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.pc/applied-patches

.pc/clang.patch/

.pc/clang.patch/src/

.pc/clang.patch/src/release/

.pc/clang.patch/src/release/parallel_blat.cpp

.pc/clang.patch/src/tools/

.pc/clang.patch/src/tools/parallel_rna_blat.cpp

.pc/use-atomic-for-mips.patch/

.pc/use-atomic-for-mips.patch/bin/

.pc/use-atomic-for-mips.patch/bin/Makefile.in

.pc/use-atomic-for-mips.patch/src/

.pc/use-atomic-for-mips.patch/src/basic/

.pc/use-atomic-for-mips.patch/src/basic/atomic_integer.h

AUTHORS

Makefile.in

aclocal.m4

bin/Makefile.am

bin/Makefile.in

configure

configure.ac

debian/changelog

debian/patches/

debian/patches/clang.patch

debian/patches/series

debian/patches/use-atomic-for-mips.patch

debian/watch

gtest_src/

gtest_src/gtest/

gtest_src/gtest/gtest-all.cc

gtest_src/gtest/gtest.h

gtest_src/gtest/gtest_main.cc

lib/Makefile.am

lib/Makefile.in

script/Makefile.in

script/scan.py

src/basic/atomic_integer.h

src/test/

src/test/atomic_integer_unittest.cpp

src/test/bit_edges_unittest.cpp

src/test/compact_sequence_unittest.cpp

src/test/hash_map_unittest.cpp

src/test/hash_set_unittest.cpp

src/test/hash_table_unittest.cpp

src/test/histgram_unittest.cpp

src/test/kmer_unittest.cpp

src/test/managed_list_unittest.cpp

src/test/sequence_unittest.cpp

src/test/short_sequence_unittest.cpp

src/test/vertex_status_unittest.cpp

test/Makefile.am

test/Makefile.in

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