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Viewing changes to src/atom_map.cpp

Committer: kloss
Date: 2017-11-29 17:39:00 UTC
Revision ID: git-v1:84ba3d76a050e741fb5291d0845a0896fe718ed2

release version 3.8.0 on 2017-11-29_18-39-00

files added:
doc/_images/fix_sph_pressure_abs.jpg

doc/_images/fix_sph_pressure_rel.jpg

doc/_images/fix_sph_pressure_tait_eq1.jpg

doc/_images/fix_sph_pressure_tait_eq2.jpg

doc/_static/fonts/fontawesome-webfont.woff2

doc/compute_erotate_superquadric.html

doc/compute_erotate_superquadric.txt

doc/fix_nve_superquadric.html

doc/fix_nve_superquadric.txt

doc/fix_particletemplate_superquadric.html

doc/fix_particletemplate_superquadric.txt

doc/gran_surface_superquadric.html

doc/gran_surface_superquadric.txt

examples/LIGGGHTS/Tutorials_public/superquadric

examples/LIGGGHTS/Tutorials_public/superquadric/in.particle_particle

lib/smd

lib/smd/.gitignore

lib/smd/Install.py

lib/smd/Makefile.lammps

lib/smd/README

python/liggghts.py

release-notes.txt

src/MAKE/Makefile.user_default_patch_1.0

src/MAKE/Makefile.user_default_patch_1.1

src/MAKE/Makefile.user_default_patch_1.2

src/atom_vec_convexhull.h

src/atom_vec_full.cpp

src/atom_vec_full.h

src/atom_vec_molecular.cpp

src/atom_vec_molecular.h

src/atom_vec_superquadric.cpp

src/atom_vec_superquadric.h

src/atom_vec_tri.cpp

src/atom_vec_tri.h

src/bond_harmonic.cpp

src/bond_harmonic.h

src/compute_contact_atom_gran.cpp

src/compute_contact_atom_gran.h

src/compute_erotate_asphere.cpp

src/compute_erotate_asphere.h

src/compute_erotate_superquadric.cpp

src/compute_erotate_superquadric.h

src/domain_definitions.h

src/dump_mesh_vtm.cpp

src/dump_mesh_vtm.h

src/fix_mixing.h

src/fix_nve_asphere.cpp

src/fix_nve_asphere.h

src/fix_nve_asphere_base.cpp

src/fix_nve_asphere_base.h

src/fix_nve_asphere_noforce.cpp

src/fix_nve_asphere_noforce.h

src/fix_nve_line.cpp

src/fix_nve_line.h

src/fix_nve_superquadric.cpp

src/fix_nve_superquadric.h

src/fix_template_superquadric.cpp

src/fix_template_superquadric.h

src/genAutoExamplesWhitelist.sh

src/info.cpp

src/info.h

src/math_extra_liggghts_nonspherical.cpp

src/math_extra_liggghts_nonspherical.h

src/math_extra_liggghts_superquadric.cpp

src/math_extra_liggghts_superquadric.h

src/normal_model_edinburgh.h

src/normal_model_edinburgh_stiffness.h

src/normal_model_luding.h

src/normal_model_thornton_ning.h

src/pair_line_lj.cpp

src/pair_line_lj.h

src/particleToInsertSuperquadric.cpp

src/particleToInsertSuperquadric.h

src/rolling_model_luding.h

src/superquadric.cpp

src/superquadric.h

src/surface_model_superquadric.h

src/tangential_model_luding_tn.h

src/tri_mesh_I_superquadric.h

files removed:
doc/_images/box.jpg

doc/_images/box_inverse.jpg

doc/_images/rotate.jpg

doc/_images/transform.jpg

doc/fix_sph_pressure_eq1.gif

doc/fix_sph_pressure_eq2.gif

doc/fix_sph_pressure_eq3.gif

doc/pair_sph.html

doc/pair_sph.txt

doc/pair_sph_eq1.gif

doc/pair_sph_eq2.gif

doc/pair_sph_eq3.gif

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doc/pair_sph_eq7.gif

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python/lammps.py

src/ASPHERE

src/ASPHERE/compute_erotate_asphere.cpp

src/ASPHERE/compute_erotate_asphere.h

src/ASPHERE/fix_nve_asphere.cpp

src/ASPHERE/fix_nve_asphere.h

src/ASPHERE/fix_nve_asphere_noforce.cpp

src/ASPHERE/fix_nve_asphere_noforce.h

src/ASPHERE/fix_nve_line.cpp

src/ASPHERE/fix_nve_line.h

src/ASPHERE/pair_line_lj.cpp

src/ASPHERE/pair_line_lj.h

src/RIGID

src/RIGID/fix_rigid.cpp

src/RIGID/fix_rigid.h

src/compute_surface.cpp

src/compute_surface.h

files modified:
doc/Manual.html

doc/Section_commands.html

doc/Section_commands.txt

doc/Section_commands_LAMMPS.html

doc/Section_commands_LAMMPS.txt

doc/Section_errors.html

doc/Section_errors.txt

doc/Section_gran_models.html

doc/Section_gran_models.txt

doc/Section_howto.html

doc/Section_howto.txt

doc/Section_input_script.html

doc/Section_input_script.txt

doc/Section_intro.html

doc/Section_intro.txt

doc/Section_mesh_modules.html

doc/Section_modify.html

doc/Section_modify.txt

doc/Section_packages.html

doc/Section_packages.txt

doc/Section_python.html

doc/Section_python.txt

doc/Section_start.html

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doc/_downloads/yi_jing_01_chien.jpg

doc/_images/screen_mobile.png

doc/_images/yi_jing_01_chien.jpg

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doc/_static/css/theme.css.map

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doc/_static/pygments.css

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doc/bond_harmonic.html

doc/bond_hybrid.html

doc/bond_none.html

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doc/change_box.html

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doc/compute_bond_local.html

doc/compute_centro_atom.html

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doc/compute_cna_atom.html

doc/compute_com.html

doc/compute_com_molecule.html

doc/compute_contact_atom.html

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doc/compute_coord_gran.html

doc/compute_coord_gran.txt

doc/compute_displace_atom.html

doc/compute_erotate.html

doc/compute_erotate_asphere.html

doc/compute_erotate_multisphere.html

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doc/compute_gyration.html

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doc/compute_pe_atom.html

doc/compute_pressure.html

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doc/compute_property_local.html

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doc/compute_reduce.html

doc/compute_rigid.html

doc/compute_rigid.txt

doc/compute_slice.html

doc/compute_stress_atom.html

doc/compute_voronoi_atom.html

doc/create_atoms.html

doc/create_box.html

doc/delete_atoms.html

doc/delete_bonds.html

doc/dielectric.html

doc/dimension.html

doc/displace_atoms.html

doc/dump.html

doc/dump.txt

doc/dump_custom_vtk.html

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doc/dump_image.html

doc/dump_local_gran_vtk.html

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doc/echo.html

doc/fix.html

doc/fix_adapt.html

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doc/fix_ave_correlate.html

doc/fix_ave_euler.html

doc/fix_ave_histo.html

doc/fix_ave_spatial.html

doc/fix_ave_time.html

doc/fix_aveforce.html

doc/fix_bond_break.html

doc/fix_bond_create.html

doc/fix_box_relax.html

doc/fix_buoyancy.html

doc/fix_check_timestep_gran.html

doc/fix_continuum_weighted.html

doc/fix_couple_cfd.html

doc/fix_couple_cfd.txt

doc/fix_deform.html

doc/fix_drag.html

doc/fix_dt_reset.html

doc/fix_efield.html

doc/fix_enforce2d.html

doc/fix_external.html

doc/fix_freeze.html

doc/fix_gravity.html

doc/fix_heat_gran_conduction.html

doc/fix_insert_pack.html

doc/fix_insert_rate_region.html

doc/fix_insert_rate_region.txt

doc/fix_insert_stream.html

doc/fix_lineforce.html

doc/fix_massflow_mesh.html

doc/fix_massflow_mesh_sieve.html

doc/fix_mesh_surface.html

doc/fix_modify.html

doc/fix_momentum.html

doc/fix_move.html

doc/fix_move_mesh.html

doc/fix_multicontact_halfspace.html

doc/fix_multisphere.html

doc/fix_multisphere.txt

doc/fix_multisphere_break.html

doc/fix_multisphere_break.txt

doc/fix_nve.html

doc/fix_nve_asphere.html

doc/fix_nve_asphere.txt

doc/fix_nve_asphere_noforce.html

doc/fix_nve_asphere_noforce.txt

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doc/fix_nve_line.html

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doc/fix_property_atom_region_tracer_time.html

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doc/fix_rigid.txt

doc/fix_setforce.html

doc/fix_sph_density_continuity.html

doc/fix_sph_density_corr.html

doc/fix_sph_density_summation.html

doc/fix_sph_pressure.html *

doc/fix_sph_pressure.txt *

doc/fix_spring.html

doc/fix_spring_rg.html

doc/fix_spring_self.html

doc/fix_store_force.html

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doc/fix_viscous.html

doc/fix_wall_gran.html

doc/fix_wall_gran.txt

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doc/gran_cohesion_easo_capillary_viscous.html

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doc/gran_rolling_friction_epsd2.html

doc/gran_rolling_friction_epsd3.html

doc/gran_surface_multicontact.html

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doc/gran_tangential_history.html

doc/gran_tangential_history.txt

doc/gran_tangential_no_history.html

doc/group.html

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doc/install_liggghts_windows.html

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python/examples/pizza/gl.py *

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python/examples/pizza/pdbfile.py

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python/examples/viz_atomeye.py

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python/examples/viz_pymol.py

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src/.gitignore

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src/MAKE/Makefile.auto

src/MAKE/Makefile.user_default

src/Make.sh

src/Makefile

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src/PASCAL/fix_pascal_couple.cpp

src/angle.cpp

src/angle_hybrid.cpp

src/atom.cpp

src/atom.h

src/atom_map.cpp

src/atom_vec.cpp

src/atom_vec.h

src/atom_vec_line.cpp

src/atom_vec_sph.cpp

src/atom_vec_sph_var.cpp

src/atom_vec_sphere.cpp

src/bond_hybrid.cpp

src/cfd_datacoupling.cpp

src/cfd_datacoupling_file.cpp

src/cfd_datacoupling_mpi.cpp

src/cfd_regionmodel_none.cpp

src/change_box.cpp

src/cleanAllNonSpherical.sh

src/cleanAllParScale.sh

src/cohesion_model_easo_capillary_viscous.h

src/cohesion_model_sjkr.h

src/cohesion_model_sjkr2.h

src/cohesion_model_washino_capillary_viscous.h

src/comm.cpp

src/compute.cpp

src/compute.h

src/compute_bond_local.cpp

src/compute_cluster_atom.cpp

src/compute_cna_atom.cpp

src/compute_contact_atom.cpp

src/compute_coord_atom.cpp

src/compute_displace_atom.cpp

src/compute_group_group.cpp

src/compute_gyration.cpp

src/compute_gyration_molecule.cpp

src/compute_pair_gran_local.cpp

src/compute_pair_gran_local.h

src/compute_property_atom.cpp

src/compute_rdf.cpp

src/compute_rigid.cpp

src/contact_interface.h

src/contact_models.cpp

src/create_atoms.cpp

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src/fix_property_atom_region_tracer.cpp

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src/fix_property_atom_tracer_stream.cpp

src/fix_property_global.cpp

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src/fix_rigid.cpp

src/fix_scalar_transport_equation.cpp

src/fix_sph.cpp

src/fix_sph_density_continuity.cpp

src/fix_sph_density_corr.cpp

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src/fix_sph_pressure.cpp

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src/region_cone.cpp

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src/region_neighbor_list_definitions.h

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src/region_prism.cpp

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src/region_union.cpp

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src/version_liggghts.txt

src/write_restart.cpp

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src/atom_map.cpp

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the GNU General Public License.

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------------------------------------------------------------------------- */

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#include <math.h>

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#include <cmath>

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#include "atom.h"

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#include "comm.h"

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#include "memory.h"

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