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- Committer: Simon Mouradian
- Date: 2012-05-30 09:08:23 UTC
- mfrom: (3520.32.274 fluidity)
- Revision ID: simon.mouradian06@imperial.ac.uk-20120530090823-pq0fgemjpqn72j8d
merge from lp:fluidity
- files added:
- manual/fluidity_logo.svg
- tests/3material-droplet-p1dgp2-test-cty-cv-rhop1dg
- tests/3material-droplet-p1dgp2-test-cty-cv-rhop1dg-3d
- tests/3material-droplet-p1dgp2-test-cty-cv-rhop1dg/3material-droplet-p1dgp2-test-cty-cv-rhop1dg.flml
- tests/column-parallel
- tests/column-parallel/src
- files modified:
- assemble/Diagnostic_Fields_Matrices.F90
added
removed
tests/column-parallel/fluidity.log-1
1
Calling fluids from mainfl
2
Checking momentum discretisation options
3
Finished checking momentum discretisation options
4
Options sanity check successful
5
In populate_state
6
Using the new makeeelist
7
In read_halos_mesh
8
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
9
Halo nodes are consistent with trailing receive ordering
10
Creating universal numbering for a trailing receives halo
11
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
12
Halo nodes are consistent with trailing receive ordering
13
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
14
Halo nodes are consistent with trailing receive ordering
15
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
16
Halo nodes are consistent with trailing receive ordering
17
Checking nodes in halo CoordinateMeshLevel2Halo for consistency with trailing receive ordering
18
Halo nodes are consistent with trailing receive ordering
19
Creating universal numbering for a trailing receives halo
20
Checking nodes in halo CoordinateMeshLevel2Halo for consistency with trailing receive ordering
21
Halo nodes are consistent with trailing receive ordering
22
Checking nodes in halo CoordinateMeshLevel2Halo for consistency with trailing receive ordering
23
Halo nodes are consistent with trailing receive ordering
24
Checking nodes in halo CoordinateMeshLevel2Halo for consistency with trailing receive ordering
25
Halo nodes are consistent with trailing receive ordering
26
In derive_maximal_element_halo
27
Checking nodes in halo CoordinateMeshLevel2Halo for consistency with trailing receive ordering
28
Halo nodes are consistent with trailing receive ordering
29
Checking nodes in halo CoordinateMeshMaximalElementHalo for consistency with trailing receive ordering
30
Halo nodes are consistent with trailing receive ordering
31
Creating universal numbering for a trailing receives halo
32
Checking nodes in halo CoordinateMeshMaximalElementHalo for consistency with trailing receive ordering
33
Halo nodes are consistent with trailing receive ordering
34
Checking nodes in halo CoordinateMeshMaximalElementHalo for consistency with trailing receive ordering
35
Halo nodes are consistent with trailing receive ordering
36
Checking nodes in halo CoordinateMeshMaximalElementHalo for consistency with trailing receive ordering
37
Halo nodes are consistent with trailing receive ordering
38
Exiting derive_maximal_element_halo
39
Exiting read_halos_mesh
40
Creating universal numbering for a trailing receives halo
41
Checking nodes in halo CoordinateMeshMaximalElementHaloDG for consistency with trailing receive ordering
42
Halo nodes are consistent with trailing receive ordering
43
Checking nodes in halo CoordinateMeshMaximalElementHaloDG for consistency with trailing receive ordering
44
Halo nodes are consistent with trailing receive ordering
45
Checking nodes in halo CoordinateMeshMaximalElementHaloDG for consistency with trailing receive ordering
46
Halo nodes are consistent with trailing receive ordering
47
Creating universal numbering for a trailing receives halo
48
Checking nodes in halo CoordinateMeshMaximalElementHaloDG for consistency with trailing receive ordering
49
Halo nodes are consistent with trailing receive ordering
50
Checking nodes in halo CoordinateMeshMaximalElementHaloDG for consistency with trailing receive ordering
51
Halo nodes are consistent with trailing receive ordering
52
Checking nodes in halo CoordinateMeshMaximalElementHaloDG for consistency with trailing receive ordering
53
Halo nodes are consistent with trailing receive ordering
54
Using the new makeeelist
55
In merge_surface_ids
56
In derive_maximal_surface_element_halo
57
Checking nodes in halo CoordinateMeshMaximalElementHalo for consistency with trailing receive ordering
58
Halo nodes are consistent with trailing receive ordering
59
Exiting derive_maximal_surface_element_halo
60
Exiting merge_surface_ids
61
In allocate_and_insert_scalar_field, field is: Density
62
Is field prognostic? F
63
Is field prescribed? F
64
Is field constant? F
65
Is field diagnostic? T
66
In allocate_and_insert_scalar_field, field is: Temperature
67
Is field prognostic? T
68
Is field prescribed? F
69
Is field constant? F
70
Is field diagnostic? F
71
In allocate_and_insert_scalar_field, field is: Salinity
72
Is field prognostic? T
73
Is field prescribed? F
74
Is field constant? F
75
Is field diagnostic? F
76
In allocate_and_insert_scalar_field, field is: PerturbationDensity
77
Is field prognostic? F
78
Is field prescribed? F
79
Is field constant? F
80
Is field diagnostic? T
81
In allocate_and_insert_scalar_field, field is: CFLNumber
82
Is field prognostic? F
83
Is field prescribed? F
84
Is field constant? F
85
Is field diagnostic? T
86
In allocate_and_insert_scalar_field, field is: DistanceToTop
87
Is field prognostic? F
88
Is field prescribed? T
89
Is field constant? F
90
Is field diagnostic? F
91
In allocate_and_insert_scalar_field, field is: DistanceToBottom
92
Is field prognostic? F
93
Is field prescribed? T
94
Is field constant? F
95
Is field diagnostic? F
96
In allocate_and_insert_vector_field, field is: Velocity
97
Is field prognostic? T
98
Is field prescribed? F
99
Is field constant? F
100
Is field diagnostic? F
101
In allocate_and_insert_vector_field, field is: VelocityAbsorption
102
Is field prognostic? F
103
Is field prescribed? T
104
Is field constant? T
105
Is field diagnostic? F
106
In allocate_and_insert_tensor_field, field is: Viscosity
107
Is field prescribed? F
108
Is field diagnostic? T
109
Is field constant? F
110
In allocate_and_insert_vector_field, field is: GravityDirection
111
Is field prognostic? F
112
Is field prescribed? T
113
Is field constant? T
114
Is field diagnostic? F
115
In allocate_and_insert_scalar_field, field is: GLSTurbulentKineticEnergy
116
Is field prognostic? T
117
Is field prescribed? F
118
Is field constant? F
119
Is field diagnostic? F
120
In allocate_and_insert_scalar_field, field is: GLSTurbulentKineticEnergySource
121
Is field prognostic? F
122
Is field prescribed? F
123
Is field constant? F
124
Is field diagnostic? T
125
In allocate_and_insert_scalar_field, field is: GLSTurbulentKineticEnergyAbsorption
126
Is field prognostic? F
127
Is field prescribed? F
128
Is field constant? F
129
Is field diagnostic? T
130
In allocate_and_insert_tensor_field, field is: GLSTurbulentKineticEnergyDiffusivity
131
Is field prescribed? F
132
Is field diagnostic? T
133
Is field constant? F
134
In allocate_and_insert_scalar_field, field is: GLSGenericSecondQuantity
135
Is field prognostic? T
136
Is field prescribed? F
137
Is field constant? F
138
Is field diagnostic? F
139
In allocate_and_insert_scalar_field, field is: GLSGenericSecondQuantitySource
140
Is field prognostic? F
141
Is field prescribed? F
142
Is field constant? F
143
Is field diagnostic? T
144
In allocate_and_insert_scalar_field, field is: GLSGenericSecondQuantityAbsorption
145
Is field prognostic? F
146
Is field prescribed? F
147
Is field constant? F
148
Is field diagnostic? T
149
In allocate_and_insert_tensor_field, field is: GLSGenericSecondQuantityDiffusivity
150
Is field prescribed? F
151
Is field diagnostic? T
152
Is field constant? F
153
In allocate_and_insert_scalar_field, field is: GLSLengthScale
154
Is field prognostic? F
155
Is field prescribed? F
156
Is field constant? F
157
Is field diagnostic? T
158
In allocate_and_insert_scalar_field, field is: GLSBuoyancyFrequency
159
Is field prognostic? F
160
Is field prescribed? F
161
Is field constant? F
162
Is field diagnostic? T
163
In allocate_and_insert_scalar_field, field is: GLSVelocityShear
164
Is field prognostic? F
165
Is field prescribed? F
166
Is field constant? F
167
Is field diagnostic? T
168
In allocate_and_insert_scalar_field, field is: GLSShearProduction
169
Is field prognostic? F
170
Is field prescribed? F
171
Is field constant? F
172
Is field diagnostic? T
173
In allocate_and_insert_scalar_field, field is: GLSBuoyancyProduction
174
Is field prognostic? F
175
Is field prescribed? F
176
Is field constant? F
177
Is field diagnostic? T
178
In allocate_and_insert_scalar_field, field is: GLSDissipationEpsilon
179
Is field prognostic? F
180
Is field prescribed? F
181
Is field constant? F
182
Is field diagnostic? T
183
In allocate_and_insert_scalar_field, field is: GLSStabilityFunctionSM
184
Is field prognostic? F
185
Is field prescribed? F
186
Is field constant? F
187
Is field diagnostic? T
188
In allocate_and_insert_scalar_field, field is: GLSStabilityFunctionSH
189
Is field prognostic? F
190
Is field prescribed? F
191
Is field constant? F
192
Is field diagnostic? T
193
In allocate_and_insert_scalar_field, field is: GLSSource1
194
Is field prognostic? F
195
Is field prescribed? F
196
Is field constant? F
197
Is field diagnostic? T
198
In allocate_and_insert_scalar_field, field is: GLSSource2
199
Is field prognostic? F
200
Is field prescribed? F
201
Is field constant? F
202
Is field diagnostic? T
203
In allocate_and_insert_scalar_field, field is: GLSAbsorption1
204
Is field prognostic? F
205
Is field prescribed? F
206
Is field constant? F
207
Is field diagnostic? T
208
In allocate_and_insert_scalar_field, field is: GLSAbsorption2
209
Is field prognostic? F
210
Is field prescribed? F
211
Is field constant? F
212
Is field diagnostic? T
213
In allocate_and_insert_scalar_field, field is: GLSWallFunction
214
Is field prognostic? F
215
Is field prescribed? F
216
Is field constant? F
217
Is field diagnostic? T
218
In allocate_and_insert_scalar_field, field is: GLSVerticalViscosity
219
Is field prognostic? F
220
Is field prescribed? F
221
Is field constant? F
222
Is field diagnostic? T
223
In allocate_and_insert_scalar_field, field is: GLSVerticalDiffusivity
224
Is field prognostic? F
225
Is field prescribed? F
226
Is field constant? F
227
Is field diagnostic? T
228
In allocate_and_insert_tensor_field, field is: GLSBackgroundViscosity
229
Is field prescribed? T
230
Is field diagnostic? F
231
Is field constant? F
232
In allocate_and_insert_tensor_field, field is: GLSBackgroundDiffusivity
233
Is field prescribed? T
234
Is field diagnostic? F
235
Is field constant? F
236
In allocate_and_insert_tensor_field, field is: GLSEddyViscosityKM
237
Is field prescribed? F
238
Is field diagnostic? T
239
Is field constant? F
240
In allocate_and_insert_tensor_field, field is: GLSEddyDiffusivityKH
241
Is field prescribed? F
242
Is field diagnostic? T
243
Is field constant? F
244
In initialise_prognostic_fields
245
In set_prescribed_field_values
246
In populate_boundary_conditions
247
Initialising GLS stable boundaries
248
In set_boundary_conditions
249
In set_dirichlet_consistent
250
Exiting populate_state
251
In allocate_and_insert_auxilliary_fields
252
In enforce_discrete_properties
253
Exiting enforce_discrete_properties
254
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
255
% Some quantities associated with the initial set-up of this problem. %
256
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
257
-
258
The time step (DT) is: 15.000000000000000
259
The end time (LTIME) is set to: 45.000000000000000
260
This corresponds to this many time steps in simulation: 3.0000000000000000
261
-
262
The maximum volume of element in the mesh is: 15000.000000000187
263
The minimum volume of element in the mesh is: 14999.999999999809
264
The ratio of max to min volumes is: 1.0000000000000253
265
The following material phases and their contents are in existence
266
State: Fluid
267
Meshes:
268
+CoordinateMesh
269
+VelocityMesh
270
+PressureMesh
271
Halos:
272
none
273
Scalar fields:
274
+Density (Density) on VelocityMesh
275
+Temperature (Temperature) on VelocityMesh
276
+Salinity (Salinity) on VelocityMesh
277
+PerturbationDensity (PerturbationDensity) on VelocityMesh
278
+CFLNumber (CFLNumber) on VelocityMesh
279
+DistanceToTop (DistanceToTop) on VelocityMesh
280
+DistanceToBottom (DistanceToBottom) on VelocityMesh
281
+GLSTurbulentKineticEnergy (GLSTurbulentKineticEnergy) on VelocityMesh
282
+GLSTurbulentKineticEnergySource (GLSTurbulentKineticEnergySource) on VelocityMesh
283
+GLSTurbulentKineticEnergyAbsorption (GLSTurbulentKineticEnergyAbsorption) on VelocityMesh
284
+GLSGenericSecondQuantity (GLSGenericSecondQuantity) on VelocityMesh
285
+GLSGenericSecondQuantitySource (GLSGenericSecondQuantitySource) on VelocityMesh
286
+GLSGenericSecondQuantityAbsorption (GLSGenericSecondQuantityAbsorption) on VelocityMesh
287
+GLSLengthScale (GLSLengthScale) on VelocityMesh
288
+GLSBuoyancyFrequency (GLSBuoyancyFrequency) on VelocityMesh
289
+GLSVelocityShear (GLSVelocityShear) on VelocityMesh
290
+GLSShearProduction (GLSShearProduction) on VelocityMesh
291
+GLSBuoyancyProduction (GLSBuoyancyProduction) on VelocityMesh
292
+GLSDissipationEpsilon (GLSDissipationEpsilon) on VelocityMesh
293
+GLSStabilityFunctionSM (GLSStabilityFunctionSM) on VelocityMesh
294
+GLSStabilityFunctionSH (GLSStabilityFunctionSH) on VelocityMesh
295
+GLSSource1 (GLSSource1) on VelocityMesh
296
+GLSSource2 (GLSSource2) on VelocityMesh
297
+GLSAbsorption1 (GLSAbsorption1) on VelocityMesh
298
+GLSAbsorption2 (GLSAbsorption2) on VelocityMesh
299
+GLSWallFunction (GLSWallFunction) on VelocityMesh
300
+GLSVerticalViscosity (GLSVerticalViscosity) on VelocityMesh
301
+GLSVerticalDiffusivity (GLSVerticalDiffusivity) on VelocityMesh
302
+OldDensity (OldDensity) on VelocityMesh
303
+IteratedDensity (IteratedDensity) on VelocityMesh
304
+OldTemperature (OldTemperature) on VelocityMesh
305
+IteratedTemperature (IteratedTemperature) on VelocityMesh
306
+OldSalinity (OldSalinity) on VelocityMesh
307
+IteratedSalinity (IteratedSalinity) on VelocityMesh
308
+OldPerturbationDensity (OldPerturbationDensity) on VelocityMesh
309
+IteratedPerturbationDensity (IteratedPerturbationDensity) on VelocityMesh
310
+OldCFLNumber (OldCFLNumber) on VelocityMesh
311
+IteratedCFLNumber (IteratedCFLNumber) on VelocityMesh
312
+OldDistanceToTop (OldDistanceToTop) on VelocityMesh
313
+IteratedDistanceToTop (IteratedDistanceToTop) on VelocityMesh
314
+OldDistanceToBottom (OldDistanceToBottom) on VelocityMesh
315
+IteratedDistanceToBottom (IteratedDistanceToBottom) on VelocityMesh
316
+OldGLSTurbulentKineticEnergy (OldGLSTurbulentKineticEnergy) on VelocityMesh
317
+IteratedGLSTurbulentKineticEnergy (IteratedGLSTurbulentKineticEnergy) on VelocityMesh
318
+OldGLSTurbulentKineticEnergySource (OldGLSTurbulentKineticEnergySource) on VelocityMesh
319
+IteratedGLSTurbulentKineticEnergySource (IteratedGLSTurbulentKineticEnergySource) on VelocityMesh
320
+OldGLSTurbulentKineticEnergyAbsorption (OldGLSTurbulentKineticEnergyAbsorption) on VelocityMesh
321
+IteratedGLSTurbulentKineticEnergyAbsorption (IteratedGLSTurbulentKineticEnergyAbsorption) on VelocityMesh
322
+OldGLSGenericSecondQuantity (OldGLSGenericSecondQuantity) on VelocityMesh
323
+IteratedGLSGenericSecondQuantity (IteratedGLSGenericSecondQuantity) on VelocityMesh
324
+OldGLSGenericSecondQuantitySource (OldGLSGenericSecondQuantitySource) on VelocityMesh
325
+IteratedGLSGenericSecondQuantitySource (IteratedGLSGenericSecondQuantitySource) on VelocityMesh
326
+OldGLSGenericSecondQuantityAbsorption (OldGLSGenericSecondQuantityAbsorption) on VelocityMesh
327
+IteratedGLSGenericSecondQuantityAbsorption (IteratedGLSGenericSecondQuantityAbsorption) on VelocityMesh
328
+OldGLSLengthScale (OldGLSLengthScale) on VelocityMesh
329
+IteratedGLSLengthScale (IteratedGLSLengthScale) on VelocityMesh
330
+OldGLSBuoyancyFrequency (OldGLSBuoyancyFrequency) on VelocityMesh
331
+IteratedGLSBuoyancyFrequency (IteratedGLSBuoyancyFrequency) on VelocityMesh
332
+OldGLSVelocityShear (OldGLSVelocityShear) on VelocityMesh
333
+IteratedGLSVelocityShear (IteratedGLSVelocityShear) on VelocityMesh
334
+OldGLSShearProduction (OldGLSShearProduction) on VelocityMesh
335
+IteratedGLSShearProduction (IteratedGLSShearProduction) on VelocityMesh
336
+OldGLSBuoyancyProduction (OldGLSBuoyancyProduction) on VelocityMesh
337
+IteratedGLSBuoyancyProduction (IteratedGLSBuoyancyProduction) on VelocityMesh
338
+OldGLSDissipationEpsilon (OldGLSDissipationEpsilon) on VelocityMesh
339
+IteratedGLSDissipationEpsilon (IteratedGLSDissipationEpsilon) on VelocityMesh
340
+OldGLSStabilityFunctionSM (OldGLSStabilityFunctionSM) on VelocityMesh
341
+IteratedGLSStabilityFunctionSM (IteratedGLSStabilityFunctionSM) on VelocityMesh
342
+OldGLSStabilityFunctionSH (OldGLSStabilityFunctionSH) on VelocityMesh
343
+IteratedGLSStabilityFunctionSH (IteratedGLSStabilityFunctionSH) on VelocityMesh
344
+OldGLSSource1 (OldGLSSource1) on VelocityMesh
345
+IteratedGLSSource1 (IteratedGLSSource1) on VelocityMesh
346
+OldGLSSource2 (OldGLSSource2) on VelocityMesh
347
+IteratedGLSSource2 (IteratedGLSSource2) on VelocityMesh
348
+OldGLSAbsorption1 (OldGLSAbsorption1) on VelocityMesh
349
+IteratedGLSAbsorption1 (IteratedGLSAbsorption1) on VelocityMesh
350
+OldGLSAbsorption2 (OldGLSAbsorption2) on VelocityMesh
351
+IteratedGLSAbsorption2 (IteratedGLSAbsorption2) on VelocityMesh
352
+OldGLSWallFunction (OldGLSWallFunction) on VelocityMesh
353
+IteratedGLSWallFunction (IteratedGLSWallFunction) on VelocityMesh
354
+OldGLSVerticalViscosity (OldGLSVerticalViscosity) on VelocityMesh
355
+IteratedGLSVerticalViscosity (IteratedGLSVerticalViscosity) on VelocityMesh
356
+OldGLSVerticalDiffusivity (OldGLSVerticalDiffusivity) on VelocityMesh
357
+IteratedGLSVerticalDiffusivity (IteratedGLSVerticalDiffusivity) on VelocityMesh
358
+VelocityBuoyancyDensity (VelocityBuoyancyDensity) on VelocityMesh
359
+Time (Time) on CoordinateMesh
360
Vector fields:
361
+Coordinate (Coordinate) on CoordinateMesh
362
+Velocity (Velocity) on VelocityMesh
363
+VelocityAbsorption (VelocityAbsorption) on VelocityMesh
364
+GravityDirection (GravityDirection) on CoordinateMesh
365
+OldVelocity (OldVelocity) on VelocityMesh
366
+IteratedVelocity (IteratedVelocity) on VelocityMesh
367
+NonlinearVelocity (NonlinearVelocity) on VelocityMesh
368
+OldVelocityAbsorption (OldVelocityAbsorption) on VelocityMesh
369
+IteratedVelocityAbsorption (IteratedVelocityAbsorption) on VelocityMesh
370
+OldGravityDirection (OldGravityDirection) on CoordinateMesh
371
+IteratedGravityDirection (IteratedGravityDirection) on CoordinateMesh
372
+OriginalCoordinate (OriginalCoordinate) on CoordinateMesh
373
+OldCoordinate (OldCoordinate) on CoordinateMesh
374
+IteratedCoordinate (IteratedCoordinate) on CoordinateMesh
375
+GridVelocity (GridVelocity) on CoordinateMesh
376
Tensor fields:
377
+Viscosity (Viscosity) on VelocityMesh
378
+GLSTurbulentKineticEnergyDiffusivity (GLSTurbulentKineticEnergyDiffusivity) on VelocityMesh
379
+GLSGenericSecondQuantityDiffusivity (GLSGenericSecondQuantityDiffusivity) on VelocityMesh
380
+GLSBackgroundViscosity (GLSBackgroundViscosity) on VelocityMesh
381
+GLSBackgroundDiffusivity (GLSBackgroundDiffusivity) on VelocityMesh
382
+GLSEddyViscosityKM (GLSEddyViscosityKM) on VelocityMesh
383
+GLSEddyDiffusivityKH (GLSEddyDiffusivityKH) on VelocityMesh
384
+TemperatureDiffusivity (TemperatureDiffusivity) on VelocityMesh
385
+SalinityDiffusivity (SalinityDiffusivity) on VelocityMesh
386
CSR sparsities:
387
none
388
CSR Matrices:
389
none
390
Block CSR Matrices:
391
none
392
In calculate_diagnostic_variables
393
In calculate_perturbation_density
394
In calculate_perturbation_density
395
Exiting calculate_diagnostic_variables
396
In calculate_diagnostic_variables
397
Exiting calculate_diagnostic_variables
398
In initialise_diagnostics
399
Exiting initialise_diagnostics
400
do_checkpoint returning .false.
401
In write_state
402
In vtk_write_state_new_options
403
Exiting vtk_write_state_new_options
404
Exiting write_state
405
GLS Parameters
406
--------------------------------------------
407
cm0: 0.52646469697902409
408
kappa: 0.36474544142360915
409
p: 3.0000000000000000
410
m: 1.5000000000000000
411
n: -1.0000000000000000
412
sigma_k: 1.3000000000000000
413
sigma_psi: 1.0000000000000000
414
Calculating BCs: T
415
Using wall function: none
416
Smoothing NN2: F
417
Smoothing MM2: F
418
--------------------------------------------
419
Initialising the GLS surfaces required for BCs
420
In compute_lumped_mass
421
In gls_diffusivity
422
Calculating GLS stability functions
423
In gls_diffusivity
424
********************
425
*** NEW TIMESTEP ***
426
********************
427
Current simulation time: 0.0000000000000000
428
Timestep number: 1
429
Timestep size (dt): 15.000000000000000
430
In set_boundary_conditions
431
In set_prescribed_field_values
432
In enforce_discrete_properties
433
Exiting enforce_discrete_properties
434
###################
435
Start of another nonlinear iteration; ITS,nonlinear_iterations= 1 2
436
###################
437
Considering scalar field Density in state Fluid
438
Finished field Density in state Fluid
439
Considering scalar field Temperature in state Fluid
440
In solve_field_equation_cg
441
In assemble_advection_diffusion_cg
442
Exiting assemble_advection_diffusion_cg
443
Assembling matrix.
444
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
445
Halo nodes are consistent with trailing receive ordering
446
Matrix assembly completed.
447
Inside setup_ksp_from_options
448
Assembling RHS.
449
RHS assembly completed.
450
Assembling initial guess.
451
Initial guess assembly completed.
452
Entering solver.
453
Out of solver.
454
Exiting solve_field_equation_cg
455
Finished field Temperature in state Fluid
456
Considering scalar field Salinity in state Fluid
457
In solve_field_equation_cg
458
In assemble_advection_diffusion_cg
459
Exiting assemble_advection_diffusion_cg
460
Assembling matrix.
461
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
462
Halo nodes are consistent with trailing receive ordering
463
Matrix assembly completed.
464
Inside setup_ksp_from_options
465
Assembling RHS.
466
RHS assembly completed.
467
Assembling initial guess.
468
Initial guess assembly completed.
469
Entering solver.
470
Out of solver.
471
Exiting solve_field_equation_cg
472
Finished field Salinity in state Fluid
473
Considering scalar field PerturbationDensity in state Fluid
474
Finished field PerturbationDensity in state Fluid
475
Considering scalar field CFLNumber in state Fluid
476
Finished field CFLNumber in state Fluid
477
Considering scalar field DistanceToTop in state Fluid
478
Finished field DistanceToTop in state Fluid
479
Considering scalar field DistanceToBottom in state Fluid
480
Finished field DistanceToBottom in state Fluid
481
Considering scalar field GLSTurbulentKineticEnergy in state Fluid
482
In gls_tke
483
Calculating GLS stability functions
484
Calculating BCs
485
In assemble_advectiondiffusion_m_cv
486
In find_upwind_values
487
In calculate_all_upwind_project
488
Exiting calculate_all_upwind_project
489
Exiting find_upwind_values
490
Exiting assemble_advectiondiffusion_m_cv
491
In assemble_field_eqn_cv
492
Exiting assemble_field_eqn_cv
493
Assembling matrix.
494
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
495
Halo nodes are consistent with trailing receive ordering
496
Matrix assembly completed.
497
Inside setup_ksp_from_options
498
Assembling RHS.
499
RHS assembly completed.
500
Assembling initial guess.
501
Initial guess assembly completed.
502
Entering solver.
503
Out of solver.
504
In assemble_advectiondiffusion_m_cv
505
In find_upwind_values
506
In calculate_all_upwind_project
507
Exiting calculate_all_upwind_project
508
Exiting find_upwind_values
509
Exiting assemble_advectiondiffusion_m_cv
510
In assemble_field_eqn_cv
511
Exiting assemble_field_eqn_cv
512
Assembling matrix.
513
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
514
Halo nodes are consistent with trailing receive ordering
515
Matrix assembly completed.
516
Inside setup_ksp_from_options
517
Assembling RHS.
518
RHS assembly completed.
519
Assembling initial guess.
520
Initial guess assembly completed.
521
Entering solver.
522
Out of solver.
523
In assemble_advectiondiffusion_m_cv
524
In find_upwind_values
525
In calculate_all_upwind_project
526
Exiting calculate_all_upwind_project
527
Exiting find_upwind_values
528
Exiting assemble_advectiondiffusion_m_cv
529
In assemble_field_eqn_cv
530
Exiting assemble_field_eqn_cv
531
Assembling matrix.
532
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
533
Halo nodes are consistent with trailing receive ordering
534
Matrix assembly completed.
535
Inside setup_ksp_from_options
536
Assembling RHS.
537
RHS assembly completed.
538
Assembling initial guess.
539
Initial guess assembly completed.
540
Entering solver.
541
Out of solver.
542
Finished field GLSTurbulentKineticEnergy in state Fluid
543
Considering scalar field GLSGenericSecondQuantity in state Fluid
544
In gls_psi
545
In assemble_advectiondiffusion_m_cv
546
In find_upwind_values
547
In calculate_all_upwind_project
548
Exiting calculate_all_upwind_project
549
Exiting find_upwind_values
550
Exiting assemble_advectiondiffusion_m_cv
551
In assemble_field_eqn_cv
552
Exiting assemble_field_eqn_cv
553
Assembling matrix.
554
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
555
Halo nodes are consistent with trailing receive ordering
556
Matrix assembly completed.
557
Inside setup_ksp_from_options
558
Assembling RHS.
559
RHS assembly completed.
560
Assembling initial guess.
561
Initial guess assembly completed.
562
Entering solver.
563
Out of solver.
564
In assemble_advectiondiffusion_m_cv
565
In find_upwind_values
566
In calculate_all_upwind_project
567
Exiting calculate_all_upwind_project
568
Exiting find_upwind_values
569
Exiting assemble_advectiondiffusion_m_cv
570
In assemble_field_eqn_cv
571
Exiting assemble_field_eqn_cv
572
Assembling matrix.
573
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
574
Halo nodes are consistent with trailing receive ordering
575
Matrix assembly completed.
576
Inside setup_ksp_from_options
577
Assembling RHS.
578
RHS assembly completed.
579
Assembling initial guess.
580
Initial guess assembly completed.
581
Entering solver.
582
Out of solver.
583
In assemble_advectiondiffusion_m_cv
584
In find_upwind_values
585
In calculate_all_upwind_project
586
Exiting calculate_all_upwind_project
587
Exiting find_upwind_values
588
Exiting assemble_advectiondiffusion_m_cv
589
In assemble_field_eqn_cv
590
Exiting assemble_field_eqn_cv
591
Assembling matrix.
592
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
593
Halo nodes are consistent with trailing receive ordering
594
Matrix assembly completed.
595
Inside setup_ksp_from_options
596
Assembling RHS.
597
RHS assembly completed.
598
Assembling initial guess.
599
Initial guess assembly completed.
600
Entering solver.
601
Out of solver.
602
Finished field GLSGenericSecondQuantity in state Fluid
603
In gls_diffusivity
604
Entering solve_momentum
605
Entering get_pressure_options
606
Entering get_phase_submaterials
607
Number of sub-materials = 1
608
Exiting get_phase_submaterials
609
Entering calculate_momentum_diagnostics
610
Entering calculate_diagnostic_phase_volume_fraction
611
Exiting calculate_diagnostic_phase_volume_fraction
612
In calculate_perturbation_density
613
Exiting calculate_momentum_diagnostics
614
Entering get_velocity_options
615
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
616
Halo nodes are consistent with trailing receive ordering
617
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
618
Halo nodes are consistent with trailing receive ordering
619
Entering construct_momentum_cg
620
Initialising Coriolis
621
Inside wind_forcing
622
Entering advance_velocity
623
Inside setup_ksp_from_options
624
Assembling RHS.
625
RHS assembly completed.
626
Assembling initial guess.
627
Initial guess assembly completed.
628
Entering solver.
629
Out of solver.
630
Entering finalise_state
631
###################
632
Start of another nonlinear iteration; ITS,nonlinear_iterations= 2 2
633
###################
634
Considering scalar field Density in state Fluid
635
Finished field Density in state Fluid
636
Considering scalar field Temperature in state Fluid
637
In solve_field_equation_cg
638
In assemble_advection_diffusion_cg
639
Exiting assemble_advection_diffusion_cg
640
Assembling matrix.
641
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
642
Halo nodes are consistent with trailing receive ordering
643
Matrix assembly completed.
644
Inside setup_ksp_from_options
645
Assembling RHS.
646
RHS assembly completed.
647
Assembling initial guess.
648
Initial guess assembly completed.
649
Entering solver.
650
Out of solver.
651
Exiting solve_field_equation_cg
652
Finished field Temperature in state Fluid
653
Considering scalar field Salinity in state Fluid
654
In solve_field_equation_cg
655
In assemble_advection_diffusion_cg
656
Exiting assemble_advection_diffusion_cg
657
Assembling matrix.
658
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
659
Halo nodes are consistent with trailing receive ordering
660
Matrix assembly completed.
661
Inside setup_ksp_from_options
662
Assembling RHS.
663
RHS assembly completed.
664
Assembling initial guess.
665
Initial guess assembly completed.
666
Entering solver.
667
Out of solver.
668
Exiting solve_field_equation_cg
669
Finished field Salinity in state Fluid
670
Considering scalar field PerturbationDensity in state Fluid
671
Finished field PerturbationDensity in state Fluid
672
Considering scalar field CFLNumber in state Fluid
673
Finished field CFLNumber in state Fluid
674
Considering scalar field DistanceToTop in state Fluid
675
Finished field DistanceToTop in state Fluid
676
Considering scalar field DistanceToBottom in state Fluid
677
Finished field DistanceToBottom in state Fluid
678
Considering scalar field GLSTurbulentKineticEnergy in state Fluid
679
In gls_tke
680
Calculating GLS stability functions
681
Calculating BCs
682
In assemble_advectiondiffusion_m_cv
683
In find_upwind_values
684
In calculate_all_upwind_project
685
Exiting calculate_all_upwind_project
686
Exiting find_upwind_values
687
Exiting assemble_advectiondiffusion_m_cv
688
In assemble_field_eqn_cv
689
Exiting assemble_field_eqn_cv
690
Assembling matrix.
691
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
692
Halo nodes are consistent with trailing receive ordering
693
Matrix assembly completed.
694
Inside setup_ksp_from_options
695
Assembling RHS.
696
RHS assembly completed.
697
Assembling initial guess.
698
Initial guess assembly completed.
699
Entering solver.
700
Out of solver.
701
In assemble_advectiondiffusion_m_cv
702
In find_upwind_values
703
In calculate_all_upwind_project
704
Exiting calculate_all_upwind_project
705
Exiting find_upwind_values
706
Exiting assemble_advectiondiffusion_m_cv
707
In assemble_field_eqn_cv
708
Exiting assemble_field_eqn_cv
709
Assembling matrix.
710
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
711
Halo nodes are consistent with trailing receive ordering
712
Matrix assembly completed.
713
Inside setup_ksp_from_options
714
Assembling RHS.
715
RHS assembly completed.
716
Assembling initial guess.
717
Initial guess assembly completed.
718
Entering solver.
719
Out of solver.
720
In assemble_advectiondiffusion_m_cv
721
In find_upwind_values
722
In calculate_all_upwind_project
723
Exiting calculate_all_upwind_project
724
Exiting find_upwind_values
725
Exiting assemble_advectiondiffusion_m_cv
726
In assemble_field_eqn_cv
727
Exiting assemble_field_eqn_cv
728
Assembling matrix.
729
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
730
Halo nodes are consistent with trailing receive ordering
731
Matrix assembly completed.
732
Inside setup_ksp_from_options
733
Assembling RHS.
734
RHS assembly completed.
735
Assembling initial guess.
736
Initial guess assembly completed.
737
Entering solver.
738
Out of solver.
739
Finished field GLSTurbulentKineticEnergy in state Fluid
740
Considering scalar field GLSGenericSecondQuantity in state Fluid
741
In gls_psi
742
In assemble_advectiondiffusion_m_cv
743
In find_upwind_values
744
In calculate_all_upwind_project
745
Exiting calculate_all_upwind_project
746
Exiting find_upwind_values
747
Exiting assemble_advectiondiffusion_m_cv
748
In assemble_field_eqn_cv
749
Exiting assemble_field_eqn_cv
750
Assembling matrix.
751
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
752
Halo nodes are consistent with trailing receive ordering
753
Matrix assembly completed.
754
Inside setup_ksp_from_options
755
Assembling RHS.
756
RHS assembly completed.
757
Assembling initial guess.
758
Initial guess assembly completed.
759
Entering solver.
760
Out of solver.
761
In assemble_advectiondiffusion_m_cv
762
In find_upwind_values
763
In calculate_all_upwind_project
764
Exiting calculate_all_upwind_project
765
Exiting find_upwind_values
766
Exiting assemble_advectiondiffusion_m_cv
767
In assemble_field_eqn_cv
768
Exiting assemble_field_eqn_cv
769
Assembling matrix.
770
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
771
Halo nodes are consistent with trailing receive ordering
772
Matrix assembly completed.
773
Inside setup_ksp_from_options
774
Assembling RHS.
775
RHS assembly completed.
776
Assembling initial guess.
777
Initial guess assembly completed.
778
Entering solver.
779
Out of solver.
780
In assemble_advectiondiffusion_m_cv
781
In find_upwind_values
782
In calculate_all_upwind_project
783
Exiting calculate_all_upwind_project
784
Exiting find_upwind_values
785
Exiting assemble_advectiondiffusion_m_cv
786
In assemble_field_eqn_cv
787
Exiting assemble_field_eqn_cv
788
Assembling matrix.
789
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
790
Halo nodes are consistent with trailing receive ordering
791
Matrix assembly completed.
792
Inside setup_ksp_from_options
793
Assembling RHS.
794
RHS assembly completed.
795
Assembling initial guess.
796
Initial guess assembly completed.
797
Entering solver.
798
Out of solver.
799
Finished field GLSGenericSecondQuantity in state Fluid
800
In gls_diffusivity
801
Entering solve_momentum
802
Entering get_pressure_options
803
Entering get_phase_submaterials
804
Number of sub-materials = 1
805
Exiting get_phase_submaterials
806
Entering calculate_momentum_diagnostics
807
Entering calculate_diagnostic_phase_volume_fraction
808
Exiting calculate_diagnostic_phase_volume_fraction
809
In calculate_perturbation_density
810
Exiting calculate_momentum_diagnostics
811
Entering get_velocity_options
812
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
813
Halo nodes are consistent with trailing receive ordering
814
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
815
Halo nodes are consistent with trailing receive ordering
816
Entering construct_momentum_cg
817
Inside wind_forcing
818
Entering advance_velocity
819
Inside setup_ksp_from_options
820
Assembling RHS.
821
RHS assembly completed.
822
Assembling initial guess.
823
Initial guess assembly completed.
824
Entering solver.
825
Out of solver.
826
Entering finalise_state
827
In calculate_diagnostic_variables
828
In calculate_perturbation_density
829
In calculate_perturbation_density
830
Exiting calculate_diagnostic_variables
831
In calculate_diagnostic_variables
832
Exiting calculate_diagnostic_variables
833
In write_diagnostics
834
Registered diagnostics:
835
In write_detectors
836
In set_dirichlet_consistent
837
********************
838
*** NEW TIMESTEP ***
839
********************
840
Current simulation time: 15.000000000000000
841
Timestep number: 2
842
Timestep size (dt): 15.000000000000000
843
In set_boundary_conditions
844
In set_prescribed_field_values
845
In enforce_discrete_properties
846
Exiting enforce_discrete_properties
847
###################
848
Start of another nonlinear iteration; ITS,nonlinear_iterations= 1 2
849
###################
850
Considering scalar field Density in state Fluid
851
Finished field Density in state Fluid
852
Considering scalar field Temperature in state Fluid
853
In solve_field_equation_cg
854
In assemble_advection_diffusion_cg
855
Exiting assemble_advection_diffusion_cg
856
Assembling matrix.
857
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
858
Halo nodes are consistent with trailing receive ordering
859
Matrix assembly completed.
860
Inside setup_ksp_from_options
861
Assembling RHS.
862
RHS assembly completed.
863
Assembling initial guess.
864
Initial guess assembly completed.
865
Entering solver.
866
Out of solver.
867
Exiting solve_field_equation_cg
868
Finished field Temperature in state Fluid
869
Considering scalar field Salinity in state Fluid
870
In solve_field_equation_cg
871
In assemble_advection_diffusion_cg
872
Exiting assemble_advection_diffusion_cg
873
Assembling matrix.
874
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
875
Halo nodes are consistent with trailing receive ordering
876
Matrix assembly completed.
877
Inside setup_ksp_from_options
878
Assembling RHS.
879
RHS assembly completed.
880
Assembling initial guess.
881
Initial guess assembly completed.
882
Entering solver.
883
Out of solver.
884
Exiting solve_field_equation_cg
885
Finished field Salinity in state Fluid
886
Considering scalar field PerturbationDensity in state Fluid
887
Finished field PerturbationDensity in state Fluid
888
Considering scalar field CFLNumber in state Fluid
889
Finished field CFLNumber in state Fluid
890
Considering scalar field DistanceToTop in state Fluid
891
Finished field DistanceToTop in state Fluid
892
Considering scalar field DistanceToBottom in state Fluid
893
Finished field DistanceToBottom in state Fluid
894
Considering scalar field GLSTurbulentKineticEnergy in state Fluid
895
In gls_tke
896
Calculating GLS stability functions
897
Calculating BCs
898
In assemble_advectiondiffusion_m_cv
899
In find_upwind_values
900
In calculate_all_upwind_project
901
Exiting calculate_all_upwind_project
902
Exiting find_upwind_values
903
Exiting assemble_advectiondiffusion_m_cv
904
In assemble_field_eqn_cv
905
Exiting assemble_field_eqn_cv
906
Assembling matrix.
907
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
908
Halo nodes are consistent with trailing receive ordering
909
Matrix assembly completed.
910
Inside setup_ksp_from_options
911
Assembling RHS.
912
RHS assembly completed.
913
Assembling initial guess.
914
Initial guess assembly completed.
915
Entering solver.
916
Out of solver.
917
In assemble_advectiondiffusion_m_cv
918
In find_upwind_values
919
In calculate_all_upwind_project
920
Exiting calculate_all_upwind_project
921
Exiting find_upwind_values
922
Exiting assemble_advectiondiffusion_m_cv
923
In assemble_field_eqn_cv
924
Exiting assemble_field_eqn_cv
925
Assembling matrix.
926
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
927
Halo nodes are consistent with trailing receive ordering
928
Matrix assembly completed.
929
Inside setup_ksp_from_options
930
Assembling RHS.
931
RHS assembly completed.
932
Assembling initial guess.
933
Initial guess assembly completed.
934
Entering solver.
935
Out of solver.
936
In assemble_advectiondiffusion_m_cv
937
In find_upwind_values
938
In calculate_all_upwind_project
939
Exiting calculate_all_upwind_project
940
Exiting find_upwind_values
941
Exiting assemble_advectiondiffusion_m_cv
942
In assemble_field_eqn_cv
943
Exiting assemble_field_eqn_cv
944
Assembling matrix.
945
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
946
Halo nodes are consistent with trailing receive ordering
947
Matrix assembly completed.
948
Inside setup_ksp_from_options
949
Assembling RHS.
950
RHS assembly completed.
951
Assembling initial guess.
952
Initial guess assembly completed.
953
Entering solver.
954
Out of solver.
955
Finished field GLSTurbulentKineticEnergy in state Fluid
956
Considering scalar field GLSGenericSecondQuantity in state Fluid
957
In gls_psi
958
In assemble_advectiondiffusion_m_cv
959
In find_upwind_values
960
In calculate_all_upwind_project
961
Exiting calculate_all_upwind_project
962
Exiting find_upwind_values
963
Exiting assemble_advectiondiffusion_m_cv
964
In assemble_field_eqn_cv
965
Exiting assemble_field_eqn_cv
966
Assembling matrix.
967
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
968
Halo nodes are consistent with trailing receive ordering
969
Matrix assembly completed.
970
Inside setup_ksp_from_options
971
Assembling RHS.
972
RHS assembly completed.
973
Assembling initial guess.
974
Initial guess assembly completed.
975
Entering solver.
976
Out of solver.
977
In assemble_advectiondiffusion_m_cv
978
In find_upwind_values
979
In calculate_all_upwind_project
980
Exiting calculate_all_upwind_project
981
Exiting find_upwind_values
982
Exiting assemble_advectiondiffusion_m_cv
983
In assemble_field_eqn_cv
984
Exiting assemble_field_eqn_cv
985
Assembling matrix.
986
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
987
Halo nodes are consistent with trailing receive ordering
988
Matrix assembly completed.
989
Inside setup_ksp_from_options
990
Assembling RHS.
991
RHS assembly completed.
992
Assembling initial guess.
993
Initial guess assembly completed.
994
Entering solver.
995
Out of solver.
996
In assemble_advectiondiffusion_m_cv
997
In find_upwind_values
998
In calculate_all_upwind_project
999
Exiting calculate_all_upwind_project
1000
Exiting find_upwind_values
1001
Exiting assemble_advectiondiffusion_m_cv
1002
In assemble_field_eqn_cv
1003
Exiting assemble_field_eqn_cv
1004
Assembling matrix.
1005
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1006
Halo nodes are consistent with trailing receive ordering
1007
Matrix assembly completed.
1008
Inside setup_ksp_from_options
1009
Assembling RHS.
1010
RHS assembly completed.
1011
Assembling initial guess.
1012
Initial guess assembly completed.
1013
Entering solver.
1014
Out of solver.
1015
Finished field GLSGenericSecondQuantity in state Fluid
1016
In gls_diffusivity
1017
Entering solve_momentum
1018
Entering get_pressure_options
1019
Entering get_phase_submaterials
1020
Number of sub-materials = 1
1021
Exiting get_phase_submaterials
1022
Entering calculate_momentum_diagnostics
1023
Entering calculate_diagnostic_phase_volume_fraction
1024
Exiting calculate_diagnostic_phase_volume_fraction
1025
In calculate_perturbation_density
1026
Exiting calculate_momentum_diagnostics
1027
Entering get_velocity_options
1028
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1029
Halo nodes are consistent with trailing receive ordering
1030
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1031
Halo nodes are consistent with trailing receive ordering
1032
Entering construct_momentum_cg
1033
Inside wind_forcing
1034
Entering advance_velocity
1035
Inside setup_ksp_from_options
1036
Assembling RHS.
1037
RHS assembly completed.
1038
Assembling initial guess.
1039
Initial guess assembly completed.
1040
Entering solver.
1041
Out of solver.
1042
Entering finalise_state
1043
###################
1044
Start of another nonlinear iteration; ITS,nonlinear_iterations= 2 2
1045
###################
1046
Considering scalar field Density in state Fluid
1047
Finished field Density in state Fluid
1048
Considering scalar field Temperature in state Fluid
1049
In solve_field_equation_cg
1050
In assemble_advection_diffusion_cg
1051
Exiting assemble_advection_diffusion_cg
1052
Assembling matrix.
1053
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1054
Halo nodes are consistent with trailing receive ordering
1055
Matrix assembly completed.
1056
Inside setup_ksp_from_options
1057
Assembling RHS.
1058
RHS assembly completed.
1059
Assembling initial guess.
1060
Initial guess assembly completed.
1061
Entering solver.
1062
Out of solver.
1063
Exiting solve_field_equation_cg
1064
Finished field Temperature in state Fluid
1065
Considering scalar field Salinity in state Fluid
1066
In solve_field_equation_cg
1067
In assemble_advection_diffusion_cg
1068
Exiting assemble_advection_diffusion_cg
1069
Assembling matrix.
1070
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1071
Halo nodes are consistent with trailing receive ordering
1072
Matrix assembly completed.
1073
Inside setup_ksp_from_options
1074
Assembling RHS.
1075
RHS assembly completed.
1076
Assembling initial guess.
1077
Initial guess assembly completed.
1078
Entering solver.
1079
Out of solver.
1080
Exiting solve_field_equation_cg
1081
Finished field Salinity in state Fluid
1082
Considering scalar field PerturbationDensity in state Fluid
1083
Finished field PerturbationDensity in state Fluid
1084
Considering scalar field CFLNumber in state Fluid
1085
Finished field CFLNumber in state Fluid
1086
Considering scalar field DistanceToTop in state Fluid
1087
Finished field DistanceToTop in state Fluid
1088
Considering scalar field DistanceToBottom in state Fluid
1089
Finished field DistanceToBottom in state Fluid
1090
Considering scalar field GLSTurbulentKineticEnergy in state Fluid
1091
In gls_tke
1092
Calculating GLS stability functions
1093
Calculating BCs
1094
In assemble_advectiondiffusion_m_cv
1095
In find_upwind_values
1096
In calculate_all_upwind_project
1097
Exiting calculate_all_upwind_project
1098
Exiting find_upwind_values
1099
Exiting assemble_advectiondiffusion_m_cv
1100
In assemble_field_eqn_cv
1101
Exiting assemble_field_eqn_cv
1102
Assembling matrix.
1103
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1104
Halo nodes are consistent with trailing receive ordering
1105
Matrix assembly completed.
1106
Inside setup_ksp_from_options
1107
Assembling RHS.
1108
RHS assembly completed.
1109
Assembling initial guess.
1110
Initial guess assembly completed.
1111
Entering solver.
1112
Out of solver.
1113
In assemble_advectiondiffusion_m_cv
1114
In find_upwind_values
1115
In calculate_all_upwind_project
1116
Exiting calculate_all_upwind_project
1117
Exiting find_upwind_values
1118
Exiting assemble_advectiondiffusion_m_cv
1119
In assemble_field_eqn_cv
1120
Exiting assemble_field_eqn_cv
1121
Assembling matrix.
1122
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1123
Halo nodes are consistent with trailing receive ordering
1124
Matrix assembly completed.
1125
Inside setup_ksp_from_options
1126
Assembling RHS.
1127
RHS assembly completed.
1128
Assembling initial guess.
1129
Initial guess assembly completed.
1130
Entering solver.
1131
Out of solver.
1132
In assemble_advectiondiffusion_m_cv
1133
In find_upwind_values
1134
In calculate_all_upwind_project
1135
Exiting calculate_all_upwind_project
1136
Exiting find_upwind_values
1137
Exiting assemble_advectiondiffusion_m_cv
1138
In assemble_field_eqn_cv
1139
Exiting assemble_field_eqn_cv
1140
Assembling matrix.
1141
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1142
Halo nodes are consistent with trailing receive ordering
1143
Matrix assembly completed.
1144
Inside setup_ksp_from_options
1145
Assembling RHS.
1146
RHS assembly completed.
1147
Assembling initial guess.
1148
Initial guess assembly completed.
1149
Entering solver.
1150
Out of solver.
1151
Finished field GLSTurbulentKineticEnergy in state Fluid
1152
Considering scalar field GLSGenericSecondQuantity in state Fluid
1153
In gls_psi
1154
In assemble_advectiondiffusion_m_cv
1155
In find_upwind_values
1156
In calculate_all_upwind_project
1157
Exiting calculate_all_upwind_project
1158
Exiting find_upwind_values
1159
Exiting assemble_advectiondiffusion_m_cv
1160
In assemble_field_eqn_cv
1161
Exiting assemble_field_eqn_cv
1162
Assembling matrix.
1163
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1164
Halo nodes are consistent with trailing receive ordering
1165
Matrix assembly completed.
1166
Inside setup_ksp_from_options
1167
Assembling RHS.
1168
RHS assembly completed.
1169
Assembling initial guess.
1170
Initial guess assembly completed.
1171
Entering solver.
1172
Out of solver.
1173
In assemble_advectiondiffusion_m_cv
1174
In find_upwind_values
1175
In calculate_all_upwind_project
1176
Exiting calculate_all_upwind_project
1177
Exiting find_upwind_values
1178
Exiting assemble_advectiondiffusion_m_cv
1179
In assemble_field_eqn_cv
1180
Exiting assemble_field_eqn_cv
1181
Assembling matrix.
1182
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1183
Halo nodes are consistent with trailing receive ordering
1184
Matrix assembly completed.
1185
Inside setup_ksp_from_options
1186
Assembling RHS.
1187
RHS assembly completed.
1188
Assembling initial guess.
1189
Initial guess assembly completed.
1190
Entering solver.
1191
Out of solver.
1192
In assemble_advectiondiffusion_m_cv
1193
In find_upwind_values
1194
In calculate_all_upwind_project
1195
Exiting calculate_all_upwind_project
1196
Exiting find_upwind_values
1197
Exiting assemble_advectiondiffusion_m_cv
1198
In assemble_field_eqn_cv
1199
Exiting assemble_field_eqn_cv
1200
Assembling matrix.
1201
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1202
Halo nodes are consistent with trailing receive ordering
1203
Matrix assembly completed.
1204
Inside setup_ksp_from_options
1205
Assembling RHS.
1206
RHS assembly completed.
1207
Assembling initial guess.
1208
Initial guess assembly completed.
1209
Entering solver.
1210
Out of solver.
1211
Finished field GLSGenericSecondQuantity in state Fluid
1212
In gls_diffusivity
1213
Entering solve_momentum
1214
Entering get_pressure_options
1215
Entering get_phase_submaterials
1216
Number of sub-materials = 1
1217
Exiting get_phase_submaterials
1218
Entering calculate_momentum_diagnostics
1219
Entering calculate_diagnostic_phase_volume_fraction
1220
Exiting calculate_diagnostic_phase_volume_fraction
1221
In calculate_perturbation_density
1222
Exiting calculate_momentum_diagnostics
1223
Entering get_velocity_options
1224
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1225
Halo nodes are consistent with trailing receive ordering
1226
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1227
Halo nodes are consistent with trailing receive ordering
1228
Entering construct_momentum_cg
1229
Inside wind_forcing
1230
Entering advance_velocity
1231
Inside setup_ksp_from_options
1232
Assembling RHS.
1233
RHS assembly completed.
1234
Assembling initial guess.
1235
Initial guess assembly completed.
1236
Entering solver.
1237
Out of solver.
1238
Entering finalise_state
1239
In calculate_diagnostic_variables
1240
In calculate_perturbation_density
1241
In calculate_perturbation_density
1242
Exiting calculate_diagnostic_variables
1243
In calculate_diagnostic_variables
1244
Exiting calculate_diagnostic_variables
1245
In write_diagnostics
1246
Registered diagnostics:
1247
In write_detectors
1248
In set_dirichlet_consistent
1249
********************
1250
*** NEW TIMESTEP ***
1251
********************
1252
Current simulation time: 30.000000000000000
1253
Timestep number: 3
1254
Timestep size (dt): 15.000000000000000
1255
In set_boundary_conditions
1256
In set_prescribed_field_values
1257
In enforce_discrete_properties
1258
Exiting enforce_discrete_properties
1259
###################
1260
Start of another nonlinear iteration; ITS,nonlinear_iterations= 1 2
1261
###################
1262
Considering scalar field Density in state Fluid
1263
Finished field Density in state Fluid
1264
Considering scalar field Temperature in state Fluid
1265
In solve_field_equation_cg
1266
In assemble_advection_diffusion_cg
1267
Exiting assemble_advection_diffusion_cg
1268
Assembling matrix.
1269
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1270
Halo nodes are consistent with trailing receive ordering
1271
Matrix assembly completed.
1272
Inside setup_ksp_from_options
1273
Assembling RHS.
1274
RHS assembly completed.
1275
Assembling initial guess.
1276
Initial guess assembly completed.
1277
Entering solver.
1278
Out of solver.
1279
Exiting solve_field_equation_cg
1280
Finished field Temperature in state Fluid
1281
Considering scalar field Salinity in state Fluid
1282
In solve_field_equation_cg
1283
In assemble_advection_diffusion_cg
1284
Exiting assemble_advection_diffusion_cg
1285
Assembling matrix.
1286
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1287
Halo nodes are consistent with trailing receive ordering
1288
Matrix assembly completed.
1289
Inside setup_ksp_from_options
1290
Assembling RHS.
1291
RHS assembly completed.
1292
Assembling initial guess.
1293
Initial guess assembly completed.
1294
Entering solver.
1295
Out of solver.
1296
Exiting solve_field_equation_cg
1297
Finished field Salinity in state Fluid
1298
Considering scalar field PerturbationDensity in state Fluid
1299
Finished field PerturbationDensity in state Fluid
1300
Considering scalar field CFLNumber in state Fluid
1301
Finished field CFLNumber in state Fluid
1302
Considering scalar field DistanceToTop in state Fluid
1303
Finished field DistanceToTop in state Fluid
1304
Considering scalar field DistanceToBottom in state Fluid
1305
Finished field DistanceToBottom in state Fluid
1306
Considering scalar field GLSTurbulentKineticEnergy in state Fluid
1307
In gls_tke
1308
Calculating GLS stability functions
1309
Calculating BCs
1310
In assemble_advectiondiffusion_m_cv
1311
In find_upwind_values
1312
In calculate_all_upwind_project
1313
Exiting calculate_all_upwind_project
1314
Exiting find_upwind_values
1315
Exiting assemble_advectiondiffusion_m_cv
1316
In assemble_field_eqn_cv
1317
Exiting assemble_field_eqn_cv
1318
Assembling matrix.
1319
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1320
Halo nodes are consistent with trailing receive ordering
1321
Matrix assembly completed.
1322
Inside setup_ksp_from_options
1323
Assembling RHS.
1324
RHS assembly completed.
1325
Assembling initial guess.
1326
Initial guess assembly completed.
1327
Entering solver.
1328
Out of solver.
1329
In assemble_advectiondiffusion_m_cv
1330
In find_upwind_values
1331
In calculate_all_upwind_project
1332
Exiting calculate_all_upwind_project
1333
Exiting find_upwind_values
1334
Exiting assemble_advectiondiffusion_m_cv
1335
In assemble_field_eqn_cv
1336
Exiting assemble_field_eqn_cv
1337
Assembling matrix.
1338
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1339
Halo nodes are consistent with trailing receive ordering
1340
Matrix assembly completed.
1341
Inside setup_ksp_from_options
1342
Assembling RHS.
1343
RHS assembly completed.
1344
Assembling initial guess.
1345
Initial guess assembly completed.
1346
Entering solver.
1347
Out of solver.
1348
In assemble_advectiondiffusion_m_cv
1349
In find_upwind_values
1350
In calculate_all_upwind_project
1351
Exiting calculate_all_upwind_project
1352
Exiting find_upwind_values
1353
Exiting assemble_advectiondiffusion_m_cv
1354
In assemble_field_eqn_cv
1355
Exiting assemble_field_eqn_cv
1356
Assembling matrix.
1357
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1358
Halo nodes are consistent with trailing receive ordering
1359
Matrix assembly completed.
1360
Inside setup_ksp_from_options
1361
Assembling RHS.
1362
RHS assembly completed.
1363
Assembling initial guess.
1364
Initial guess assembly completed.
1365
Entering solver.
1366
Out of solver.
1367
Finished field GLSTurbulentKineticEnergy in state Fluid
1368
Considering scalar field GLSGenericSecondQuantity in state Fluid
1369
In gls_psi
1370
In assemble_advectiondiffusion_m_cv
1371
In find_upwind_values
1372
In calculate_all_upwind_project
1373
Exiting calculate_all_upwind_project
1374
Exiting find_upwind_values
1375
Exiting assemble_advectiondiffusion_m_cv
1376
In assemble_field_eqn_cv
1377
Exiting assemble_field_eqn_cv
1378
Assembling matrix.
1379
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1380
Halo nodes are consistent with trailing receive ordering
1381
Matrix assembly completed.
1382
Inside setup_ksp_from_options
1383
Assembling RHS.
1384
RHS assembly completed.
1385
Assembling initial guess.
1386
Initial guess assembly completed.
1387
Entering solver.
1388
Out of solver.
1389
In assemble_advectiondiffusion_m_cv
1390
In find_upwind_values
1391
In calculate_all_upwind_project
1392
Exiting calculate_all_upwind_project
1393
Exiting find_upwind_values
1394
Exiting assemble_advectiondiffusion_m_cv
1395
In assemble_field_eqn_cv
1396
Exiting assemble_field_eqn_cv
1397
Assembling matrix.
1398
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1399
Halo nodes are consistent with trailing receive ordering
1400
Matrix assembly completed.
1401
Inside setup_ksp_from_options
1402
Assembling RHS.
1403
RHS assembly completed.
1404
Assembling initial guess.
1405
Initial guess assembly completed.
1406
Entering solver.
1407
Out of solver.
1408
In assemble_advectiondiffusion_m_cv
1409
In find_upwind_values
1410
In calculate_all_upwind_project
1411
Exiting calculate_all_upwind_project
1412
Exiting find_upwind_values
1413
Exiting assemble_advectiondiffusion_m_cv
1414
In assemble_field_eqn_cv
1415
Exiting assemble_field_eqn_cv
1416
Assembling matrix.
1417
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1418
Halo nodes are consistent with trailing receive ordering
1419
Matrix assembly completed.
1420
Inside setup_ksp_from_options
1421
Assembling RHS.
1422
RHS assembly completed.
1423
Assembling initial guess.
1424
Initial guess assembly completed.
1425
Entering solver.
1426
Out of solver.
1427
Finished field GLSGenericSecondQuantity in state Fluid
1428
In gls_diffusivity
1429
Entering solve_momentum
1430
Entering get_pressure_options
1431
Entering get_phase_submaterials
1432
Number of sub-materials = 1
1433
Exiting get_phase_submaterials
1434
Entering calculate_momentum_diagnostics
1435
Entering calculate_diagnostic_phase_volume_fraction
1436
Exiting calculate_diagnostic_phase_volume_fraction
1437
In calculate_perturbation_density
1438
Exiting calculate_momentum_diagnostics
1439
Entering get_velocity_options
1440
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1441
Halo nodes are consistent with trailing receive ordering
1442
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1443
Halo nodes are consistent with trailing receive ordering
1444
Entering construct_momentum_cg
1445
Inside wind_forcing
1446
Entering advance_velocity
1447
Inside setup_ksp_from_options
1448
Assembling RHS.
1449
RHS assembly completed.
1450
Assembling initial guess.
1451
Initial guess assembly completed.
1452
Entering solver.
1453
Out of solver.
1454
Entering finalise_state
1455
###################
1456
Start of another nonlinear iteration; ITS,nonlinear_iterations= 2 2
1457
###################
1458
Considering scalar field Density in state Fluid
1459
Finished field Density in state Fluid
1460
Considering scalar field Temperature in state Fluid
1461
In solve_field_equation_cg
1462
In assemble_advection_diffusion_cg
1463
Exiting assemble_advection_diffusion_cg
1464
Assembling matrix.
1465
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1466
Halo nodes are consistent with trailing receive ordering
1467
Matrix assembly completed.
1468
Inside setup_ksp_from_options
1469
Assembling RHS.
1470
RHS assembly completed.
1471
Assembling initial guess.
1472
Initial guess assembly completed.
1473
Entering solver.
1474
Out of solver.
1475
Exiting solve_field_equation_cg
1476
Finished field Temperature in state Fluid
1477
Considering scalar field Salinity in state Fluid
1478
In solve_field_equation_cg
1479
In assemble_advection_diffusion_cg
1480
Exiting assemble_advection_diffusion_cg
1481
Assembling matrix.
1482
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1483
Halo nodes are consistent with trailing receive ordering
1484
Matrix assembly completed.
1485
Inside setup_ksp_from_options
1486
Assembling RHS.
1487
RHS assembly completed.
1488
Assembling initial guess.
1489
Initial guess assembly completed.
1490
Entering solver.
1491
Out of solver.
1492
Exiting solve_field_equation_cg
1493
Finished field Salinity in state Fluid
1494
Considering scalar field PerturbationDensity in state Fluid
1495
Finished field PerturbationDensity in state Fluid
1496
Considering scalar field CFLNumber in state Fluid
1497
Finished field CFLNumber in state Fluid
1498
Considering scalar field DistanceToTop in state Fluid
1499
Finished field DistanceToTop in state Fluid
1500
Considering scalar field DistanceToBottom in state Fluid
1501
Finished field DistanceToBottom in state Fluid
1502
Considering scalar field GLSTurbulentKineticEnergy in state Fluid
1503
In gls_tke
1504
Calculating GLS stability functions
1505
Calculating BCs
1506
In assemble_advectiondiffusion_m_cv
1507
In find_upwind_values
1508
In calculate_all_upwind_project
1509
Exiting calculate_all_upwind_project
1510
Exiting find_upwind_values
1511
Exiting assemble_advectiondiffusion_m_cv
1512
In assemble_field_eqn_cv
1513
Exiting assemble_field_eqn_cv
1514
Assembling matrix.
1515
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1516
Halo nodes are consistent with trailing receive ordering
1517
Matrix assembly completed.
1518
Inside setup_ksp_from_options
1519
Assembling RHS.
1520
RHS assembly completed.
1521
Assembling initial guess.
1522
Initial guess assembly completed.
1523
Entering solver.
1524
Out of solver.
1525
In assemble_advectiondiffusion_m_cv
1526
In find_upwind_values
1527
In calculate_all_upwind_project
1528
Exiting calculate_all_upwind_project
1529
Exiting find_upwind_values
1530
Exiting assemble_advectiondiffusion_m_cv
1531
In assemble_field_eqn_cv
1532
Exiting assemble_field_eqn_cv
1533
Assembling matrix.
1534
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1535
Halo nodes are consistent with trailing receive ordering
1536
Matrix assembly completed.
1537
Inside setup_ksp_from_options
1538
Assembling RHS.
1539
RHS assembly completed.
1540
Assembling initial guess.
1541
Initial guess assembly completed.
1542
Entering solver.
1543
Out of solver.
1544
In assemble_advectiondiffusion_m_cv
1545
In find_upwind_values
1546
In calculate_all_upwind_project
1547
Exiting calculate_all_upwind_project
1548
Exiting find_upwind_values
1549
Exiting assemble_advectiondiffusion_m_cv
1550
In assemble_field_eqn_cv
1551
Exiting assemble_field_eqn_cv
1552
Assembling matrix.
1553
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1554
Halo nodes are consistent with trailing receive ordering
1555
Matrix assembly completed.
1556
Inside setup_ksp_from_options
1557
Assembling RHS.
1558
RHS assembly completed.
1559
Assembling initial guess.
1560
Initial guess assembly completed.
1561
Entering solver.
1562
Out of solver.
1563
Finished field GLSTurbulentKineticEnergy in state Fluid
1564
Considering scalar field GLSGenericSecondQuantity in state Fluid
1565
In gls_psi
1566
In assemble_advectiondiffusion_m_cv
1567
In find_upwind_values
1568
In calculate_all_upwind_project
1569
Exiting calculate_all_upwind_project
1570
Exiting find_upwind_values
1571
Exiting assemble_advectiondiffusion_m_cv
1572
In assemble_field_eqn_cv
1573
Exiting assemble_field_eqn_cv
1574
Assembling matrix.
1575
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1576
Halo nodes are consistent with trailing receive ordering
1577
Matrix assembly completed.
1578
Inside setup_ksp_from_options
1579
Assembling RHS.
1580
RHS assembly completed.
1581
Assembling initial guess.
1582
Initial guess assembly completed.
1583
Entering solver.
1584
Out of solver.
1585
In assemble_advectiondiffusion_m_cv
1586
In find_upwind_values
1587
In calculate_all_upwind_project
1588
Exiting calculate_all_upwind_project
1589
Exiting find_upwind_values
1590
Exiting assemble_advectiondiffusion_m_cv
1591
In assemble_field_eqn_cv
1592
Exiting assemble_field_eqn_cv
1593
Assembling matrix.
1594
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1595
Halo nodes are consistent with trailing receive ordering
1596
Matrix assembly completed.
1597
Inside setup_ksp_from_options
1598
Assembling RHS.
1599
RHS assembly completed.
1600
Assembling initial guess.
1601
Initial guess assembly completed.
1602
Entering solver.
1603
Out of solver.
1604
In assemble_advectiondiffusion_m_cv
1605
In find_upwind_values
1606
In calculate_all_upwind_project
1607
Exiting calculate_all_upwind_project
1608
Exiting find_upwind_values
1609
Exiting assemble_advectiondiffusion_m_cv
1610
In assemble_field_eqn_cv
1611
Exiting assemble_field_eqn_cv
1612
Assembling matrix.
1613
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1614
Halo nodes are consistent with trailing receive ordering
1615
Matrix assembly completed.
1616
Inside setup_ksp_from_options
1617
Assembling RHS.
1618
RHS assembly completed.
1619
Assembling initial guess.
1620
Initial guess assembly completed.
1621
Entering solver.
1622
Out of solver.
1623
Finished field GLSGenericSecondQuantity in state Fluid
1624
In gls_diffusivity
1625
Entering solve_momentum
1626
Entering get_pressure_options
1627
Entering get_phase_submaterials
1628
Number of sub-materials = 1
1629
Exiting get_phase_submaterials
1630
Entering calculate_momentum_diagnostics
1631
Entering calculate_diagnostic_phase_volume_fraction
1632
Exiting calculate_diagnostic_phase_volume_fraction
1633
In calculate_perturbation_density
1634
Exiting calculate_momentum_diagnostics
1635
Entering get_velocity_options
1636
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1637
Halo nodes are consistent with trailing receive ordering
1638
Checking nodes in halo CoordinateMeshLevel1Halo for consistency with trailing receive ordering
1639
Halo nodes are consistent with trailing receive ordering
1640
Entering construct_momentum_cg
1641
Inside wind_forcing
1642
Entering advance_velocity
1643
Inside setup_ksp_from_options
1644
Assembling RHS.
1645
RHS assembly completed.
1646
Assembling initial guess.
1647
Initial guess assembly completed.
1648
Entering solver.
1649
Out of solver.
1650
Entering finalise_state
1651
In calculate_diagnostic_variables
1652
In calculate_perturbation_density
1653
In calculate_perturbation_density
1654
Exiting calculate_diagnostic_variables
1655
In calculate_diagnostic_variables
1656
Exiting calculate_diagnostic_variables
1657
In write_diagnostics
1658
Registered diagnostics:
1659
In write_detectors
1660
In set_dirichlet_consistent
1661
Finish time reached
1662
In write_state
1663
In vtk_write_state_new_options
1664
Exiting vtk_write_state_new_options
1665
Exiting write_state
1666
Cleaning up GLS variables
1667
Cleaning up GLS surface variables
1668
Finished gls_cleanup
1669
Printing references before final deallocation
1670
Printing out all currently allocated references:
1671
mesh_type VelocityMeshDGSurfaceMesh has reference count 1
1672
and id 22
1673
csr_sparsity VelocityMeshVelocityMeshSparsity has reference count 1
1674
and id 5
1675
scalar_field VelocityMeshLumpedMass has reference count 1
1676
and id 119
1677
scalar_field Time has reference count 1
1678
and id 94
1679
vector_field GridVelocity has reference count 1
1680
and id 24
1681
scalar_field VelocityBuoyancyDensity has reference count 1
1682
and id 93
1683
vector_field NonlinearVelocity has reference count 1
1684
and id 23
1685
vector_field IteratedVelocity has reference count 1
1686
and id 22
1687
vector_field OldVelocity has reference count 1
1688
and id 21
1689
scalar_field IteratedGLSVerticalDiffusivity has reference count 1
1690
and id 92
1691
scalar_field OldGLSVerticalDiffusivity has reference count 1
1692
and id 91
1693
scalar_field IteratedGLSVerticalViscosity has reference count 1
1694
and id 90
1695
scalar_field OldGLSVerticalViscosity has reference count 1
1696
and id 89
1697
scalar_field IteratedGLSWallFunction has reference count 1
1698
and id 88
1699
scalar_field OldGLSWallFunction has reference count 1
1700
and id 87
1701
scalar_field IteratedGLSAbsorption2 has reference count 1
1702
and id 86
1703
scalar_field OldGLSAbsorption2 has reference count 1
1704
and id 85
1705
scalar_field IteratedGLSAbsorption1 has reference count 1
1706
and id 84
1707
scalar_field OldGLSAbsorption1 has reference count 1
1708
and id 83
1709
scalar_field IteratedGLSSource2 has reference count 1
1710
and id 82
1711
scalar_field OldGLSSource2 has reference count 1
1712
and id 81
1713
scalar_field IteratedGLSSource1 has reference count 1
1714
and id 80
1715
scalar_field OldGLSSource1 has reference count 1
1716
and id 79
1717
scalar_field IteratedGLSStabilityFunctionSH has reference count 1
1718
and id 78
1719
scalar_field OldGLSStabilityFunctionSH has reference count 1
1720
and id 77
1721
scalar_field IteratedGLSStabilityFunctionSM has reference count 1
1722
and id 76
1723
scalar_field OldGLSStabilityFunctionSM has reference count 1
1724
and id 75
1725
scalar_field IteratedGLSDissipationEpsilon has reference count 1
1726
and id 74
1727
scalar_field OldGLSDissipationEpsilon has reference count 1
1728
and id 73
1729
scalar_field IteratedGLSBuoyancyProduction has reference count 1
1730
and id 72
1731
scalar_field OldGLSBuoyancyProduction has reference count 1
1732
and id 71
1733
scalar_field IteratedGLSShearProduction has reference count 1
1734
and id 70
1735
scalar_field OldGLSShearProduction has reference count 1
1736
and id 69
1737
scalar_field IteratedGLSVelocityShear has reference count 1
1738
and id 68
1739
scalar_field OldGLSVelocityShear has reference count 1
1740
and id 67
1741
scalar_field IteratedGLSBuoyancyFrequency has reference count 1
1742
and id 66
1743
scalar_field OldGLSBuoyancyFrequency has reference count 1
1744
and id 65
1745
scalar_field IteratedGLSLengthScale has reference count 1
1746
and id 64
1747
scalar_field OldGLSLengthScale has reference count 1
1748
and id 63
1749
scalar_field OldGLSGenericSecondQuantityAbsorption has reference count 1
1750
and id 62
1751
scalar_field OldGLSGenericSecondQuantitySource has reference count 1
1752
and id 61
1753
scalar_field IteratedGLSGenericSecondQuantity has reference count 1
1754
and id 60
1755
scalar_field OldGLSGenericSecondQuantity has reference count 1
1756
and id 59
1757
scalar_field OldGLSTurbulentKineticEnergyAbsorption has reference count 1
1758
and id 58
1759
scalar_field OldGLSTurbulentKineticEnergySource has reference count 1
1760
and id 57
1761
scalar_field IteratedGLSTurbulentKineticEnergy has reference count 1
1762
and id 56
1763
scalar_field OldGLSTurbulentKineticEnergy has reference count 1
1764
and id 55
1765
scalar_field IteratedCFLNumber has reference count 1
1766
and id 54
1767
scalar_field OldCFLNumber has reference count 1
1768
and id 53
1769
scalar_field IteratedPerturbationDensity has reference count 1
1770
and id 52
1771
scalar_field OldPerturbationDensity has reference count 1
1772
and id 51
1773
scalar_field IteratedSalinity has reference count 1
1774
and id 50
1775
scalar_field OldSalinity has reference count 1
1776
and id 49
1777
scalar_field IteratedTemperature has reference count 1
1778
and id 48
1779
scalar_field OldTemperature has reference count 1
1780
and id 47
1781
scalar_field IteratedDensity has reference count 1
1782
and id 46
1783
scalar_field OldDensity has reference count 1
1784
and id 45
1785
scalar_field value has reference count 1
1786
and id 40
1787
scalar_field value has reference count 1
1788
and id 39
1789
mesh_type psi_bottom_boundaryMesh has reference count 2
1790
and id 13
1791
mesh_type tke_bottom_boundaryMesh has reference count 2
1792
and id 12
1793
scalar_field value has reference count 1
1794
and id 38
1795
scalar_field value has reference count 1
1796
and id 37
1797
mesh_type psi_top_boundaryMesh has reference count 2
1798
and id 11
1799
mesh_type tke_top_boundaryMesh has reference count 2
1800
and id 10
1801
vector_field WindSurfaceField has reference count 1
1802
and id 15
1803
mesh_type BulkForcingVelocityMesh has reference count 2
1804
and id 9
1805
vector_field value has reference count 1
1806
and id 13
1807
mesh_type topbottomMesh has reference count 2
1808
and id 8
1809
vector_field value has reference count 1
1810
and id 11
1811
mesh_type lateralMesh has reference count 2
1812
and id 7
1813
scalar_field value has reference count 1
1814
and id 36
1815
mesh_type BulkForcingSalinityMesh has reference count 2
1816
and id 6
1817
scalar_field value has reference count 1
1818
and id 35
1819
mesh_type BulkForcingTemperatureMesh has reference count 2
1820
and id 5
1821
tensor_field GLSEddyDiffusivityKH has reference count 3
1822
and id 7
1823
tensor_field GLSEddyViscosityKM has reference count 1
1824
and id 6
1825
tensor_field GLSBackgroundDiffusivity has reference count 1
1826
and id 5
1827
tensor_field GLSBackgroundViscosity has reference count 1
1828
and id 4
1829
scalar_field GLSVerticalDiffusivity has reference count 1
1830
and id 28
1831
scalar_field GLSVerticalViscosity has reference count 1
1832
and id 27
1833
scalar_field GLSWallFunction has reference count 1
1834
and id 26
1835
scalar_field GLSAbsorption2 has reference count 1
1836
and id 25
1837
scalar_field GLSAbsorption1 has reference count 1
1838
and id 24
1839
scalar_field GLSSource2 has reference count 1
1840
and id 23
1841
scalar_field GLSSource1 has reference count 1
1842
and id 22
1843
scalar_field GLSStabilityFunctionSH has reference count 1
1844
and id 21
1845
scalar_field GLSStabilityFunctionSM has reference count 1
1846
and id 20
1847
scalar_field GLSDissipationEpsilon has reference count 1
1848
and id 19
1849
scalar_field GLSBuoyancyProduction has reference count 1
1850
and id 18
1851
scalar_field GLSShearProduction has reference count 1
1852
and id 17
1853
scalar_field GLSVelocityShear has reference count 1
1854
and id 16
1855
scalar_field GLSBuoyancyFrequency has reference count 1
1856
and id 15
1857
scalar_field GLSLengthScale has reference count 1
1858
and id 14
1859
tensor_field GLSGenericSecondQuantityDiffusivity has reference count 1
1860
and id 3
1861
scalar_field GLSGenericSecondQuantityAbsorption has reference count 2
1862
and id 13
1863
scalar_field GLSGenericSecondQuantitySource has reference count 2
1864
and id 12
1865
scalar_field GLSGenericSecondQuantity has reference count 1
1866
and id 11
1867
tensor_field GLSTurbulentKineticEnergyDiffusivity has reference count 1
1868
and id 2
1869
scalar_field GLSTurbulentKineticEnergyAbsorption has reference count 2
1870
and id 10
1871
scalar_field GLSTurbulentKineticEnergySource has reference count 2
1872
and id 9
1873
scalar_field GLSTurbulentKineticEnergy has reference count 1
1874
and id 8
1875
vector_field GravityDirection has reference count 3
1876
and id 5
1877
tensor_field Viscosity has reference count 1
1878
and id 1
1879
vector_field VelocityAbsorption has reference count 3
1880
and id 4
1881
vector_field Velocity has reference count 1
1882
and id 3
1883
scalar_field DistanceToBottom has reference count 3
1884
and id 7
1885
scalar_field DistanceToTop has reference count 3
1886
and id 6
1887
scalar_field CFLNumber has reference count 1
1888
and id 5
1889
scalar_field PerturbationDensity has reference count 1
1890
and id 4
1891
scalar_field Salinity has reference count 1
1892
and id 3
1893
scalar_field Temperature has reference count 1
1894
and id 2
1895
scalar_field Density has reference count 1
1896
and id 1
1897
csr_sparsity EEListSparsity has reference count 2
1898
and id 4
1899
csr_sparsity NEListSparsity has reference count 1
1900
and id 3
1901
halo_type CoordinateMeshMaximalElementHalo has reference count 2
1902
and id 3
1903
halo_type CoordinateMeshLevel2Halo has reference count 1
1904
and id 2
1905
halo_type CoordinateMeshLevel1Halo has reference count 3
1906
and id 1
1907
mesh_type SurfaceCoordinateMesh has reference count 1
1908
and id 2
1909
element_type has reference count 12
1910
and id 2
1911
quadrature_type has reference count 2
1912
and id 2
1913
csr_matrix CoordinateMeshFaceList has reference count 1
1914
and id 1
1915
csr_sparsity EEListSparsity has reference count 2
1916
and id 2
1917
csr_sparsity NEListSparsity has reference count 1
1918
and id 1
1919
vector_field Coordinate has reference count 4
1920
and id 1
1921
mesh_type CoordinateMesh has reference count 97
1922
and id 1
1923
element_type has reference count 1
1924
and id 1
1925
quadrature_type has reference count 1
1926
and id 1
1927
Printing references after final deallocation
1928
Printing out all currently allocated references:
1929
There are no references left.
1930
No registered memory in use.
1931
Exited fluids
Loggerhead is a web-based interface for Breezy
Version: 2.0.1