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Viewing changes to src/pdisco/app/browser/msengineresultspage.py

  • Committer: Danny Navarro
  • Date: 2008-04-10 15:23:48 UTC
  • Revision ID: danny@arretxe.local-20080410152348-y8da9db5kpsl5tjw
fixed msengineresults creation

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Lines of Context:
src/pdisco/app/browser/msengineresultspage.py
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    fields = field.Fields(IMsEngineResults)
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    def create(self, data):
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        msmergedresults = MsEngineResults()
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        msmergedresults.format = data['format']
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        msmergedresults.results_file = data['results_file']
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        msmergedresults.exp_run = data['exp_run']
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        parser = queryAdapter(msmergedresults, IParser, 'tandem')
 
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        msengineresults = MsEngineResults()
 
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        msengineresults.format = data['format']
 
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        msengineresults.results_file = data['results_file']
 
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        parser = queryAdapter(msengineresults, IParser, 'tandem')
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        psms = parser.parse()
 
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        msmergedresults = MsMergedResults
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        msmergedresults.PSMs = psms
 
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        msmergedresults.exp_run = data['exp_run']
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        return msmergedresults
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    def add(self, msmergedresults):
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# No need of namechooser for now:
 
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#        namechooser = INameChooser(self.context)
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#        name = namechooser.chooseName('run', msmergedresults)
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        self.mr_name = msmergedresults.exp_run.replace(' ', '')
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        self.context[self.mr_name] = msmergedresults
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#        psms = PSMs()
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#        Find if there is already a spectrum in the container
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#        peptides = Peptides()
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#        Create peptides here based on self.peptides
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#        msmergedresults['peptides'] = peptides
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#        self.run_name = msmergedresults.exp_run
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#        return msmergedresults
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    def nextURL(self):