsnWrite PROTO (( UpdateSequencesActionPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr CreateTSAIdsSrcPtr; typedef ValNode CreateTSAIdsSrc; #define CreateTSAIdsSrc_local_id 1 #define CreateTSAIdsSrc_defline 2 NLM_EXTERN CreateTSAIdsSrcPtr LIBCALL CreateTSAIdsSrcFree PROTO ((CreateTSAIdsSrcPtr )); NLM_EXTERN CreateTSAIdsSrcPtr LIBCALL CreateTSAIdsSrcAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL CreateTSAIdsSrcAsnWrite PROTO (( CreateTSAIdsSrcPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * CreateTSAIdsAction * **************************************************/ typedef struct struct_Create_TSA_ids_action { ValNodePtr src; CharPtr suffix; struct struct_Text_portion PNTR id_text_portion; } CreateTSAIdsAction, PNTR CreateTSAIdsActionPtr; NLM_EXTERN CreateTSAIdsActionPtr LIBCALL CreateTSAIdsActionFree PROTO ((CreateTSAIdsActionPtr )); NLM_EXTERN CreateTSAIdsActionPtr LIBCALL CreateTSAIdsActionNew PROTO (( void )); NLM_EXTERN CreateTSAIdsActionPtr LIBCALL CreateTSAIdsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL CreateTSAIdsActionAsnWrite PROTO (( CreateTSAIdsActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * AutofixAction * **************************************************/ typedef struct struct_Autofix_action { CharPtr test_name; } AutofixAction, PNTR AutofixActionPtr; NLM_EXTERN AutofixActionPtr LIBCALL AutofixActionFree PROTO ((AutofixActionPtr )); NLM_EXTERN AutofixActionPtr LIBCALL AutofixActionNew PROTO (( void )); NLM_EXTERN AutofixActionPtr LIBCALL AutofixActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL AutofixActionAsnWrite PROTO (( AutofixActionPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr FixSetsActionPtr; typedef ValNode FixSetsAction; #define FixSetsAction_remove_single_item_set 1 #define FixSetsAction_renormalize_nuc_prot_sets 2 #define FixSetsAction_fix_pop_to_phy 3 NLM_EXTERN FixSetsActionPtr LIBCALL FixSetsActionFree PROTO ((FixSetsActionPtr )); NLM_EXTERN FixSetsActionPtr LIBCALL FixSetsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL FixSetsActionAsnWrite PROTO (( FixSetsActionPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr TableMatchTypePtr; typedef ValNode TableMatchType; #define TableMatchType_feature_id 1 #define TableMatchType_gene_locus_tag 2 #define TableMatchType_protein_id 3 #define TableMatchType_dbxref 4 #define TableMatchType_nuc_id 5 #define TableMatchType_src_qual 6 #define TableMatchType_protein_name 7 #define TableMatchType_any 8 NLM_EXTERN TableMatchTypePtr LIBCALL TableMatchTypeFree PROTO ((TableMatchTypePtr )); NLM_EXTERN TableMatchTypePtr LIBCALL TableMatchTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL TableMatchTypeAsnWrite PROTO (( TableMatchTypePtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * TableMatch * **************************************************/ typedef struct struct_Table_match { ValNodePtr match_type; Uint2 match_location; } TableMatch, PNTR TableMatchPtr; NLM_EXTERN TableMatchPtr LIBCALL TableMatchFree PROTO ((TableMatchPtr )); NLM_EXTERN TableMatchPtr LIBCALL TableMatchNew PROTO (( void )); NLM_EXTERN TableMatchPtr LIBCALL TableMatchAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL TableMatchAsnWrite PROTO (( TableMatchPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ApplyTableExtraDataPtr; typedef ValNode ApplyTableExtraData; #define ApplyTableExtraData_table 1 NLM_EXTERN ApplyTableExtraDataPtr LIBCALL ApplyTableExtraDataFree PROTO ((ApplyTableExtraDataPtr )); NLM_EXTERN ApplyTableExtraDataPtr LIBCALL ApplyTableExtraDataAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ApplyTableExtraDataAsnWrite PROTO (( ApplyTableExtraDataPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ApplyTableAction * **************************************************/ typedef struct struct_Apply_table_action { CharPtr filename; struct struct_Table_match PNTR match_type; ValNodePtr in_memory_table; } ApplyTableAction, PNTR ApplyTableActionPtr; NLM_EXTERN ApplyTableActionPtr LIBCALL ApplyTableActionFree PROTO ((ApplyTableActionPtr )); NLM_EXTERN ApplyTableActionPtr LIBCALL ApplyTableActionNew PROTO (( void )); NLM_EXTERN ApplyTableActionPtr LIBCALL ApplyTableActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ApplyTableActionAsnWrite PROTO (( ApplyTableActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * AddFileAction * **************************************************/ typedef struct struct_Add_file_action { CharPtr filename; ValNodePtr in_memory_table; } AddFileAction, PNTR AddFileActionPtr; NLM_EXTERN AddFileActionPtr LIBCALL AddFileActionFree PROTO ((AddFileActionPtr )); NLM_EXTERN AddFileActionPtr LIBCALL AddFileActionNew PROTO (( void )); NLM_EXTERN AddFileActionPtr LIBCALL AddFileActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL AddFileActionAsnWrite PROTO (( AddFileActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * AddDescriptorListAction * **************************************************/ typedef struct struct_Add_descriptor_list_action { struct struct_Add_file_action PNTR descriptor_list; ValNodePtr constraint; } AddDescriptorListAction, PNTR AddDescriptorListActionPtr; NLM_EXTERN AddDescriptorListActionPtr LIBCALL AddDescriptorListActionFree PROTO ((AddDescriptorListActionPtr )); NLM_EXTERN AddDescriptorListActionPtr LIBCALL AddDescriptorListActionNew PROTO (( void )); NLM_EXTERN AddDescriptorListActionPtr LIBCALL AddDescriptorListActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL AddDescriptorListActionAsnWrite PROTO (( AddDescriptorListActionPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * RemoveSequencesAction * **************************************************/ typedef struct struct_Remove_sequences_action { ValNodePtr constraint; } RemoveSequencesAction, PNTR RemoveSequencesActionPtr; NLM_EXTERN RemoveSequencesActionPtr LIBCALL RemoveSequencesActionFree PROTO ((RemoveSequencesActionPtr )); NLM_EXTERN RemoveSequencesActionPtr LIBCALL RemoveSequencesActionNew PROTO (( void )); NLM_EXTERN RemoveSequencesActionPtr LIBCALL RemoveSequencesActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL RemoveSequencesActionAsnWrite PROTO (( RemoveSequencesActionPtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr MacroActionChoicePtr; typedef ValNode MacroActionChoice; #define MacroActionChoice_aecr 1 #define MacroActionChoice_parse 2 #define MacroActionChoice_add_feature 3 #define MacroActionChoice_remove_feature 4 #define MacroActionChoice_convert_feature 5 #define MacroActionChoice_edit_location 6 #define MacroActionChoice_remove_descriptor 7 #define MacroActionChoice_autodef 8 #define MacroActionChoice_removesets 9 #define MacroActionChoice_trim_junk_from_primer_seq 10 #define MacroActionChoice_trim_stop_from_complete_cds 11 #define MacroActionChoice_fix_usa_and_states 12 #define MacroActionChoice_synchronize_cds_partials 13 #define MacroActionChoice_adjust_for_consensus_splice 14 #define MacroActionChoice_fix_pub_caps 15 #define MacroActionChoice_remove_seg_gaps 16 #define MacroActionChoice_sort_fields 17 #define MacroActionChoice_apply_molinfo_block 18 #define MacroActionChoice_fix_caps 19 #define MacroActionChoice_fix_format 20 #define MacroActionChoice_fix_spell 21 #define MacroActionChoice_remove_duplicate_features 22 #define MacroActionChoice_remove_lineage_notes 23 #define MacroActionChoice_remove_xrefs 24 #define MacroActionChoice_make_gene_xrefs 25 #define MacroActionChoice_make_bold_xrefs 26 #define MacroActionChoice_fix_author 27 #define MacroActionChoice_update_sequences 28 #define MacroActionChoice_add_trans_splicing 29 #define MacroActionChoice_remove_invalid_ecnumbers 30 #define MacroActionChoice_create_tsa_ids 31 #define MacroActionChoice_perform_autofix 32 #define MacroActionChoice_fix_sets 33 #define MacroActionChoice_apply_table 34 #define MacroActionChoice_remove_sequences 35 #define MacroActionChoice_propagate_sequence_technology 36 #define MacroActionChoice_add_file_descriptors 37 #define MacroActionChoice_propagate_missing_old_name 38 #define MacroActionChoice_autoapply_structured_comments 39 NLM_EXTERN MacroActionChoicePtr LIBCALL MacroActionChoiceFree PROTO ((MacroActionChoicePtr )); NLM_EXTERN MacroActionChoicePtr LIBCALL MacroActionChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL MacroActionChoiceAsnWrite PROTO (( MacroActionChoicePtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr SearchFuncPtr; typedef ValNode SearchFunc; #define SearchFunc_string_constraint 1 #define SearchFunc_contains_plural 2 #define SearchFunc_n_or_more_brackets_or_parentheses 3 #define SearchFunc_three_numbers 4 #define SearchFunc_underscore 5 #define SearchFunc_prefix_and_numbers 6 #define SearchFunc_all_caps 7 #define SearchFunc_unbalanced_paren 8 #define SearchFunc_too_long 9 #define SearchFunc_has_term 10 NLM_EXTERN SearchFuncPtr LIBCALL SearchFuncFree PROTO ((SearchFuncPtr )); NLM_EXTERN SearchFuncPtr LIBCALL SearchFuncAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SearchFuncAsnWrite PROTO (( SearchFuncPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * SimpleReplace * **************************************************/ typedef struct struct_Simple_replace { CharPtr replace; Uint1 whole_string; Uint1 weasel_to_putative; } SimpleReplace, PNTR SimpleReplacePtr; NLM_EXTERN SimpleReplacePtr LIBCALL SimpleReplaceFree PROTO ((SimpleReplacePtr )); NLM_EXTERN SimpleReplacePtr LIBCALL SimpleReplaceNew PROTO (( void )); NLM_EXTERN SimpleReplacePtr LIBCALL SimpleReplaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SimpleReplaceAsnWrite PROTO (( SimpleReplacePtr , AsnIoPtr, AsnTypePtr)); typedef ValNodePtr ReplaceFuncPtr; typedef ValNode ReplaceFunc; #define ReplaceFunc_simple_replace 1 #define ReplaceFunc_haem_replace 2 NLM_EXTERN ReplaceFuncPtr LIBCALL ReplaceFuncFree PROTO ((ReplaceFuncPtr )); NLM_EXTERN ReplaceFuncPtr LIBCALL ReplaceFuncAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ReplaceFuncAsnWrite PROTO (( ReplaceFuncPtr , AsnIoPtr, AsnTypePtr)); /************************************************** * * ReplaceRule * **************************************************/ typedef struct struct_Replace_rule { ValNodePtr replace_func; Uint1 move_to_note; } ReplaceRule, PNTR ReplaceRulePtr; NLM_EXTERN ReplaceRulePtr LIBCALL ReplaceRuleFree PROTO ((ReplaceRulePtr )); NLM_EXTERN ReplaceRulePtr LIBCALL ReplaceRuleNew PROTO (( void )); NLM_EXTERN ReplaceRulePtr LIBCALL ReplaceRuleAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL ReplaceRuleAsnWrite PROTO (( ReplaceRulePtr , AsnIoPtr, AsnTypePtr)); /* following #defines are for enumerated type, not used by object loaders */ #define Fix_type_none 0 #define Fix_type_typo 1 #define Fix_type_putative_typo 2 #define Fix_type_quickfix 3 #define Fix_type_no_organelle_for_prokaryote 4 #define Fix_type_might_be_nonfunctional 5 #define Fix_type_database 6 #define Fix_type_remove_organism_name 7 #define Fix_type_inappropriate_symbol 8 #define Fix_type_evolutionary_relationship 9 #define Fix_type_use_protein 10 #define Fix_type_hypothetical 11 #define Fix_type_british 12 #define Fix_type_description 13 #define Fix_type_gene 14 /************************************************** * * SuspectRule * **************************************************/ typedef struct struct_Suspect_rule { struct struct_Suspect_rule PNTR next; ValNodePtr find; ValNodePtr except; ValNodePtr feat_constraint; Uint2 rule_type; struct struct_Replace_rule PNTR replace; CharPtr description; } SuspectRule, PNTR SuspectRulePtr; NLM_EXTERN SuspectRulePtr LIBCALL SuspectRuleFree PROTO ((SuspectRulePtr )); NLM_EXTERN SuspectRulePtr LIBCALL SuspectRuleNew PROTO (( void )); NLM_EXTERN SuspectRulePtr LIBCALL SuspectRuleAsnRead PROTO (( AsnIoPtr, AsnTypePtr)); NLM_EXTERN Boolean LIBCALL SuspectRuleAsnWrite PROTO (( SuspectRulePtr , AsnIoPtr, AsnTypePtr)); #ifdef __cplusplus /* { */ } #endif #endif /* _objmacro_ */ #undef NLM_EXTERN #ifdef NLM_EXPORT #define NLM_EXTERN NLM_EXPORT #else #define NLM_EXTERN #endif