~reducedmodelling/fluidity/ROM_Non-intrusive-ann : changes

~reducedmodelling/fluidity/ROM_Non-intrusive-ann » Changes from revision 4037

From Revision 3151 to 3132

Rev	Summary	Authors	Date
3151	Fix the calculation of the up vector, including a small hack... Fix the calculation of the up vector, including a small hack for 1d problems (this is no worse than what was there already but you may not get exactly steady geostrophic states on curved 1d surfaces). Added 2 more shallow water tests - the f-sphere test is now activated and also a kelvin wave in the xz-plane just so we have something non-spherical and non-xy plane.	jemma	13 years ago
3150	Add adaptivity into test. This one fails with Zoltan for me. Add adaptivity into test. This one fails with Zoltan for me.	cjc1	13 years ago
3149	Fixed fluidity_option.rnc and .rng to add melting of ice. Fixed fluidity_option.rnc and .rng to add melting of ice.	skimura	13 years ago
3148	Reverting the fluidity_option.rng from 15824 Reverting the fluidity_option.rng from 15824	skimura	13 years ago
3147	This is the first commit to add melting of ice. This is the first commit to add melting of ice. It works and passes all the tests.	skimura	13 years ago
3146	Change the radiation models use of 'neutral particle' to 'pa... Change the radiation models use of 'neutral particle' to 'particle' in all necessary variables (which is why most parts of the radiation model has modifications) Also break the joint association between energy and angle in the schema to make it more generic change test cases as needed	btollit	13 years ago
3145	change an X to a Z to fix radiation unittest change an X to a Z to fix radiation unittest	btollit	13 years ago
3144	tag the radiation tests with 'rad' tag the radiation tests with 'rad' fix a small bug in the radmats read in and change a few comments change the vacuum BC to the more general albedo BC and change the test case as needed also include a particle source BC these will be useful for some simple verification tests as well as a atmosphere radiation model both these required small changes to Boundary_Conditions_From_Options.F90	btollit	13 years ago
3143	Removing the mphase_divergence_free_velocity test from the t... Removing the mphase_divergence_free_velocity test from the trunk for now.	ctj10	13 years ago
3142	Removed the 'transpose' in the call to shape_shape_vector as... Removed the 'transpose' in the call to shape_shape_vector as a result of revision r15787. This should fix the failing mphase_identical_velocities test case on buildbot.	ctj10	13 years ago
3141	Let's try tweaking the KP test a bit. More resolution in the Let's try tweaking the KP test a bit. More resolution in the horizontal, less in the vertical (with an overall reduction in runtime) and take the MLD from the last 6 hours of simulation only	jhill1	13 years ago
3140	Merging branch revisions r15775, r15808, r15810 and r15812 i... Merging branch revisions r15775, r15808, r15810 and r15812 into trunk. Branch now synchronised with the trunk. Summary of branch changes: ------------------------------------------------------------------------ r15812 \| ctj10 \| 2011-03-11 03:12:49 +0000 (Fri, 11 Mar 2011) \| 3 lines Removed the 'transpose' in the call to shape_shape_vector as a result of revision r15787. ------------------------------------------------------------------------ r15810 \| ctj10 \| 2011-03-11 01:28:11 +0000 (Fri, 11 Mar 2011) \| 3 lines - Made sure that the logical variable 'multiphase' always gets initialised in Divergence_Matrix_CG.F90. ------------------------------------------------------------------------ r15808 \| ctj10 \| 2011-03-10 18:21:29 +0000 (Thu, 10 Mar 2011) \| 7 lines - Moved the calculate_sum_velocity_divergence subroutine (from Multiphase.F90 to Diagnostic_Fields_Matrices.F90) to remove a circular dependency. - Added/removed dependencies on Multiphase.o in Makefile.in. - Removed some unused variables. ------------------------------------------------------------------------ r15775 \| ctj10 \| 2011-03-09 03:53:53 +0000 (Wed, 09 Mar 2011) \| 3 lines Changed problem_type from 'fluids' to 'multiphase'.	ctj10	13 years ago
3139	Merging branch revision r15774 into trunk. Merging branch revision r15774 into trunk. Summary of branch changes: ------------------------------------------------------------------------ r15774 \| ctj10 \| 2011-03-09 02:09:08 +0000 (Wed, 09 Mar 2011) \| 5 lines - Added 'solver' options and the 'integrate_divergence_by_parts' option to the SumVelocityDivergence field in the schema. - Added a new (short) test case called 'mphase_divergence_free_velocity' based on the existing 'divergence_free_velocity' test case by Simon Funke.	ctj10	13 years ago
3138	Merging branch revision r15773 into trunk. Merging branch revision r15773 into trunk. Summary of branch changes: ------------------------------------------------------------------------ r15773 \| ctj10 \| 2011-03-09 02:05:50 +0000 (Wed, 09 Mar 2011) \| 3 lines - To calculate SumVelocityDivergence correctly at t=0, we have to call calculate_diagnostic_phase_volume_fraction before copy_to_stored(state,"Old") is called. Otherwise, OldPhaseVolumeFraction will be zero (in the state containing the diagnostic PhaseVolumeFraction) and NonlinearPhaseVolumeFraction will be calculated incorrectly. An 'if' statement has been added to deal with this in Fluids.F90.	ctj10	13 years ago
3137	Merging branch revision r15772 into trunk. Merging branch revision r15772 into trunk. Summary of branch changes: ------------------------------------------------------------------------ r15772 \| ctj10 \| 2011-03-09 02:04:28 +0000 (Wed, 09 Mar 2011) \| 7 lines - If constructed using Momentum_CG.F90 or assemble_divergence_matrix_cg (in Divergence_Matrix_CG.F90), C^T now represents div(vfracu) rather than vfracdiv(u) which was incorrect. - Multiplied through by the NonlinearPhaseVolumeFraction (if multiphase) when integrating the divergence by parts in Momentum_CG.F90 or Divergence_Matrix_CG.F90. - Added dependency on Multiphase.o in assemble/Makefile.in.	ctj10	13 years ago
3136	Merging branch revisions r15698 and r15771 into trunk. Merging branch revisions r15698 and r15771 into trunk. Summary of branch changes: ------------------------------------------------------------------------ r15771 \| ctj10 \| 2011-03-09 02:01:53 +0000 (Wed, 09 Mar 2011) \| 7 lines - Made a right hash of things...committing several fixes to the calculate_sum_velocity_divergence subroutine with help from Cian and Stephan. - Added additional ewrite's to Multiphase.F90. - Changed a SumVelocityDivergence-related FLExit message in Diagnostic_fields_wrapper.F90. ------------------------------------------------------------------------ r15698 \| ctj10 \| 2011-03-02 00:03:32 +0000 (Wed, 02 Mar 2011) \| 3 lines Added a new diagnostic scalar field called 'SumVelocityDivergence' which holds \sum{div(vfrac*u)} (summed up over all phases), calculated by the new subroutine 'calculate_sum_velocity_divergence'.	ctj10	13 years ago
3135	some small changes to the radiation scheme to make it more g... some small changes to the radiation scheme to make it more general with regard to the energy groups sets and angular discretisation	btollit	13 years ago
3134	Improvements to GLS: Improvements to GLS: - K-KL now looks much better after adding more limits on various variables - Adding options to smooth buoyancy frequency and shear velocity. Not that much use, but there anyway - Adding option under adaptivity whereby the timestep will be reset to the minimum timestep under adaptive timestepping after a mesh adapt. This helps smooth out wiggles seen in the GLS simulations with adaptivity	jhill1	13 years ago
3133	change the burgers tests cases to ne consistent with the new... change the burgers tests cases to ne consistent with the newest schemer. Note that only the adjoint tests are affected and the will not pass (yet!) with the current revision.	sf1409	13 years ago
3132	loosening max p and max absorption velocity for natty loosening max p and max absorption velocity for natty	ffm10	13 years ago