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Description: Make mricron works with Debian's FSL
Forwarded: not-needed
Author: Michael Hanke <michael.hanke@gmail.com>
--- a/bet.pas
+++ b/bet.pas
@@ -63,8 +63,11 @@
AStringList := TStringList.Create;
AProcess.CommandLine := lCmd;
{$IFDEF UNIX}
- AProcess.Environment.Add(gBGImg.FSLDIR);
- AProcess.Environment.Add(gBGImg.FSLOUTPUTTYPE);
+ // On Debian FSLDIR is set outside mricron
+ //AProcess.Environment.Add(gBGImg.FSLDIR);
+ // and we must not set any environment variable to let the child process
+ // inherit the current environment settings
+ //AProcess.Environment.Add(gBGImg.FSLOUTPUTTYPE);
//AProcess.Environment.Add('FSLDIR=/usr/local/fsl');
//AProcess.Environment.Add('FSLOUTPUTTYPE=NIFTI_GZ');
@@ -84,18 +87,20 @@
lCmd: string;
begin
result := false;
- lCmd := extractfilepath(paramstr(0))+'bet';
- {$IFNDEF Unix}
- lCmd := lCmd+'.exe';
- {$ENDIF}
- if not PathExists (lCmd) then begin
- lCmd := '/usr/local/fsl/bin/bet_8UI';
- if not PathExists (lCmd) then begin
- lCmd := '/usr/local/fsl/bin/bet';
- if not PathExists (lCmd) then
- exit;
- end;
- end; //no bet in home folder...
+ // On Debian we guarantee that bet is globally available if installed at all
+ lCmd := 'bet';
+ //lCmd := extractfilepath(paramstr(0))+'bet';
+ //{$IFNDEF Unix}
+ //lCmd := lCmd+'.exe';
+ //{$ENDIF}
+ //if not PathExists (lCmd) then begin
+ // lCmd := '/usr/local/fsl/bin/bet_8UI';
+ // if not PathExists (lCmd) then begin
+ // lCmd := '/usr/local/fsl/bin/bet';
+ // if not PathExists (lCmd) then
+ // exit;
+ // end;
+ //end; //no bet in home folder...
lCmd := lCmd+' "'+lInFile+'" "'+lOutFile +'" -f '+floattostr(lFrac);
BETForm.Memo1.Lines.Add(lCmd);
RunCmd(lCmd);
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