~fluidity-core/fluidity/dev-trunk : changes

~fluidity-core/fluidity/dev-trunk » Changes from revision 4327

From Revision 4327 to 4308

Rev	Summary	Authors	Date
4327	Expanding variables in the test XML command section as in so... Expanding variables in the test XML command section as in some cases the variable assignment failed leading to a test failure.	Tim Greaves	9 years ago
4326	Mea culpa; correcting an autoconf syntax error in my previou... Mea culpa; correcting an autoconf syntax error in my previous commit.	Tim Greaves	9 years ago
4325	The current hack for building on ARCHER only works on the ma... The current hack for building on ARCHER only works on the master node; rather than extending the hack to work on the slave nodes (which have far more generic hostnames) this changes the behaviour to require a variable to be set by the user, ARCHER.	Tim Greaves	9 years ago
4324	As per discussion at: As per discussion at: http://lists.gnu.org/archive/html/bug-libtool/2012-03/msg00004.html libtool generation breaks for wrapped gfortran >=4.6 in some cases. This is a different fix to the one proposed in the link above but seems to work. I'm applying this directly to Fluidity to get a quick fix for Archer but will also propose it as a fix to spud.	Tim Greaves	10 years ago
4323	Obvious copy and paste bug. Obvious copy and paste bug. I think this may fix the intel flredecomp bug for the cx1 tests, as I get the following backtrace (only for non-debugging build): gdb) bt #0 0x0000000000659f0b in state_module_mp_aliased_scalar_ () #1 0x000000000050950c in checkpoint_mp_checkpoint_fields_ () #2 0x00000000005072cb in checkpoint_mp_checkpoint_state_ () #3 0x0000000000507116 in checkpoint_mp_checkpoint_simulation_ () #4 0x0000000000503c5e in flredecomp () #5 0x000000000050419b in main ()	Stephan Kramer	10 years ago
4322	BUG FIX: p%mesh should be p_theta%mesh. This was only a pro... BUG FIX: p%mesh should be p_theta%mesh. This was only a problem when using the viscous fs while testing the divergence using cv. This is tested but apparently not in parallel when you can't get away with using the wrong global node numbering.	Cian Wilson	10 years ago
4321	Relaxing tolerances slightly after consultation with David, ... Relaxing tolerances slightly after consultation with David, in response to a slight change in the test result on Ubuntu Trusty. Note that this may be a change from gmsh - the test passed fine on 2.5/2.6, failed intermittently with 2.8.3, and fails consistently with 2.8.4.	Tim Greaves	10 years ago
4320	Speed up of vtudiff for vtus with multiple fields. Speed up of vtudiff for vtus with multiple fields. This is done by only setting up the VTK probe once instead of once per field. It does not change anything in the way fields are probed. This commit also enables the diffing of cell-based (P0) fields in the vtu (only works if they are on the same mesh). There is also a little bit of cleaning up in vtktools: * removing the option to call vtktools as a main: this really doesn't make sense and should be in a separate script * removing the "field manipulation" methods. These were basically vectorial operations on fields but implemented in a rather inefficient way. I see no reason to not simply use numpy vector operations for that, so instead of: vtu.SubFieldFromField("fieldName", array, "newFieldName") just do: field = vtu.GetField("fieldName") vtu.AddField("newFieldName", field-array)	Stephan Kramer	10 years ago
4319	Bug-fix: fixes bottom friction term for shallow water equati... Bug-fix: fixes bottom friction term for shallow water equations with CG velocity.	Stephan Kramer	10 years ago
4318	Reran a more recent version of autoconf because older versio... Reran a more recent version of autoconf because older versions have a buggy AC_COMPUTE_INT macro.	Gerard Gorman	10 years ago
4317	bugfix: fixes a long standing issue where incorrect parts we... bugfix: fixes a long standing issue where incorrect parts were generated for include dirs when libadjoint was not installed.	Gerard Gorman	10 years ago
4316	Patches to build to support ARCHER: patches include path fro... Patches to build to support ARCHER: patches include path from cray-petsc (have also reported bug to cray); extend hector hack for archer that forces libspud to be built statically.	Gerard Gorman	10 years ago
4315	Fixing several bugs in lagrangian detectors: Fixing several bugs in lagrangian detectors: * Bug #1262890: Single lagrangian detectors are initialised with wrong names, causing detector I/O to fail in parallel * Bug #1260019: Prevent buffer corruption in exchange_detectors through use of multiple send/receive buffers * Re-initialisation of detector names from checkpoint	Michael Lange	10 years ago
4314	Modify this test suc htaht results are consistent with and w... Modify this test suc htaht results are consistent with and without debugging enabled (and also such that it passes on red hat). Thanks for Stephan and Tim for input.	Rhodri Davies	10 years ago
4313	relaxing some test tolerances to pass since the upgrade to P... relaxing some test tolerances to pass since the upgrade to Petsc 3.4.	j.bull08 at ac	10 years ago
4312	Correcting the fix for the gmsh failures on trusty. Tempora... Correcting the fix for the gmsh failures on trusty. Temporary: should be reverted if/when gmsh responds.	Cian Wilson	10 years ago
4311	Reverting 4310 as it had the unintended effect of breaking t... Reverting 4310 as it had the unintended effect of breaking trunk on precise.	Tim Greaves	10 years ago
4310	Change only in test: On Cian's advice, until the gmsh team r... Change only in test: On Cian's advice, until the gmsh team respond with a more useful fix, altering the geo file slightly to get the test to pass here. This should be reverted when gmsh is fixed.	Tim Greaves	10 years ago
4309	Commit in test only: Minor tolerance relaxation. Commit in test only: Minor tolerance relaxation.	Tim Greaves	10 years ago
4308	Change in tests only: typo in previous commit set a ridiculo... Change in tests only: typo in previous commit set a ridiculous test value.	Tim Greaves	10 years ago

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