1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
#!/bin/sh
#
# $Id: build.me64,v 6.3 2008/01/25 19:59:38 ucko Exp $
#
# W A R N I N G ! ! !
# That script is intended for internal use in NCBI only
#
#
NCBI=/netopt/ncbi_tools/ncbi64
PATH=/usr/bin:/bin:/sbin:/usr/sbin:/usr/ccs/bin:$NCBI/bin:$PATH
export PATH NCBI
#check that we're running within NCBI
MYDOMAIN=`grep '^domain' /etc/resolv.conf |awk '{print $2}'`
test -z "$MYDOMAIN" && MYDOMAIN="`hostname --fqdn 2>/dev/null`"
test -z "$MYDOMAIN" && MYDOMAIN="`domainname`"
if [ `echo "$MYDOMAIN" | grep -c 'nlm[.]nih[.]gov$'` != 1 ] ; then
echo That script is intended for internal use in NCBI only
exit 1
fi
SCRIPTDIR=/am/ncbiapdata/scripts/build
echo "Building ASNs"
( cd asn; rm -f asn.all asnpub.all ; chmod +x *.unx; sh all.unx; sh allpub.unx)
if [ ! -d "asnstat" ] ; then
mkdir asnstat; ( cd asnstat; sh ../asn/makestat.unx )
test -f $SCRIPTDIR/rebuild_asn && $SCRIPTDIR/rebuild_asn .
fi
rm -f data/*.val
asntool -m asn/asn.all -v data/seqcode.prt -e data/seqcode.val || exit 1
asntool -m asn/asn.all -v data/featdef.prt -e data/featdef.val
asntool -m asn/asn.all -v data/gc.prt -e data/gc.val
cat biostruc/*.asn asn/asn.all >/tmp/big$$.asn
asntool -m /tmp/big$$.asn -v data/bstdt.prt -e data/bstdt.val
rm -f /tmp/big$$.asn
#now make needed directories if they're absent
mkdir -p include bin lib build altlib shlib >/dev/null 2>&1
if [ ! -d "network/socks/socks.cstc.4.2" ]; then
cd network/socks; zcat socks.cstc.4.2.pre1.tar.Z | tar xf -;
rm -rf socks.cstc.4.2; mv socks.cstc.4.2.pre1 socks.cstc.4.2;
rm -rf socks.cstc.4.2/rtelnet; rm -rf socks.cstc.4.2/rftp;
cd ../..
fi
if [ ! -d "ncbi/network/encrypt/ripem" ]; then
cd network/encrypt; tar xf ripem.tar ripem/rsaref/source;
cd ../..
fi
echo "building the NCBI C toolkit on Solaris/Sparc in 64-bit mode"
cd build
dmake -j 3 -f $SCRIPTDIR/make.master LCL_TARGET=sol TARGET_INCLUDE=include \
DBUGEXTRA=-KPIC DBUGEXTRA2=-g COPYBIN=bin CLLIB=cllib all
exit 0
|