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  • Committer: Chris Rogers
  • Date: 2014-05-20 09:30:14 UTC
  • Revision ID: chris.rogers@stfc.ac.uk-20140520093014-he43dmwsewve273q
Fix uninitialised values

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Software/analysis/reconstruct_emr.py
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        pass
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    os.symlink(configuration_file, "param.conf")
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def link_spec(spectrum_file):
 
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    try:
 
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        os.remove("tof_spectrum.events.tmp")
 
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    except OSError:
 
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        pass
 
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    os.symlink(spectrum_file, "tof_spectrum.events.tmp")
 
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def run_proc(args):
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    print "Running", " ".join(args)
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    proc = subprocess.Popen(args)
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    root_to_json = os.path.expandvars("${MAUS_ROOT_DIR}/bin/utilities/root_to_json.py")
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    convert_exe = emr_directory+"mc/conversion/bin/emrmcdataproc"
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    digits_exe = emr_directory+"mc/digitization/bin/emrmcdigiproc"
 
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    recon_exe = emr_directory+"mc/reconstruction/bin/emrreconproc"
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    calibration = emr_directory+"run/calibmcdata.txt"
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    mc_root_out = "data/maus_mc_output.root"
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    mc_json_out = "data/maus_mc_output.json"
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    convert_out = "data/mc_conversion.root"
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    digits_out = "data/digits.root"
 
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    recon_out = "data/recon.root"
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    link_conf(emr_directory+"run/"+"param.conf.beam")
 
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    link_conf(emr_directory+"run/param.conf.beam")
 
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    link_spec(emr_directory+"run/tof_spectrum.events.tmp")
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    run_proc([root_to_json, "--input_root_file_name", mc_root_out, "--output_json_file_name", mc_json_out])
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    run_proc([convert_exe, mc_json_out, convert_out])
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    run_proc([digits_exe, convert_out, digits_out, "-1", calibration])
 
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    run_proc([recon_exe, digits_out, recon_out])
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if __name__ == "__main__":
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    main()