1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
|
# -*- org -*-
#+TODO: TODO BROKEN DEFERRED | CANTTEST IGNORE DONE
# This file lists general tasks as well as the current status of all
# GNU packages (including sub-projects GNOME and GNUstep). Note that
# some packages are listed as IGNORED, generally due to being retired
# packages or non-software packages; these are counted as completed
# tasks. BROKEN packages do not build correctly; these are not
# counted as completed tasks. DEFERRED packages typically do not yet
# have a release available and will be implemented upon their
# availability; these are not counted as completed. CANTTEST packages
# have hardware or software dependencies that make testing their build
# process difficult or impossible.
#
# Note: this file is best viewed in Emacs Org-Mode
#
to do : learn org-mode
this file is out of date
* General tasks [0%]
** TODO Old tasks, pre-Brandon...to be reconsidered [88%]
*** DONE libc breaks everything when it is installed (bad ABI)
CLOSED: [2013-01-14 Mon 00:13]
*** DONE Karl: I think the most important thing to support is configure
CLOSED: [2011-03-01 Tue 13:54]
:LOGBOOK:
- State "DONE" from "" [2011-03-01 Tue 13:54]
:END:
--prefix=/somewhere. Probably that, and just about everything, can
simply be passed to the subdirs. So the job of top level
configure/makefile would be to loop over all supported subdirs and call
configure/make for each.
*** DONE Karl: Based on my experience with TeX Live, I expect it would also be
greatly appreciated if it was possible to say
configure --disable-foobar
to explicitly disable building of any package foobar for whatever
reason. (done: see IGNORE_DEPS in gar.conf.mk)
*** DONE util/buildit.sh needs to delete old logs/*.FAIL entries
CLOSED: [2011-04-13 Wed 11:56]
- State "DONE" [2011-04-13 Wed 11:56]
*** IGNORE nettle needs --libdir => lib instead of lib64
CLOSED: [2013-11-06 Wed 23:49]
*** IGNORE texinfo needs make install-tex TEXMF=/gnu
CLOSED: [2013-11-06 Wed 23:49]
*** DONE build bazaar tries to build the zlib dependency. But here I get the
error Message:
cd work/zlib-1.2.5 && ./configure '--prefix=/usr/local/gltools/gnu' '--exec-prefix=/usr/local/gltools/gnu/arch_a'
unknown option: --exec-prefix=/usr/local/gltools/gnu/arch_a
(Brandon: seems to work...done)
*** DONE for i.e. make the installation puts its files
/usr/local/gltools/gnu/packages/make-3.81/arch_a/ and
/usr/local/gltools/gnu/packages/make-3.81/share/, but installing from
a second architecture deletes the whole
/usr/local/gltools/gnu/packages/make-3.81 tree. (done: GARPROFILE)
*** TODO deletion of the whole packages tree for a project would also delete
any customization in the share tree while installing for arch_b (like
in share/emacs/23.3/site-lisp/ or share/emacs/site-lisp/).
** TODO re-implement tests and verify packages
*** mainly need to check projects not using gar.lib/auto.mk for test targets
*** re-enable USE_TESTS in gar.lib/auto.mk
** TODO GAR/GARStow decrufting
*** TODO (maybe) rename GAR* variables to GSRC* (ie GARNAME -> GSRCNAME)
**** not really necessary but GSRC is pretty removed from GAR by now so
it wouldn't hurt anything and it might help the variables to make
more immediate sense.
**** TODO GARNAME
**** TODO GARDIR
**** TODO GARVERSION
**** TODO GARCHIVEDIR
**** TODO GARPROFILE
**** TODO GARARCH
**** TODO GARBALLDIR
*** TODO (maybe) rename gar.* files to gsrc.* (ie gar.lib.mk -> gsrc.lib.mk)
**** TODO gar.mk
**** TODO gar.lib.mk
**** TODO gar.env.mk
**** TODO gar.lib/
**** TODO gar.master.mk
*** TODO clean out unnecessary sites from gar.master.mk
*** TODO (maybe) clean out unnecessary rules from gar.lib.mk
** TODO Add missing gpg-keyrings
aris
c-graph
remotecontrol
* GNU packages [424/473] [89%]
** IGNORE 3dkit
*** decommissioned
** DONE 3dldf
CLOSED: [2012-12-16 Sun 20:11]
** DONE a2ps
CLOSED: [2012-12-16 Sun 20:11]
** IGNORE abcsh
CLOSED: [2012-12-16 Sun 20:11]
*** decommissioned
** DONE acct
CLOSED: [2012-12-16 Sun 20:11]
** DONE acm
CLOSED: [2012-12-16 Sun 20:11]
** DONE adns
CLOSED: [2012-12-16 Sun 20:12]
** DONE aeneas
CLOSED: [2012-12-16 Sun 20:12]
*** decommissioned
** IGNORE aetherspace
CLOSED: [2013-03-24 Sun 16:23]
*** retired
** DONE alive
CLOSED: [2012-12-16 Sun 20:12]
** DONE anubis
CLOSED: [2012-12-16 Sun 20:12]
** DONE apl
CLOSED: [2013-10-04 Fri 16:49]
** DONE archimedes
CLOSED: [2012-12-16 Sun 20:12]
** DONE aris
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE aroundme
CLOSED: [2012-12-16 Sun 20:12]
*** decommissioned
** DONE aspell
CLOSED: [2012-12-16 Sun 20:12]
** DONE auctex
CLOSED: [2012-12-16 Sun 20:12]
** DONE autoconf
CLOSED: [2012-12-16 Sun 20:12]
** DONE autoconf-archive
CLOSED: [2012-12-16 Sun 20:12]
** DONE autogen
CLOSED: [2012-12-16 Sun 20:12]
** DONE automake
CLOSED: [2012-12-16 Sun 20:12]
** DONE avl
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE awacs
CLOSED: [2012-12-22 Sat 19:07]
*** (decommissioned)
** DONE ballandpaddle
CLOSED: [2012-12-16 Sun 20:12]
** DONE barcode
CLOSED: [2012-12-16 Sun 20:12]
** DONE bash
CLOSED: [2012-12-16 Sun 20:12]
** DONE bayonne
CLOSED: [2012-12-16 Sun 20:12]
** DONE bazaar
CLOSED: [2012-12-16 Sun 20:12]
** DONE bc
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE bfd
CLOSED: [2012-12-16 Sun 21:23]
*** packaged with binutil
** DONE binutils
CLOSED: [2012-12-16 Sun 20:12]
** DONE bison
CLOSED: [2012-12-16 Sun 20:12]
** DONE bool
CLOSED: [2012-12-16 Sun 20:12]
** DONE bpel2owfn
CLOSED: [2013-10-04 Fri 12:56]
** DONE c-graph
CLOSED: [2012-12-16 Sun 20:12]
** DONE ccaudio
CLOSED: [2013-10-04 Fri 13:51]
** DONE ccd2cue
CLOSED: [2013-11-07 Thu 10:37]
** DONE ccide
CLOSED: [2012-12-16 Sun 20:12]
** DONE ccrtp
CLOSED: [2012-12-16 Sun 20:12]
** DONE ccscript
CLOSED: [2013-10-09 Wed 15:28]
*** ucommon-related errors
** DONE cfengine
CLOSED: [2012-12-16 Sun 20:12]
** DONE cflow
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE cfs-el
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE cgicc
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE checker
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE chess
CLOSED: [2012-12-16 Sun 20:12]
** CANTTEST cim
*** not x86_64 compatible; can't test without building a VM
** DONE classpath
CLOSED: [2012-12-16 Sun 20:12]
** DONE classpathx-activation
CLOSED: [2013-11-28 Thu 19:47]
** BROKEN classpathx-comm
** IGNORE classpathx-jaxp
CLOSED: [2013-11-06 Wed 23:24]
merged into classpath
** DONE classpathx-mail
CLOSED: [2013-11-28 Thu 20:00]
** DONE classpathx-servletapi
CLOSED: [2013-11-06 Wed 23:25]
** DONE clisp
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED cobol
*** still in early (stalled?) development
** DONE combine
CLOSED: [2012-12-16 Sun 20:12]
** DONE commoncpp
CLOSED: [2012-12-16 Sun 20:12]
** DONE complexity
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE config:
CLOSED: [2012-12-16 Sun 20:16]
*** dev package (no install) only; low priority
** IGNORE cons
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE coreutils
CLOSED: [2012-12-16 Sun 20:12]
** DONE cpio
CLOSED: [2012-12-16 Sun 20:12]
** DONE cppi
CLOSED: [2012-12-16 Sun 20:12]
** DONE cssc
CLOSED: [2012-12-16 Sun 20:12]
** DONE cursynth
CLOSED: [2014-03-18 Tue 22:17]
** DONE dap
CLOSED: [2012-12-16 Sun 20:12]
** DONE datamash
CLOSED: [2014-08-03 Sun 10:52]
** IGNORE dc:
CLOSED: [2012-12-16 Sun 20:16]
*** installed as part of bc
** DONE ddd
CLOSED: [2012-12-16 Sun 20:12]
** DONE ddrescue
CLOSED: [2012-12-16 Sun 20:12]
** DONE dejagnu
CLOSED: [2012-12-16 Sun 20:12]
** DONE denemo
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE dgs
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE dico
CLOSED: [2012-12-16 Sun 20:12]
** DONE diction
CLOSED: [2012-12-16 Sun 20:12]
** DONE direvent
CLOSED: [2014-10-06 Mon 20:14]
** DONE diffutils
CLOSED: [2012-12-16 Sun 20:12]
** DONE dionysus
CLOSED: [2012-12-16 Sun 20:12]
** DONE dismal
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE dld
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE dmd
CLOSED: [2012-12-16 Sun 20:12]
** DONE dominion
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE dotgnu
CLOSED: [2013-01-15 Tue 22:41]
*** decommissioned
** IGNORE dotgnu-forum
CLOSED: [2013-01-15 Tue 22:42]
*** decommissioned
** IGNORE dotgnu-pnet
CLOSED: [2013-01-15 Tue 22:42]
*** decommissioned
** IGNORE dr.genius
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DEFERRED dr-geo
*** GNU version is long unmaintained
** DONE easejs
CLOSED: [2014-07-08 Tue 19:47]
** DONE ed
CLOSED: [2012-12-16 Sun 20:12]
** DONE edma
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE elib
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE electric
CLOSED: [2012-12-16 Sun 20:12]
** DONE emacs
CLOSED: [2012-12-16 Sun 20:12]
** DONE emacs-muse
CLOSED: [2012-12-16 Sun 20:12]
** DONE emms
CLOSED: [2012-12-16 Sun 20:12]
** DONE enscript
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED eprints
*** not sure about the status of this
** DEFERRED epsilon
*** no release available
** DONE fdisk
CLOSED: [2012-12-16 Sun 20:12]
** DONE ferret
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE ffp
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE fhp
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE findutils
CLOSED: [2012-12-16 Sun 20:12]
** DONE fisicalab
CLOSED: [2013-12-29 Sun 14:44]
** DONE fontutils
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE free (gnu.free)
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE freedink
CLOSED: [2012-12-16 Sun 20:12]
** DONE freefont
CLOSED: [2012-12-16 Sun 20:12]
** DONE freeipmi
CLOSED: [2012-12-16 Sun 20:12]
** DONE freetalk
CLOSED: [2012-12-16 Sun 20:12]
** DONE fribidi
CLOSED: [2012-12-16 Sun 20:12]
** DONE gama
CLOSED: [2012-12-16 Sun 20:12]
** DONE garpd
CLOSED: [2012-12-16 Sun 20:12]
** DONE gawk
CLOSED: [2012-12-16 Sun 20:12]
** DONE gcal
CLOSED: [2012-12-16 Sun 20:12]
** DONE gcc
CLOSED: [2012-12-16 Sun 20:12]
** DONE gceb
CLOSED: [2013-03-30 Sat 12:46]
** DONE gcide
CLOSED: [2012-12-16 Sun 20:12]
** DONE gcl
CLOSED: [2013-10-04 Fri 12:27]
** DONE gcompris
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gcron
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE gdb
CLOSED: [2012-12-16 Sun 20:12]
** DONE gdbm
CLOSED: [2012-12-16 Sun 20:12]
** DONE gengen
CLOSED: [2012-12-16 Sun 20:12]
** DONE gengetopt
CLOSED: [2012-12-16 Sun 20:12]
** DONE gettext
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gfe
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE gforth
CLOSED: [2012-12-16 Sun 20:12]
** CANTTEST ggradebook
*** requires GTK+ 1
** IGNORE ggv
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE ghostscript
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gicqd
CLOSED: [2012-12-16 Sun 20:
*** decommissioned
** DONE gidfwizard
CLOSED: [2013-03-30 Sat 12:46]
** DONE gift
CLOSED: [2012-12-16 Sun 20:12]
** DONE gimp
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE giptables
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE gjdoc
CLOSED: [2013-11-28 Thu 20:03]
** BROKEN gleem
*** extremely inflexible Makefile
** DONE global
CLOSED: [2012-12-16 Sun 20:12]
** DONE glpk
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED glue
*** no release available
** DONE gmediaserver
CLOSED: [2013-02-03 Sun 23:41]
*** libupnp errors
** IGNORE gmorph
CLOSED: [2013-10-09 Wed 15:14]
*** decommissioned
** DONE gmp
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnash
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnat
CLOSED: [2012-12-16 Sun 21:30]
*** packaged with gcc
** DONE gnats
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnatsweb
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnochive
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE gnotary
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE gnotepad+
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DEFERRED gnowsys
*** no release available
** IGNORE gnu-crypto
CLOSED: [2012-12-16 Sun 20:16]
*** generally merged with classpath; low priority
** DONE gnu-c-manual
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnu-pw-mgr
CLOSED: [2013-11-07 Thu 23:19]
no release yet
** IGNORE gnu-queue
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DEFERRED gnuae
*** no release available
** DONE gnubatch
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnubios
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE gnubg
** IGNORE gnucad
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE gnubiff
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnubik
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnucap
CLOSED: [2013-03-19 Tue 11:19]
** DONE gnucash
CLOSED: [2012-12-16 Sun 22:28]
** IGNORE gnucomm
CLOSED: [2012-12-16 Sun 20:16]
*** see individual packages (sipwitch etc)
** DONE gnudos
CLOSED: [2014-07-08 Tue 19:46]
** DONE gnue-appserver
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnue-common
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnue-forms
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnue-navigator
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnue-reports
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnufi
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DEFERRED gnufm
no release available
** DONE gnugo
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnuit
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnujdoc
CLOSED: [2012-12-16 Sun 20:16]
*** just documentation
** DONE gnujump
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED gnukart
*** only one ancient release
** IGNORE gnulib
CLOSED: [2012-12-16 Sun 20:16]
*** dev-only (no install) package; low priority
** CANTTEST gnumach
** DEFERRED gnumed
*** strange (non-existent?) install procedure; needs research
** DONE gnump3d
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnun
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnunet
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnunet-fuse
CLOSED: [2013-12-28 Sat 22:24]
** DONE gnunet-gtk
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnupedia
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE gnupg
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnupod
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnuprologjava
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnuradio
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnurobots
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnuschool
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnushogi
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnuskies
CLOSED: [2013-10-09 Wed 15:17]
*** decommissioned
** BROKEN gnusound
*** gnome hell
** DEFERRED gnuspeech
*** no release available
** DONE gnuspool
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnusql
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE gnustandards
CLOSED: [2012-12-16 Sun 20:16]
*** not a package?
** DONE gnutls
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnutrition
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnuts
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE gnuzilla
CLOSED: [2012-12-16 Sun 20:16]
*** see icecat
** IGNORE goldwater
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE goodbye
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE goose
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE goptical
CLOSED: [2012-12-16 Sun 20:12]
** BROKEN gpaint
*** Requires outdated GTK2, or some other Gnome hell
** DONE gperf
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gphoto
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE gprolog
CLOSED: [2012-12-16 Sun 20:12]
** DONE grabcomics
CLOSED: [2013-01-16 Wed 23:12]
** IGNORE graphics
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** BROKEN greg
*** requires ancient libtool
** DONE grep
CLOSED: [2012-12-16 Sun 20:12]
** DONE gretl
CLOSED: [2012-12-16 Sun 20:12]
** DONE groff
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE grover
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE grub
CLOSED: [2012-12-16 Sun 20:12]
** DONE gsasl
CLOSED: [2012-12-16 Sun 20:12]
** DONE gsegrafix
CLOSED: [2012-12-16 Sun 20:12]
** DONE gsl
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gsrc
CLOSED: [2012-12-16 Sun 20:16]
*** infinite recursion
** DONE gss
CLOSED: [2012-12-16 Sun 20:12]
** DONE gtick
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gtkeditor
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE gtkeyboard
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE gtypist
CLOSED: [2012-12-16 Sun 20:12]
** DONE guile
CLOSED: [2012-12-16 Sun 20:12]
** DONE guile-clutter
CLOSED: [2013-01-15 Tue 22:14]
** DONE guile-dbi
CLOSED: [2012-12-16 Sun 20:12]
** DONE guile-gnome-platform
CLOSED: [2012-12-16 Sun 20:12]
** TODO guile-gstreamer
*** Build fails due to not finding guile-gnome-glib
maybe due to being significantly older than the guile-gnome-platform package
** DONE guile-gtk
CLOSED: [2012-12-16 Sun 20:12]
** BROKEN guile-gtksourceview
*** Build fails due to not finding guile-gnome-glib
maybe due to being significantly older than the guile-gnome-platform package
** DONE guile-ncurses
CLOSED: [2012-12-16 Sun 20:12]
** DONE guile-opengl
CLOSED: [2014-07-08 Tue 19:47]
** DONE guile-rpc
CLOSED: [2014-05-23 Fri 16:36]
*** only alpha releases available
** DONE guile-sdl
CLOSED: [2013-04-20 Sat 10:34]
** TODO guix
** DONE gurgle
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE guss
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE gv
CLOSED: [2012-12-16 Sun 20:12]
** DONE gvpe
CLOSED: [2012-12-16 Sun 20:12]
** DONE gxmessage
CLOSED: [2012-12-16 Sun 20:12]
** DONE gzip
CLOSED: [2012-12-16 Sun 20:12]
** CANTTEST halifax-viewer
*** requires GTK 1
** CANTTEST halifax-sender
*** requires GTK 1
** TODO health
** IGNORE hegemonie
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE hello
CLOSED: [2012-12-16 Sun 20:12]
** DONE help2man
CLOSED: [2012-12-16 Sun 20:12]
** DONE hp2xx
CLOSED: [2012-12-16 Sun 20:12]
** DONE httptunnel
CLOSED: [2012-12-16 Sun 20:12]
** TODO hurd
** BROKEN hyperbole
** DONE icecat
CLOSED: [2012-12-16 Sun 20:12]
** DONE idutils
CLOSED: [2012-12-16 Sun 20:12]
** DONE ignuit
CLOSED: [2013-01-20 Sun 16:43]
** DONE indent
CLOSED: [2012-12-16 Sun 20:12]
** DONE inetlib
CLOSED: [2013-11-23 Sat 13:26]
** DONE inetutils
CLOSED: [2012-12-16 Sun 20:12]
** DONE intlfonts
CLOSED: [2012-12-22 Sat 18:48]
** DONE jacal
CLOSED: [2012-12-16 Sun 20:12]
** DONE java-getopt
CLOSED: [2012-12-22 Sat 19:03]
** IGNORE jdresolve
CLOSED: [2013-10-09 Wed 15:18]
*** decommissioned
** DONE jel
CLOSED: [2012-12-16 Sun 20:12]
** DONE jwhois
CLOSED: [2012-12-16 Sun 20:12]
** DONE kawa
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED kopi
*** no release available
** BROKEN leg
*** requires use of autoreconf, but that process fails
** IGNORE lengualibre
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE leonardo
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE less
CLOSED: [2012-12-16 Sun 20:12]
** DONE libassuan
CLOSED: [2012-12-16 Sun 20:12]
** DONE libc
CLOSED: [2012-12-16 Sun 20:12]
** DONE libcdio
CLOSED: [2012-12-16 Sun 20:12]
** DONE libextractor
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED libffcall
*** no release available
** DONE libgcrypt
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE libiberty
CLOSED: [2012-12-22 Sat 19:42]
*** packaged with binutils and gcc
** DONE libiconv
CLOSED: [2012-12-16 Sun 20:12]
** DONE libidn
CLOSED: [2012-12-16 Sun 20:12]
** DONE libksba
CLOSED: [2012-12-16 Sun 20:12]
** DONE libmatheval
CLOSED: [2012-12-16 Sun 20:12]
** DONE libmicrohttpd
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE libopts
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DEFERRED libredwg
*** no release available
** DEFERRED librefm (gnufm)
*** no release available
** DONE librejs
CLOSED: [2012-12-16 Sun 20:12]
** DONE libsigsegv
CLOSED: [2012-12-16 Sun 20:12]
** DONE libsrcinst
CLOSED: [2012-12-16 Sun 20:12]
** DONE libtasn1
CLOSED: [2012-12-16 Sun 20:12]
** DONE libtool
CLOSED: [2012-12-16 Sun 20:12]
** DONE libunistring
CLOSED: [2012-12-16 Sun 20:12]
** BROKEN libxmi
*** old libtool problems
** DONE lightning
CLOSED: [2012-12-16 Sun 20:12]
** DONE lilypond
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED lims
no release yet
** DONE linux-libre
CLOSED: [2012-12-16 Sun 20:12]
** DONE liquidwar6
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE lispintro
CLOSED: [2012-12-22 Sat 19:47]
*** just documentation
** DONE lrzsz
CLOSED: [2012-12-22 Sat 20:02]
** DONE lsh
CLOSED: [2012-12-16 Sun 20:12]
** DONE m4
CLOSED: [2012-12-16 Sun 20:12]
** DONE macchanger
CLOSED: [2012-12-16 Sun 20:12]
** DONE mailman
CLOSED: [2012-12-16 Sun 20:12]
** DONE mailutils
CLOSED: [2012-12-16 Sun 20:12]
** DONE make
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE mana
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE marst
CLOSED: [2012-12-16 Sun 20:12]
** DONE maverik
CLOSED: [2013-03-18 Mon 23:37]
** DONE mc
CLOSED: [2012-12-16 Sun 20:12]
** DONE mcron
CLOSED: [2012-12-16 Sun 20:12]
** DONE mcsim
CLOSED: [2012-12-16 Sun 20:12]
** DONE mdk
CLOSED: [2012-12-16 Sun 20:12]
** DONE mediagoblin
CLOSED: [2012-12-16 Sun 20:12]
** DONE melting
CLOSED: [2012-12-22 Sat 20:38]
** IGNORE messenger
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DEFERRED metaexchange
*** no release available
** DONE metahtml
CLOSED: [2013-04-03 Wed 00:47]
*** build mysteriously fails
** IGNORE mgcp
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE mifluz
CLOSED: [2012-12-16 Sun 20:12]
** DONE mig
CLOSED: [2012-12-16 Sun 20:12]
** DONE miscfiles
CLOSED: [2012-12-16 Sun 20:12]
** DONE mit-scheme
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE mll2html
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE moe
CLOSED: [2012-12-16 Sun 20:12]
** DONE motti
CLOSED: [2012-12-16 Sun 20:12]
** DONE mpc
CLOSED: [2012-12-16 Sun 20:12]
** DONE mpfr
CLOSED: [2012-12-16 Sun 20:12]
** DONE mtools
CLOSED: [2012-12-16 Sun 20:12]
** DONE myserver
CLOSED: [2012-12-16 Sun 20:12]
** DONE nana
CLOSED: [2013-01-04 Fri 23:42]
** DONE nano
CLOSED: [2012-12-16 Sun 20:12]
** DONE ncurses
CLOSED: [2012-12-16 Sun 20:12]
** DONE nettle
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE network
CLOSED: [2012-12-16 Sun 20:16]
*** metaproject (see gnunet, social, gnufm)
** IGNORE obst
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE octal
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE ocrad
CLOSED: [2012-12-16 Sun 20:12]
** DONE octave
CLOSED: [2012-12-16 Sun 20:12]
** DONE oleo
CLOSED: [2013-01-20 Sun 15:33]
** BROKEN orgadoc
*** Eiffel hell
** DONE osip
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE p2c
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** IGNORE packaging
CLOSED: [2012-12-16 Sun 20:16]
*** retired metaproject
** BROKEN panorama
*** `configure' fails, apparently due to libtool; probably requires an old
version
** IGNORE paperclips
CLOSED: [2013-10-09 Wed 15:34]
*** decommissioned
** DONE parallel
CLOSED: [2012-12-16 Sun 20:12]
** DONE parted
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED pascal
*** only alpha releases available
** DONE patch
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE patchwork
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE paxutils
CLOSED: [2013-01-16 Wed 23:55]
** DONE pcb
CLOSED: [2013-01-17 Thu 00:04]
** DEFERRED pdf
*** no release available?
** DONE pem
CLOSED: [2012-12-16 Sun 20:12]
** DONE pexec
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE pgccfd
CLOSED: [2013-01-05 Sat 00:04]
*** package is documentation only
** DEFERRED phantom_home
*** extremely out-dated c++ code; defer until a new release
** DONE pies
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED pipo
*** can't find any release!
** IGNORE pips
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE plotutils
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE poc
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DEFERRED polyxmass
*** no release available? currently unmaintained
** DEFERRED powerguru
*** no release available
** IGNORE proto
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE proxyknife
CLOSED: [2012-12-16 Sun 20:12]
** DONE pspp
CLOSED: [2012-12-16 Sun 20:12]
** DONE psychosynth
CLOSED: [2013-01-05 Sat 18:17]
** DONE pth
CLOSED: [2012-12-16 Sun 20:12]
** DONE pyconfigure
CLOSED: [2012-12-16 Sun 20:16]
*** dev only (no install); low priority
** DEFERRED pythonwebkit
*** no release available
** IGNORE qexo
CLOSED: [2013-01-12 Sat 11:24]
*** included in kawa
** DEFERRED quickthreads
*** no release available yet
** DONE R
CLOSED: [2013-01-13 Sun 23:42]
** DONE radius
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE rat (decommissioned)
CLOSED: [2012-12-16 Sun 20:16]
** DONE rcs
CLOSED: [2012-12-16 Sun 20:12]
** DONE readline
CLOSED: [2012-12-16 Sun 20:12]
** DONE recutils
CLOSED: [2012-12-16 Sun 20:12]
** DONE reftex
CLOSED: [2013-01-13 Sun 22:59]
** DONE remotecontrol
CLOSED: [2013-01-11 Fri 20:30]
** BROKEN rottlog
*** permissions hell
** DONE rpge
CLOSED: [2013-10-09 Wed 15:20]
** DONE rush
CLOSED: [2012-12-16 Sun 20:12]
** DONE sauce
CLOSED: [2013-01-17 Thu 22:10]
** BROKEN sather
*** super-unfriendly Make system
** DONE sauce
CLOSED: [2012-12-16 Sun 20:12]
** DONE scm
CLOSED: [2012-12-16 Sun 20:12]
** DONE screen
CLOSED: [2012-12-16 Sun 20:12]
** DONE sed
CLOSED: [2012-12-16 Sun 20:12]
** DONE serveez
CLOSED: [2013-02-03 Sun 11:46]
** DONE sharutils
CLOSED: [2012-12-16 Sun 20:12]
** DONE shishi
CLOSED: [2012-12-16 Sun 20:12]
** DONE shmm
CLOSED: [2012-12-16 Sun 20:12]
** DONE shtool
CLOSED: [2012-12-16 Sun 20:12]
** DONE sipwitch
CLOSED: [2012-12-16 Sun 20:12]
** DONE slib
CLOSED: [2012-12-16 Sun 20:12]
** DONE smalltalk
CLOSED: [2012-12-16 Sun 20:12]
** DONE smarteiffel
CLOSED: [2012-12-16 Sun 20:12]
** DONE snakecharmer
CLOSED: [2013-01-17 Thu 22:24]
** TODO social
** DONE solfege
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE songanizer
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE sourceinstall
CLOSED: [2012-12-16 Sun 20:12]
** DONE sourceinstall-gtk
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE sovix
CLOSED: [2013-04-03 Wed 00:52]
*** decommissioned
** CANTTEST spacechart
*** requires gtk1
** DONE speex
CLOSED: [2013-01-17 Thu 22:28]
** DONE spell
CLOSED: [2012-12-16 Sun 20:12]
** DONE sqltutor
CLOSED: [2012-12-16 Sun 20:12]
** DONE src-highlite
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED stalkerfs
*** no release available
** DONE stow
CLOSED: [2012-12-16 Sun 20:12]
** DONE stump
CLOSED: [2013-01-17 Thu 22:44]
** DONE superopt
CLOSED: [2012-12-16 Sun 20:12]
** DONE swbis
CLOSED: [2013-04-03 Wed 22:51]
** IGNORE sweater
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DEFERRED sysutils
*** no official release (but an SVN tag exists)
** IGNORE sxml
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE talkfilters
CLOSED: [2013-01-14 Mon 00:12]
** DONE tar
CLOSED: [2012-12-16 Sun 20:12]
** DONE termcap
CLOSED: [2012-12-16 Sun 20:12]
** DONE termutils
CLOSED: [2013-03-18 Mon 00:12]
** DONE teseq
CLOSED: [2012-12-16 Sun 20:12]
** DONE teximpatient
CLOSED: [2013-01-14 Mon 00:14]
*** just documentation
** DONE texinfo
CLOSED: [2012-12-16 Sun 20:12]
** DONE texmacs
CLOSED: [2013-03-18 Mon 22:32]
** DONE thales
CLOSED: [2012-12-16 Sun 20:12]
** DONE time
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE toutdoux
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE tramp
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE trans-coord
CLOSED: [2013-01-14 Mon 00:16]
*** GNU translation meta-project; see gnun
** DONE trueprint
CLOSED: [2012-12-16 Sun 20:12]
** DONE ucommon
CLOSED: [2012-12-16 Sun 20:12]
** TODO unifont
** DONE units
CLOSED: [2012-12-16 Sun 20:12]
** DONE unrtf
CLOSED: [2012-12-16 Sun 20:12]
** DONE userv
CLOSED: [2012-12-16 Sun 20:12]
** DONE uucp
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE vc-changelog
CLOSED: [2012-12-16 Sun 20:16]
*** see vc-dwim
** DONE vc-dwim
CLOSED: [2012-12-16 Sun 20:12]
** DONE vcdimager
CLOSED: [2012-12-16 Sun 20:12]
** DONE vera
CLOSED: [2012-12-16 Sun 20:12]
** DEFERRED vmgen
*** no release available
** DONE vmslib
CLOSED: [2013-01-15 Tue 22:33]
*** source release only, not built or installed
** IGNORE w3
CLOSED: [2013-10-09 Wed 15:37]
*** now distributed with emacs via elpa
** DONE wb
CLOSED: [2012-12-16 Sun 20:12]
** DONE wdiff
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE webpublish
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE websocket4j
CLOSED: [2013-01-15 Tue 21:52]
** DONE webstump
CLOSED: [2013-01-17 Thu 23:46]
** DONE wget
CLOSED: [2012-12-16 Sun 20:12]
** DONE which
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE womb
CLOSED: [2013-01-16 Wed 00:23]
*** just source code, but not an actual package per se
** DONE xaos
CLOSED: [2013-01-16 Wed 00:22]
*** program segfaults
** IGNORE xbase
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE xboard
CLOSED: [2012-12-16 Sun 20:12]
** TODO xhippo
*** requires gtk 1
** IGNORE xinfo
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** CANTTEST xlogmaster
*** requires GTK 1
** IGNORE xmhtml
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DEFERRED xmlat
*** no release available
** DONE xnee
CLOSED: [2012-12-16 Sun 20:12]
** DONE xorriso
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE zebra
CLOSED: [2012-12-16 Sun 20:16]
*** decommissioned
** DONE zile
CLOSED: [2012-12-16 Sun 20:12]
** DONE zrtp
CLOSED: [2012-12-16 Sun 20:12]
* GNOME packages
** Core [15/116] [12%]
*** TODO ModemManager
*** TODO NetworkManager
*** TODO at-spi2-atk
*** TODO at-spi2-core
*** DONE atk
CLOSED: [2012-12-16 Sun 20:12]
*** TODO atkmm
*** TODO baobab
*** TODO cantarell-fonts
*** TODO caribou
*** DONE clutter
CLOSED: [2012-12-16 Sun 20:12]
*** TODO clutter-gst
*** TODO clutter-gtk
*** DONE cogl
CLOSED: [2012-12-16 Sun 20:12]
*** DONE dconf
CLOSED: [2012-12-16 Sun 20:12]
*** TODO empathy
*** TODO eog
*** TODO epiphany
*** TODO evince
*** TODO evolution-data-server
*** TODO folks
*** DONE gcr
CLOSED: [2012-12-16 Sun 20:12]
*** DONE gdk-pixbuf
CLOSED: [2012-12-16 Sun 20:12]
*** TODO gdm
*** TODO geocode-glib
*** TODO gjs
*** DONE glib
CLOSED: [2012-12-16 Sun 20:12]
*** TODO glib-networking
*** TODO glibmm
*** TODO gmime
*** TODO gnome-backgrounds
*** TODO gnome-bluetooth
*** TODO gnome-calculator
*** TODO gnome-contacts
*** TODO gnome-control-center
*** DONE gnome-desktop
CLOSED: [2012-12-16 Sun 20:12]
*** TODO gnome-dictionary
*** TODO gnome-disk-utility
*** TODO gnome-font-viewer
*** TODO gnome-icon-theme
*** TODO gnome-icon-theme-extras
*** TODO gnome-js-common
*** DONE gnome-keyring
CLOSED: [2012-12-16 Sun 20:12]
*** TODO gnome-menus
*** TODO gnome-online-accounts
*** TODO gnome-online-miners
*** TODO gnome-packagekit
*** TODO gnome-screenshot
*** TODO gnome-session
*** TODO gnome-settings-daemon
*** TODO gnome-shell
*** TODO gnome-shell-extensions
*** TODO gnome-system-log
*** TODO gnome-system-monitor
*** TODO gnome-terminal
*** TODO gnome-themes-standard
*** TODO gnome-user-docs
*** TODO gnome-user-share
*** TODO gnome-video-effects
*** TODO gobject-introspection
*** TODO grillo
*** TODO grillo-plugins
*** TODO gsettings-desktop-schemas
*** TODO gssdp
*** TODO gst-plugins-base
*** TODO gst-plugins-good
*** TODO gstreamer
*** DONE gtk+ 2
CLOSED: [2012-12-16 Sun 20:12]
*** DONE gtk+ 3
CLOSED: [2012-12-16 Sun 20:12]
*** TODO gtk-doc
*** TODO gtkmm
*** DONE gtksourceview
CLOSED: [2012-12-16 Sun 20:12]
*** TODO gucharmap
*** TODO gupnp
*** TODO gupnp-igd
*** TODO gvfs
*** DONE json-glib
CLOSED: [2012-12-16 Sun 20:12]
*** TODO libchamplain
*** TODO libcroco
*** TODO libgdata
*** TODO libgee
*** TODO libgnome-keyring
*** TODO libgnomekbd
*** TODO libgsf
*** TODO libgtop
*** TODO libgweather
*** TODO libgxps
*** TODO libnotify
*** TODO libpeas
*** TODO libqmi
*** TODO librsvg
*** TODO libsecret
*** TODO libsigc++
*** TODO libsoup
*** TODO libwnck
*** TODO libzapojit
*** TODO mm-common
*** TODO mousetweaks
*** TODO mutter
*** DONE nautilus
CLOSED: [2012-12-16 Sun 20:12]
*** TODO network-manager-applet
*** DONE pango
CLOSED: [2012-12-16 Sun 20:12]
*** TODO pangomm
*** TODO pygobject
*** TODO rest
*** TODO seed
*** TODO sushi
*** TODO totem
*** TODO totem-pl-parser
*** TODO tracker
*** TODO vala
*** TODO vino
*** TODO vte
*** TODO yelp
*** TODO yelp-tools
*** TODO yelp-xsl
*** TODO zenity
** Apps [1/44] [2%]
*** TODO accerciser
*** TODO aisleriot
*** TODO anjuta
*** TODO bijiben
*** TODO brasero
*** TODO cheese
*** TODO devhelp
*** TODO evolution
*** TODO file-roller
*** TODO five-or-more
*** TODO four-in-a-row
*** TODO gedit
*** DONE glade
CLOSED: [2012-12-16 Sun 20:12]
*** TODO gnome-boxes
*** TODO gnome-chess
*** TODO gnome-clocks
*** TODO gnome-color-manager
*** TODO gnome-devel-docs
*** TODO gnome-documents
*** TODO gnome-getting-started-docs
*** TODO gnome-initial-setup
*** TODO gnome-klotski
*** TODO gnome-mahjongg
*** TODO gnome-maps
*** TODO gnome-mines
*** TODO gnome-music
*** TODO gnome-nettool
*** TODO gnome-nibbles
*** TODO gnome-photos
*** TODO gnome-robots
*** TODO gnome-sudoku
*** TODO gnome-tetravex
*** TODO gnome-weather
*** TODO iagno
*** TODO lightsoff
*** TODO nautilus-sendto
*** TODO nemiver
*** TODO orca
*** TODO quadrapassel
*** TODO rygel
*** TODO seahorse
*** TODO swell-foop
*** TODO tali
*** TODO vinagre
** Other
*** DONE gconf
CLOSED: [2012-12-16 Sun 20:12]
*** DONE gnome-vfs
CLOSED: [2012-12-16 Sun 20:12]
*** DONE gnumeric
CLOSED: [2012-12-16 Sun 20:12]
*** DEFERRED gtk+ 1
would be useful as a dependency for old packages
*** DONE intltool
CLOSED: [2012-12-16 Sun 20:12]
*** DONE libbonobo
CLOSED: [2012-12-16 Sun 20:12]
*** DONE libbonoboui
CLOSED: [2012-12-16 Sun 20:12]
*** DONE libglade
CLOSED: [2012-12-16 Sun 20:12]
*** DONE libgnome
CLOSED: [2012-12-16 Sun 20:12]
*** DONE libgnomecanvas
CLOSED: [2012-12-16 Sun 20:12]
* GNUstep packages [22/28] [78%]
** DONE enterprise
CLOSED: [2012-12-16 Sun 20:12]
** TODO examples
** DONE gnumail
CLOSED: [2013-04-10 Wed 22:20]
** DONE gnustep-backend
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnustep-base
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnustep-corebase
CLOSED: [2012-12-16 Sun 20:12]
** TODO gnustep-examples
** DONE gnustep-gui
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE gnustep-guile
CLOSED: [2012-12-16 Sun 20:16]
*** unsupported by upstream
** DONE gnustep-libobjc2
CLOSED: [2013-08-17 Sat 16:51]
** DONE gnustep-make
CLOSED: [2012-12-16 Sun 20:12]
** DONE gnustep-ppd
CLOSED: [2012-12-16 Sun 20:12]
** DONE gorm
CLOSED: [2012-12-16 Sun 20:12]
** DONE gworkspace
CLOSED: [2012-12-16 Sun 20:12]
** TODO jigs
** IGNORE nib2gmodel
CLOSED: [2012-12-16 Sun 20:16]
*** obsolete
** IGNORE openstep-2gnu-converter
CLOSED: [2012-12-16 Sun 20:16]
*** obsolete
** DONE pantomime
CLOSED: [2013-04-10 Wed 22:08]
** DONE performance
CLOSED: [2012-12-16 Sun 20:12]
** DONE project-center
CLOSED: [2012-12-16 Sun 20:12]
** DONE renaissance
CLOSED: [2012-12-16 Sun 20:12]
** TODO rpmviewer
** DONE sqlclient
CLOSED: [2012-12-16 Sun 20:12]
** IGNORE steptalk
CLOSED: [2012-12-16 Sun 20:16]
*** unsupported by upstream
** TODO system-preferences
** DONE webserver
CLOSED: [2012-12-16 Sun 20:12]
** DONE webservices
CLOSED: [2012-12-16 Sun 20:12]
** TODO wrappers
# -*- org -*-
#+TITLE: BioSRC TODO List
#+AUTHOR: Brandon Invergo
#+EMAIL: brandon@invergo.net
#+DESCRIPTION: This file tracks all of the TODO items for BioSRC, primarily for
#+DESCRIPTION: adding new packages but also for improvements to the system.
#+TODO: TODO CANTADD ADDDEPS PROBLEM | DONE
* System
** DONE Add rule for checking for existence of upstream updates
CLOSED: [2014-05-21 Wed 11:58]
* Packages
** bio [53/134]
*** CANTADD abyss
http://www.bcgsc.ca/platform/bioinfo/software/abyss
Has contradictory license terms: "GPL for non-commercial use"
*** TODO arachne
[[http://www.broadinstitute.org/crd/wiki/index.php/Arachne_Main_Page]]
*** TODO awty
http://ceb.scs.fsu.edu/awty
*** TODO axtchain
http://genomewiki.ucsc.edu/index.php/The_source_tree
http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads
http://genomewiki.cse.ucsc.edu/index.php/Minimal_Steps_For_LiftOver
The axtChain program is in the kent source tree:
/kent/src/hg/mouseStuff/axtChain
*** DONE bamtools
CLOSED: [2014-03-13 Thu 21:30]
*** TODO bcftools
http://sourceforge.net/projects/samtools/files/samtools/1.0/
https://github.com/samtools/bcftools
*** TODO beast
https://code.google.com/p/beast-mcmc/
*** TODO bedops
https://github.com/bedops/bedops
*** DONE bedtools
CLOSED: [2014-02-27 Thu 22:08]
*** DONE bfast
CLOSED: [2014-03-13 Thu 21:38]
*** DONE bismark
CLOSED: [2014-03-13 Thu 21:45]
*** CANTADD blat
Academic-use-only license
*** DONE bowtie
CLOSED: [2014-02-27 Thu 22:32]
*** DONE breakway
CLOSED: [2014-03-13 Thu 22:02]
*** DONE bwa
CLOSED: [2014-04-07 Mon 15:31]
*** TODO cafe
http://sites.bio.indiana.edu/~hahnlab/Software.html
*** TODO ccat
http://cmb.gis.a-star.edu.sg/ChIPSeq/paperCCAT.htm
*** DONE cd-hit
CLOSED: [2014-07-21 Mon 18:12]
*** TODO cegma
http://korflab.ucdavis.edu/Datasets/cegma/
*** DONE clustal-omega
CLOSED: [2014-02-24 Mon 10:34]
*** DONE clustalw
CLOSED: [2014-02-24 Mon 10:34]
*** TODO consed
http://www.phrap.org/phredphrapconsed.html#block_consed
*** TODO coseg
http://www.repeatmasker.org/COSEGDownload.html
*** DONE csblast
CLOSED: [2014-07-17 Thu 15:53]
*** DONE cufflinks
CLOSED: [2014-02-27 Thu 23:18]
*** TODO cutadapt
https://code.google.com/p/cutadapt/
*** DONE dnaa
CLOSED: [2014-04-07 Mon 17:00]
*** TODO dnasp
http://www.ub.edu/dnasp/
*** TODO dustmasker
https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/app/dustmasker
*** DONE e-pcr
CLOSED: [2014-04-08 Tue 15:10]
*** PROBLEM eautils
https://code.google.com/p/ea-utils/
Uses Google Drive to distribute files, so no direct download link
Use SVN checkout (no tags available for releases)
*** DONE emboss
CLOSED: [2014-02-24 Mon 14:40]
*** TODO eponine
https://www.sanger.ac.uk/resources/software/eponine/
*** TODO exonerate
https://www.ebi.ac.uk/~guy/exonerate/
*** TODO fastcodeml
*** TODO fastqc
http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
GPL
Check if can be built without GUI
*** DONE fasttree
CLOSED: [2014-02-24 Mon 15:08]
*** DONE fastx-toolkit
CLOSED: [2014-02-28 Fri 10:40]
*** CANTADD foldx
proprietary; no source or executable freely available
*** DONE fsa
CLOSED: [2014-02-24 Mon 15:22]
*** TODO fundi
*** TODO gphocs
http://compgen.bscb.cornell.edu/GPhoCS/
*** TODO gatk
https://www.broadinstitute.org/gatk/
*** TODO garli
https://www.nescent.org/wg_garli/Main_Page
*** CANTADD gblocks
Proprietary (no source, no license)
*** TODO glfprogs
http://maq.sourceforge.net/glfProgs.shtml
*** TODO hapsembler
http://compbio.cs.toronto.edu/hapsembler/
*** DONE hmmer
CLOSED: [2014-02-19 Wed 20:15]
*** DONE hyphy
CLOSED: [2014-03-03 Mon 16:12]
*** TODO interproscan
https://code.google.com/p/interproscan/
Apache license
*** TODO ispcr
http://users.soe.ucsc.edu/~kent/src/
in-silico pcr
*** CANTADD iupred
proprietary
*** DONE jellyfish
CLOSED: [2014-05-23 Fri 18:15]
http://www.genome.umd.edu/jellyfish.html
*** TODO jmodeltest2
https://code.google.com/p/jmodeltest2/
*** DONE kraken
CLOSED: [2014-05-23 Fri 18:34]
http://ccb.jhu.edu/software/kraken/
*** TODO lastz
http://www.bx.psu.edu/~rsharris/lastz/
*** DONE macs
CLOSED: [2014-03-05 Wed 22:19]
*** DONE mafft
CLOSED: [2014-02-24 Mon 16:24]
*** TODO maq
http://maq.sourceforge.net/maq-man.shtml
*** CANTADD mega
Proprietary license (and not available for GNU/Linux?)
*** DONE melting
CLOSED: [2014-02-19 Wed 20:15]
*** CANTADD meme
http://meme.ebi.edu.au/meme/intro.html
Restrictive (academic-only) license
*** CANTADD modeller
proprietary
*** CANTADD modpipe
free software, but has a hard dependency on Modeller
*** TODO monocle
http://monocle-bio.sourceforge.net/
*** DONE moods
CLOSED: [2014-03-05 Wed 22:49]
*** DONE mrbayes
CLOSED: [2014-03-06 Thu 20:21]
*** TODO mrfast
http://sourceforge.net/projects/mrfast/
*** TODO mrsfast
http://mrsfast.sourceforge.net/Home
*** TODO ms
http://home.uchicago.edu/~rhudson1/source/mksamples.html
*** TODO multiz
http://www.bx.psu.edu/miller_lab/
*** DONE mummer
CLOSED: [2014-04-07 Mon 16:01]
*** CANTADD muscle
proprietary (no license available)
*** DONE ncbi-blast
CLOSED: [2014-02-24 Mon 10:34]
*** DONE newick-utils
CLOSED: [2014-02-24 Mon 11:03]
*** DONE oma
CLOSED: [2014-02-19 Wed 20:49]
*** ADDDEPS pagan-msa
boost
*** CANTADD paml
restrictive academic-use-only clause
*** CANTADD paup
proprietary?
http://paup.csit.fsu.edu/
*** ADDDEPS pfamscan
*** TODO phast
http://compgen.bscb.cornell.edu/phast/
*** TODO phrap
http://www.phrap.org/phredphrapconsed.html#block_phrap
*** TODO phred
http://www.phrap.org/phredphrapconsed.html#block_phred
*** CANTADD phylip
Restrictive license (can't use commercially)
*** TODO picard
http://picard.sourceforge.net/
*** TODO pinstripe
http://pinstripe.matticklab.com/
*** DONE phyml
CLOSED: [2014-02-24 Mon 11:35]
*** DONE primer3
CLOSED: [2014-04-07 Mon 15:45]
*** DONE prank-msa
CLOSED: [2014-02-24 Mon 11:23]
*** PROBLEM prottest
https://code.google.com/p/prottest3/
Uses Google Drive to distribute files, so no direct download.
Use Hg checkout?
*** DONE provean
CLOSED: [2014-07-22 Tue 12:28]
http://provean.jcvi.org/index.php
GPLv3
*** DONE pscan
CLOSED: [2014-05-23 Fri 18:47]
*** TODO psmc
*** DONE qmmraxml
CLOSED: [2014-02-26 Wed 22:57]
*** DONE quake
CLOSED: [2014-04-07 Mon 13:44]
*** TODO quicktree
https://www.sanger.ac.uk/resources/software/quicktree/
*** DONE raxml
CLOSED: [2014-02-19 Wed 22:25]
*** TODO repeatmasker
http://www.repeatmasker.org/
*** DONE reapr
CLOSED: [2014-04-07 Mon 15:24]
*** CANTADD rnaprofile
No license
*** DONE rnaz
CLOSED: [2014-04-07 Mon 15:52]
*** DONE samtoools
CLOSED: [2014-02-27 Thu 23:11]
*** DONE seqsuite
CLOSED: [2014-02-24 Mon 16:25]
*** DONE seqtk
CLOSED: [2014-06-23 Mon 22:43]
https://github.com/lh3/seqtk
*** CANTADD sift
Restrictive license (non-commercial)
*** TODO sff2fastq
https://github.com/indraniel/sff2fastq
no official release...
*** TODO slimcodeml
*** DONE slimsuite
CLOSED: [2014-09-19 Fri 14:35]
*** DONE smalt
CLOSED: [2014-06-26 Thu 19:20]
https://www.sanger.ac.uk/resources/software/smalt/
*** TODO snpeff
http://sourceforge.net/projects/snpeff/
*** DONE snpomatic
CLOSED: [2014-04-07 Mon 14:17]
*** TODO soapdenovo
http://soap.genomics.org.cn/
*** TODO soapaligner/soap2
http://soap.genomics.org.cn/
*** TODO soapsplice
http://soap.genomics.org.cn/
*** TODO soapsnp
http://soap.genomics.org.cn/
*** TODO soapindel
http://soap.genomics.org.cn/
*** TODO soapsv
http://soap.genomics.org.cn/
*** TODO sra-toolkit
https://www.ncbi.nlm.nih.gov/Traces/sra/?view=software
Massive pain to build...try again some other time
*** TODO srma
http://sourceforge.net/projects/srma/
*** TODO ssaha2
https://www.sanger.ac.uk/resources/software/ssaha2/
*** TODO stampy
*** DONE t-coffee
CLOSED: [2014-02-19 Wed 20:16]
*** DONE tabix
CLOSED: [2014-04-07 Mon 14:08]
*** TODO tdg09
https://github.com/tamuri/tdg09
*** TODO tdg12
https://github.com/tamuri/tdg12
*** TODO tophat
http://tophat.cbcb.umd.edu/
Boost, probably, like cufflinks
*** DONE treebest
CLOSED: [2014-04-02 Wed 14:02]
*** TODO treesoft
http://sourceforge.net/projects/treesoft/
*** DONE trimal
CLOSED: [2014-02-19 Wed 21:08]
*** TODO trinity
http://trinityrnaseq.sourceforge.net/
BSD
*** TODO velvet
https://www.ebi.ac.uk/~zerbino/velvet/
*** TODO viennarna
http://www.tbi.univie.ac.at/~ronny/RNA/
*** DONE weeder
CLOSED: [2014-05-23 Fri 18:57]
GPLv3
*** DONE weederh
CLOSED: [2014-05-23 Fri 19:09]
** dev [3/7]
*** TODO apache-ant
dep of melting
*** DONE gcc
CLOSED: [2014-05-14 Wed 12:38]
*** TODO lua
*** TODO perl
*** DONE python
CLOSED: [2014-03-03 Mon 14:18]
*** DONE python2
CLOSED: [2014-03-03 Mon 14:47]
*** TODO ruby
** libs [20/33]
*** DONE bambamc
CLOSED: [2014-06-26 Thu 19:18]
https://github.com/gt1/bambamc
*** DONE glpk
CLOSED: [2014-02-19 Wed 20:17]
*** TODO gmp
*** DONE gsl
CLOSED: [2014-02-19 Wed 20:17]
*** DONE beagle-lib
CLOSED: [2014-03-06 Thu 20:06]
*** TODO boost
dep of pagan-msa
*** DONE eigen
CLOSED: [2014-02-27 Thu 23:11]
*** DONE gdbm
CLOSED: [2014-03-05 Wed 15:45]
*** DONE htslib
CLOSED: [2014-09-19 Fri 14:34]
*** DONE libgtextutils
CLOSED: [2014-02-28 Fri 10:41]
*** TODO mpc
*** TODO mpfr
*** DONE perl-bioperl
CLOSED: [2014-02-19 Wed 20:17]
*** TODO perl-ensembl
*** TODO perl-moose [0/22]
pre-req for pfamscan
**** TODO perl-class-load
**** TODO perl-class-load-xs
**** TODO perl-data-optlist
**** TODO perl-devel-globaldestruction
**** TODO perl-dist-checkconflicts
**** TODO perl-eval-closure
**** TODO perl-list-moreutils
**** TODO perl-mro-compat
**** TODO perl-package-deprecationmanager
**** TODO perl-package-stash
**** TODO perl-package-stash-xs
**** TODO perl-params-util
**** TODO perl-sub-exporter
**** TODO perl-sub-name
**** TODO perl-task-weaken
**** TODO perl-test-checkdeps
**** TODO perl-try-tiny
**** TODO perl-devel-stacktrace
**** TODO perl-dist-checkconflicts
**** TODO perl-test-fatal
**** TODO perl-test-requires
**** TODO perl-test-without-module
*** DONE python-biopython
CLOSED: [2014-02-19 Wed 20:17]
*** DONE python-dateutil
CLOSED: [2014-05-14 Wed 11:27]
*** DONE python-htseq
CLOSED: [2014-02-28 Fri 11:01]
*** TODO python-matplotlib
*** DONE python-networkx
CLOSED: [2014-03-06 Thu 10:50]
*** TODO python-nose
*** DONE python-numpy
CLOSED: [2014-03-05 Wed 15:34]
*** DONE python-pandas
CLOSED: [2014-05-14 Wed 11:26]
*** TODO python-pybedtools
https://pypi.python.org/pypi/pybedtools
*** TODO python-pycogent
*** TODO python-scikit-learn
*** DONE python-scipy
CLOSED: [2014-03-05 Wed 15:34]
*** DONE python-setuptools
CLOSED: [2014-04-23 Wed 17:09]
*** DONE python-sqlalchemy
CLOSED: [2014-04-23 Wed 17:09]
*** TODO python-sympy
*** TODO r-cummerbund
http://compbio.mit.edu/cummeRbund/
*** DONE seqan
CLOSED: [2014-06-26 Thu 23:04]
*** DONE sparsehash
CLOSED: [2014-07-17 Thu 14:14]
** tools [7/8]
*** DONE datamash
CLOSED: [2014-05-21 Wed 22:46]
*** TODO ipython
*** DONE mcsim
CLOSED: [2014-02-19 Wed 20:18]
*** DONE parallel
CLOSED: [2014-02-26 Wed 22:31]
*** DONE plotutils
CLOSED: [2014-02-19 Wed 20:18]
*** DONE units
CLOSED: [2014-02-19 Wed 20:18]
*** DONE wdiff
CLOSED: [2014-02-19 Wed 20:18]
*** DONE zeptodb
CLOSED: [2014-02-26 Wed 22:31]
|