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Viewing changes to nipy/pypemodules/FBIRNsource.py

  • Committer: Satrajit Ghosh
  • Date: 2009-07-15 12:44:49 UTC
  • Revision ID: satra@unwarped.home-20090715124449-tw3icmsxyytdqr1y
haha - added some docs and cleaned some code

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nipy/pypemodules/FBIRNsource.py
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import nipy.interfaces as nif
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import glob
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import os
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class FBIRNsource(nif.InterfaceBase):
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    def __init__(self):
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        super(FBIRNsource,self).__init__()
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        self.diskbased = False
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        self.name = 'FBIRNsource'
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        self.log = {}
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        self.inputs['base_dir'] = None
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        self.inputs['subject_id'] = None
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        self.outputs['struct_series'] = None
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        self.outputs['funct_series'] = None
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    def pre_execute(self):
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        pass
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    def execute(self):
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        """Execute the cmd
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        """
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        self.log['returncode'] = 0
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        subjdir = 'mgh-%s.1' % self.inputs['subject_id']
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        struct_path = os.path.join(self.inputs['base_dir'],subjdir,'anat','ds*.nii')
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        funct_path = os.path.join(self.inputs['base_dir'],subjdir,'bold','*','*.nii')
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        self.outputs['struct_series'] = glob.glob(struct_path)
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        self.outputs['funct_series'] = glob.glob(funct_path)       
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    def post_execute(self):
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        # check to see that the output file exists.
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        pass