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Viewing changes to collatex/src/main/java/eu/interedition/collatex2/implementation/output/table/RankedGraphBasedAlignmentTable.java

  • Committer: Ronald Haentjens Dekker
  • Date: 2011-02-25 11:15:43 UTC
  • Revision ID: ronald.dekker@huygensinstituut.knaw.nl-20110225111543-76pz2ccgzt5k8a84
[RHD]
- More API cleanups:
- Removed getPosition() method from ICell interface
- Removed getPosition() method from IColumn interface
- Removed getWitnessForSigil method from IVariantGraphVertex interface
- Removed containsWitness(sigil) method from IVariantGraphVertex interface
- Deleted IAlignmentTableVisitor interface... no references anymore
- Deleted IInputPlugin interface... no references anymore

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collatex/src/main/java/eu/interedition/collatex2/implementation/output/table/RankedGraphBasedAlignmentTable.java
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import eu.interedition.collatex2.interfaces.IVariantGraphVertex;
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import eu.interedition.collatex2.interfaces.IWitness;
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//TODO: remove explicit dependency on rankedgraph implementation classes!
 
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//TODO: remove explicit dependency on ranked graph implementation classes!
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//TODO: The maximum dependency is implementation classes of the same package!
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public class RankedGraphBasedAlignmentTable extends BaseAlignmentTable {
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  private final IVariantGraph graph;
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      int rank = nextVertex.getRank();
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//      System.out.println("DEBUG: "+nextVertex.getNormalized()+":"+nextVertex.getRank());
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      if (rank>columns.size()) {
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        addNewColumn(next, nextVertex.getRank());
 
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        addNewColumn(next);
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      } else {
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        columns.get(rank-1).addVertex(next);
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      }
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//    System.out.println("TOTAL number of columns: "+columns.size());
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  }
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  private IColumn addNewColumn(IVariantGraphVertex vertex, int rank) {
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    final IColumn column = new VariantGraphBasedColumn(vertex, rank);
 
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  private IColumn addNewColumn(IVariantGraphVertex vertex) {
 
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    final IColumn column = new VariantGraphBasedColumn(vertex);
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    columns.add(column);
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    return column;
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  }