~stk-developers/supertree-toolkit/releases

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<string_value lines="1">Morphological and molecular description of new species of squat lobster (Crustacea: Decapoda: Galatheidae) from the Solomon and Fiji Islands (South-West Pacific)</string_value>

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<year>

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<integer_value rank="0">2009</integer_value>

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<string_value lines="1">Zoological Journal of the Linnean Society</string_value>

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<string_value lines="1">1</string_value>

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<string_value lines="1">(Onconida_alaini, ((Paramunida_granulata, ((Paramunida_pronoe, ((Paramunida_thalie, (Paramunida_pictura, Paramunida_labis)), (Paramunida_luminata, (Paramunida_belone, (Paramunida_salai, Paramunida_lophia))))), (Paramunida_stichas, Paramunida_proxima))), (Plesionida_concava, Plesionida_aliena)));</string_value>

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<optimality_criterion name="Neighbour Joining"/>

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<string_value lines="1">(Eumunida_sternomaculata, ((((Munida_mendagnai, (Munida_stia, ((Munida_acantha, (Munida_clinata, ((Munida_leagora, (Munida_taenia, Munida_armilla)), (Munida_distiza, Munida_guttata)))), ((Munida_tyche, (Munida_notata, (Munida_caeli, (Munida_parca, Munida_lailai)))), (Munida_spilota, Munida_proto))))), ((((Munida_zebra, Munida_thoe), (Munida_ommata, (Munida_psylla, Munida_rufiantennulata))), (Munida_tiresias, (Munida_alonsoi, Munida_psamathe))), (Munida_pagesi, (((Munida_rhodonia, Munida_congesta), (Munida_compressa, Munida_rubridigitalis)), (Munida_eclepsis, (Munida_militaris, Munida_rosula)))))), (Munida_gordoae, Munida_leptosyne)), (Munida_rugosa, (Munida_devestiva, (Munida_delicata, Munida_oblongata)))));</string_value>

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<string_value lines="1">(Crosnierita_dicata, ((Agononida_sphecia, Alainius_crosnieri), (Agononida_incerta, (Agononida_marini, (Agononida_procera, (Agononida_isabelensis, Agononida_similis))))));</string_value>

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<string_value lines="1">blackstone</string_value>

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<string_value lines="1">buss</string_value>

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<string_value lines="1">Buss</string_value>

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<string_value lines="1">Evolution of King Crabs From Hermit-crab Ancestors</string_value>

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<year>

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<integer_value rank="0">1992</integer_value>

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<string_value lines="1">Nature</string_value>

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<string_value lines="1">1</string_value>

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<string_value lines="1">(Artemia_salina, ((Pagurus_pollicaris, Elassochirus_tenuimanus, Pagurus_longicarpus, Labidochirus_splendescens, (Pagurus_acadianus, Pagurus_bernhardus), (Paralithodes_camtschaticus, Lithodes_aequispinus)), (Clibanarius_vittatus, Coenobita_sp.)));</string_value>

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<optimality_criterion name="Maximum Parsimony"/>

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<string_value lines="1">NA</string_value>

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<string_value lines="1">Global bottlenecks in the distribution of marine Crustacea: temperature constraints in the family Lithodidae</string_value>

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<year>

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<integer_value rank="0">2009</integer_value>

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<string_value lines="1">Journal of Biogeography</string_value>

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<string_value lines="1">1</string_value>

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<string_value lines="1">21252135-</string_value>

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<string_value lines="1">NA</string_value>

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<string_value lines="1">Redescription of Petrolisthes edwardsii (de Saussure) and description of a new, sibling species from the eastern Pacific based on different colour, morphology and genetic identity (Crustacea : Anomura : Porcellanidae)</string_value>

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<year>

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<integer_value rank="0">2007</integer_value>

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<string_value lines="1">Organisms Diversity &Evolution</string_value>

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<string_value lines="1">1</string_value>

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<string_value lines="1">Molecular analysis of the taxonomic and distributional status for the hermit crab genera Loxopagurus Forest, 1964 and Isocheles Stimpson, 1858 (Decapoda, Anomura, Diogenidae)</string_value>

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<string_value lines="1">Zoosystema</string_value>

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<string_value lines="1">1</string_value>

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<string_value lines="1">Hermit crab phylogeny: A reappraisal and its fall-out</string_value>

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<year>

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<integer_value rank="0">2007</integer_value>

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<string_value lines="1">Journal of Crustacean Biology</string_value>

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<string_value lines="1">1</string_value>

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<string_value lines="1">(Neoglyphea_inopinata, (Petrolisthes_edwardsii, Petrolisthes_donadio, (Aegla_uruguayana, (Uroptychus_occidentalis, ((Lomis_hirta, ((Squillalbunea_scutelloides, ((Stemonopa_insignis, (Italialbunea_lutetiana, (Paralbunea_intermedia, ((Leucolepidopa_sunda, ((((Lepidopa_luciae, ((Lepidopa_esposa, (Lepidopa_chilensis, (Lepidopa_dexterae, Lepidopa_venusta, Lepidopa_websteri))), (Lepidopa_mexicana, Lepidopa_wollebaeki))), (Lepidopa_californica, (Lepidopa_haigae, ((Lepidopa_benedicti, Lepidopa_deamae), (Lepidopa_mearnsi, Lepidopa_richmondi))))), (Paraleucolepidopa_distincta, Paraleucolepidopa_myops)), (Austrolepidopa_schmitti, (Austrolepidopa_caledonia, Austrolepidopa_trigonops)))), (Paralbunea_manihinei, (Paralbunea_dayriti, Paralbunea_paradoxa)))))), (Albunea_hahnae, (Albunea_cuisiana, ((Albunea_galapagensis, (Albunea_speciosa, ((Albunea_occulta, (Albunea_elegans, Albunea_steinitzi, ((Albunea_holthuisi, (Albunea_marquisiana, (Albunea_symmysta, Albunea_groeningi))), (Albunea_catherinae, (Albunea_lucasia, Albunea_paretii))))), (Albunea_gibbesii, Albunea_thurstoni)))), (Albunea_bulla, (Albunea_carabus, Albunea_danai)), (Albunea_elioti, Albunea_microps)))))), (Zygopa_michaelis, Zygopa_nortoni))), (Hippa_testudinaria, Emerita_talpoida))), (Galathea_squamifera, ((Blepharipoda_doelloi, Blepharipoda_liberata, Blepharipoda_occidentalis, Blepharipoda_spinosa), (Lophomastix_japonica, (Lophomastix_antiqua, Lophomastix_diomedeae)))))));</string_value>

625

</tree_string>

626

<figure_legend>

627

<string_value lines="1">NA</string_value>

628

</figure_legend>

629

<figure_number>

630

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631

</figure_number>

632

<page_number>

633

<string_value lines="1">1</string_value>

634

</page_number>

635

<tree_inference>

636

<optimality_criterion name="Maximum Parsimony"/>

637

</tree_inference>

638

639

640

<string_value lines="1">NA</string_value>

641

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</topology>

643

</tree>

644

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645

<all_extant/>

646

</taxa_data>

647

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648

649

</character_data>

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653

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654

655

656

657

658

<string_value lines="1">morrison</string_value>

659

</surname>

660

<other_names>

661

<string_value lines="1">Morrison</string_value>

662

</other_names>

663

</author>

664

665

666

<string_value lines="1">harvey</string_value>

667

</surname>

668

<other_names>

669

<string_value lines="1">Harvey</string_value>

670

</other_names>

671

</author>

672

673

674

<string_value lines="1">lavery</string_value>

675

</surname>

676

<other_names>

677

<string_value lines="1">Lavery</string_value>

678

</other_names>

679

</author>

680

681

682

<string_value lines="1">tieu</string_value>

683

</surname>

684

<other_names>

685

<string_value lines="1">Tieu</string_value>

686

</other_names>

687

</author>

688

689

690

<string_value lines="1">huang</string_value>

691

</surname>

692

<other_names>

693

<string_value lines="1">Huang</string_value>

694

</other_names>

695

</author>

696

697

698

<string_value lines="1">cunningham</string_value>

699

</surname>

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<other_names>

701

<string_value lines="1">Cunningham</string_value>

702

</other_names>

703

</author>

704

</authors>

705

<title>

706

<string_value lines="1">Mitochondrial gene rearrangements confirm the parallel evolution of the crab-like form</string_value>

707

</title>

708

<year>

709

<integer_value rank="0">2002</integer_value>

710

</year>

711

712

<string_value lines="1">Proceedings of the Royal Society of London Series B-biological Sciences</string_value>

713

</journal>

714

715

<string_value lines="1">1</string_value>

716

</volume>

717

<pages>

718

<string_value lines="1">345350-</string_value>

719

</pages>

720

</article>

721

</bibliographic_information>

722

<source_tree name="morrison_etal_2002_1">

723

<tree>

724

<tree_string>

725

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726

<comment>Has a genus level taxon in: Lepidopa.</comment>

727

</tree_string>

728

<figure_legend>

729

<string_value lines="1">NA</string_value>

730

</figure_legend>

731

<figure_number>

732

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733

</figure_number>

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<page_number>

735

<string_value lines="1">1</string_value>

736

</page_number>

737

<tree_inference>

738

<optimality_criterion name="Maximum Likelihood"/>

739

</tree_inference>

740

741

742

<string_value lines="1">NA</string_value>

743

</outgroup>

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</topology>

745

</tree>

746

<taxa_data>

747

<all_extant/>

748

</taxa_data>

749

<character_data>

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751

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</character_data>

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<bibliographic_information>

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<string_value lines="1">porter</string_value>

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</surname>

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<string_value lines="1">Porter</string_value>

767

</other_names>

768

</author>

769

770

771

<string_value lines="1">perez-losada</string_value>

772

</surname>

773

<other_names>

774

<string_value lines="1">Perez-losada</string_value>

775

</other_names>

776

</author>

777

778

779

<string_value lines="1">crandall</string_value>

780

</surname>

781

<other_names>

782

<string_value lines="1">Crandall</string_value>

783

</other_names>

784

</author>

785

</authors>

786

<title>

787

<string_value lines="1">Model-based multi-locus estimation of decapod phylogeny and divergence times.</string_value>

788

</title>

789

<year>

790

<integer_value rank="0">2005</integer_value>

791

</year>

792

793

<string_value lines="1">Molecular Phylogenetics and Evolution</string_value>

794

</journal>

795

796

<string_value lines="1">1</string_value>

797

</volume>

798

<pages>

799

<string_value lines="1">355369-</string_value>

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</pages>

801

</article>

802

</bibliographic_information>

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<source_tree name="porter_etal_2005_1">

804

<tree>

805

<tree_string>

806

<string_value lines="1">((((((((((((Astacus_astacus, Pacifastacus_leniusculus), Cambaroides_japonicus), ((Orconectes_virilis, Cambarus_maculatus), Cambarellus_shufeldtii)), (Astacopsis_gouldi, Cherax_glaber)), ((((Homarus_gammarus, Homarus_americanus), Nephrops_norvegicus), Nephropsis_aculeata), Acanthacaris_caeca)), (((Lepidophthalmus_louisianensis, Sergio_guassutinga), Callichirus_major), (Callianassa_subterranea, Biffarius_arenosus))), ((Panulirus_regius, Scyllarus_arctus), Jasus_edwardsii)), ((((Munida_gregaria, Uroptychus_parvulus), Lithodes_santolla), (Lomis_hirta, (Aegla_neuquensis, Aegla_violacea, Aegla_alacalufi, Aegla_uruguayana, Aegla_sp.))), Emerita_brasiliensis)), ((((Pachygrapsus_marmoratus, Geothelphusa_sp.), Cancer_pagurus), (Carcinus_maenas, Necora_puber)), Maja_squinado)), ((((((Macrobrachium_sp., Macrobrachium_potiuna), Cryphiops_caementarius), Creaseria_morleyi), (Palaemonetes_paludosus, Macrobrachium_sintangense)), (Lysmata_debelius, Lysmata_wurdemanni)), (Atyoida_bisulcata, Typhlatya_pearsei))), Stenopus_hispidus), Penaeus_semisulcatus);</string_value>

807

</tree_string>

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<figure_legend>

809

<string_value lines="1">NA</string_value>

810

</figure_legend>

811

<figure_number>

812

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813

</figure_number>

814

<page_number>

815

<string_value lines="1">1</string_value>

816

</page_number>

817

<tree_inference>

818

<optimality_criterion name="Maximum Likelihood"/>

819

</tree_inference>

820

821

822

<string_value lines="1">NA</string_value>

823

</outgroup>

824

</topology>

825

</tree>

826

<taxa_data>

827

<all_extant/>

828

</taxa_data>

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<character_data>

830

831

832

833

834

</character_data>

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</source_tree>

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</source>

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838

<bibliographic_information>

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843

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</surname>

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<string_value lines="1">Tirelli</string_value>

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</other_names>

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</author>

849

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<string_value lines="1">silvestro</string_value>

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</surname>

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<other_names>

854

<string_value lines="1">Silvestro</string_value>

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</other_names>

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</author>

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858

859

<string_value lines="1">pessani</string_value>

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</surname>

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<other_names>

862

<string_value lines="1">Pessani</string_value>

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</other_names>

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</author>

865

866

867

<string_value lines="1">tudge</string_value>

868

</surname>

869

<other_names>

870

<string_value lines="1">Tudge</string_value>

871

</other_names>

872

</author>

873

</authors>

874

<title>

875

<string_value lines="1">Description of the male reproductive system of Paguristes eremita (Anomura, Diogenidae) and its placement in a phylogeny of diogenid species based on spermatozoal and spermatophore ultrastructure</string_value>

876

</title>

877

<year>

878

<integer_value rank="0">2010</integer_value>

879

</year>

880

881

<string_value lines="1">Zoologischer Anzeiger</string_value>

882

</journal>

883

884

<string_value lines="1">1</string_value>

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</volume>

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<pages>

887

<string_value lines="1">299-312</string_value>

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</pages>

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</article>

890

</bibliographic_information>

891

<source_tree name="tirelli_etal_2010_1">

892

<tree>

893

<tree_string>

894

<string_value lines="1">(Pagurus_bernhardus, (((((Calcinus_gaimardii, Calcinus_laevimanus, Calcinus_minutus, Calcinus_tubularis), Strigopagurus_boreonotus, Loxopagurus_loxochelis), ((((Dardanus_arrosor, Dardanus_crassimanus, Dardanus_lagopodes), Dardanus_scutellatus), (Diogenes_pallescens, Diogenes_custos)), Diogenes_pugilator, Cancellus_sp.)), Paguristes_eremita), (((Clibanarius_corallinus, Clibanarius_longitarsus, Clibanarius_taeniatus, Clibanarius_virescens), Clibanarius_erythropus), Clibanarius_vittatus)));</string_value>

895

</tree_string>

896

<figure_legend>

897

<string_value lines="1">NA</string_value>

898

</figure_legend>

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<figure_number>

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901

</figure_number>

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<page_number>

903

<string_value lines="1">1</string_value>

904

</page_number>

905

<tree_inference>

906

<optimality_criterion name="Maximum Parsimony"/>

907

</tree_inference>

908

909

910

<string_value lines="1">NA</string_value>

911

</outgroup>

912

</topology>

913

</tree>

914

<taxa_data>

915

<all_extant/>

916

</taxa_data>

917

<character_data>

918

919

</character_data>

920

</source_tree>

921

</source>

922

923

<bibliographic_information>

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925

926

927

928

<string_value lines="1">tsang</string_value>

929

</surname>

930

<other_names>

931

<string_value lines="1">Tsang</string_value>

932

</other_names>

933

</author>

934

935

936

<string_value lines="1">ma</string_value>

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</surname>

938

<other_names>

939

<string_value lines="1">Ma</string_value>

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</other_names>

941

</author>

942

943

944

<string_value lines="1">ahyong</string_value>

945

</surname>

946

<other_names>

947

<string_value lines="1">Ahyong</string_value>

948

</other_names>

949

</author>

950

951

952

<string_value lines="1">chan</string_value>

953

</surname>

954

<other_names>

955

<string_value lines="1">Chan</string_value>

956

</other_names>

957

</author>

958

959

960

<string_value lines="1">chu</string_value>

961

</surname>

962

<other_names>

963

<string_value lines="1">Chu</string_value>

964

</other_names>

965

</author>

966

</authors>

967

<title>

968

<string_value lines="1">Phylogeny of Decapoda using two nuclear protein-coding genes: Origin and evolution of the Reptantia</string_value>

969

</title>

970

<year>

971

<integer_value rank="0">2008</integer_value>

972

</year>

973

974

<string_value lines="1">Molecular Phylogenetics and Evolution</string_value>

975

</journal>

976

977

<string_value lines="1">1</string_value>

978

</volume>

979

<pages>

980

<string_value lines="1">359368</string_value>

981

</pages>

982

</article>

983

</bibliographic_information>

984

<source_tree name="tsang_etal_2008_1">

985

<tree>

986

<tree_string>

987

<string_value lines="1">((Sergia_maxima, ((Solenocera_melantho, Aristeus_virilis), (Sicyonia_lancifer, Penaeus_monodon))), ((((((Plesionika_hsuehyui, Heterocarpus_gibbosus), Glyphocrangon_perplexa), (Macrobrachium_rosenbergii, (Gnathophyllum_americanum, Hymenocera_picta))), (Acanthephyra_eximia, Rhynchocinetes_durbanensis)), Stenopus_hispidus), (((((Calastacus_crosnieri, Eiconaxius_indica), Calaxius_manningi), Calocarides_chani), (((Procambarus_clarkii, Cherax_quadricarinatus), (((Nephropsis_stewarti, Nephropides_caribaeus), (Thaumastocheles_dochmiodon, Homarus_gammarus)), Enoplometopus_debelius)), (((((Panulirus_versicolor, Panulirus_polyphagus), Panulirus_longipes), ((Linuparus_trigonus, Nupalirus_japonicus), (Puerulus_angulatus, Palinurus_elephas))), ((Jasus_edwardsii, Projasus_bahamondei), (Eduarctus_martensii, Ibacus_novemdentatus))), Polycheles_amemiyai))), (Austinogebia_edulis, (Thalassina_anomala, (((((((Paramunida_scabra, Munida_albiapicula), Petrolisthes_japonicus), Xylocheles_macrops), ((((Coenobita_violascens, Coenobita_rugosus), Dardanus_impressus), Paguristes_seminudus), (Propagurus_obtusifrons, (Pagurodofleinia_doederleini, Neolithodes_nipponensis)))), Lomis_hirta), Albunea_holthuisi), (((Eplumula_phalangium, Ranina_ranina), (Conchoecetes_artificiosus, Lauridromia_dehaani)), ((((((((Anatolikos_japonicus, Paradorippe_granulata), Carcinoplax_longimana), (Ovalipes_punctatus, Tokoyo_eburnea)), Calappa_philargius), Cryptopodia_fornicata), (Platymaia_remifera, Pugettia_nipponensis)), Jonas_distinctus), ((Eriocheir_japonica, Mictyris_longicarpus), Uca_crassipes)))))))));</string_value>

988

</tree_string>

989

<figure_legend>

990

<string_value lines="1">NA</string_value>

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</figure_legend>

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<figure_number>

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<string_value lines="1">0</string_value>

994

</figure_number>

995

<page_number>

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<string_value lines="1">1</string_value>

997

</page_number>

998

<tree_inference>

999

<optimality_criterion name="Maximum Likelihood"/>

1000

</tree_inference>

1001

1002

1003

<string_value lines="1">NA</string_value>

1004

</outgroup>

1005

</topology>

1006

</tree>

1007

<taxa_data>

1008

<all_extant/>

1009

</taxa_data>

1010

<character_data>

1011

1012

1013

</character_data>

1014

</source_tree>

1015

</source>

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1017

<bibliographic_information>

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1022

<string_value lines="1">tsang</string_value>

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</surname>

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<string_value lines="1">Tsang</string_value>

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</other_names>

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</author>

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1029

1030

<string_value lines="1">chan</string_value>

1031

</surname>

1032

<other_names>

1033

<string_value lines="1">Chan</string_value>

1034

</other_names>

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</author>

1036

1037

1038

<string_value lines="1">ahyong</string_value>

1039

</surname>

1040

<other_names>

1041

<string_value lines="1">Ahyong</string_value>

1042

</other_names>

1043

</author>

1044

1045

1046

<string_value lines="1">chu</string_value>

1047

</surname>

1048

<other_names>

1049

<string_value lines="1">Chu</string_value>

1050

</other_names>

1051

</author>

1052

</authors>

1053

<title>

1054

<string_value lines="1">Hermit to King, or Hermit to All: Multiple Transitions to Crab-like Forms from Hermit Crab Ancestors</string_value>

1055

</title>

1056

<year>

1057

<integer_value rank="0">2011</integer_value>

1058

</year>

1059

1060

<string_value lines="1">Systematic Biology</string_value>

1061

</journal>

1062

1063

<string_value lines="1">1</string_value>

1064

</volume>

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<pages>

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</pages>

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<source_tree name="tsang_etal_2011_1">

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<tree>

1072

<tree_string>

1073

<string_value lines="1">(((((((((((Lithodes_turritus, (Paralomis_arae, Paralomis_dofleini)), Neolithodes_nipponensis), ((Pagurus_sp., Pagurus_angustus), (Pagurodofleinia_doederleini, Pagurus_bernhardus))), (Icelopagurus_crosnieri, (Spiropagurus_profundorum, Propagurus_obtusifrons))), Michelopagurus_limatulus), ((((Coenobita_rugosus, Coenobita_violascens), (Clibanarius_virescens, (Clibanarius_humilis, Clibanarius_englaucus))), Calcinus_laevimanus), (Dardanus_setifer, Dardanus_impressus))), ((Trizocheles_sakaii, Trizocheles_brachyops), ((((Paragiopagurus_ventilatus, (Paragiopagurus_acutus, Oncopagurus_orientalis)), Paragiopagurus_boletifer), (Sympagurus_burkenroadi, Strobopagurus_gracilipes)), (((Aegla_alacalufi, Aegla_neuquensis), Lomis_hirta), ((Eumunida_funambulus, Kiwa_hirsuta), Uroptychodes_grandirostris))))), ((((Cervimunida_princeps, (Paramunida_tricarinata, Munida_albiapicula)), (Shinkaia_crosnieri, Munidopsis_formosa)), ((Petrolisthes_japonicus, Neopetrolisthes_maculatus), Novorostrum_indicum)), (Xylocheles_macrops, Pylocheles_mortensenii))), (Hippa_adactyla, Albunea_occulta)), ((Anatolikos_japonicus, Eriocheir_japonica), Conchoecetes_artificiosus)), Austinogebia_edulis);</string_value>

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</tree_string>

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<figure_legend>

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<string_value lines="1">NA</string_value>

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</figure_legend>

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<page_number>

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<tree_inference>

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<optimality_criterion name="Bayesian"/>

1086

</tree_inference>

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1089

<string_value lines="1">NA</string_value>

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<taxa_data>

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<character_data>

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</character_data>

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1110

1111

<string_value lines="1">werding</string_value>

1112

</surname>

1113

<other_names>

1114

<string_value lines="1">Werding</string_value>

1115

</other_names>

1116

</author>

1117

1118

1119

<string_value lines="1">hiller</string_value>

1120

</surname>

1121

<other_names>

1122

<string_value lines="1">Hiller</string_value>

1123

</other_names>

1124

</author>

1125

1126

1127

<string_value lines="1">misof</string_value>

1128

</surname>

1129

<other_names>

1130

<string_value lines="1">Misof</string_value>

1131

</other_names>

1132

</author>

1133

</authors>

1134

<title>

1135

<string_value lines="1">Evidence of paraphyly in the neotropical Porcellanid genus Neopisosoma (Crustacea : Anomura : Porcellanidae) based on molecular characters</string_value>

1136

</title>

1137

<year>

1138

<integer_value rank="0">2001</integer_value>

1139

</year>

1140

1141

<string_value lines="1">Hydrobiologia</string_value>

1142

</journal>

1143

1144

<string_value lines="1">1</string_value>

1145

</volume>

1146

<pages>

1147

<string_value lines="1">105-110</string_value>

1148

</pages>

1149

</article>

1150

</bibliographic_information>

1151

<source_tree name="werding_etal_2001_1">

1152

<tree>

1153

<tree_string>

1154

<string_value lines="1">(((((Porcellana_platycheles, (Neopisosoma_angustifrons, Pachycheles_serratus)), (Clastotoechus_nodosus, Clastotoechus_vanderhorsti)), ((Neopisosoma_neglectum, (Petrolisthes_magdalenensis, (Petrolisthes_jugosus, Petrolisthes_cinctipes))), Petrolisthes_tonsorius)), Petrolisthes_galathinus), Pagurus_longicarpus);</string_value>

1155

</tree_string>

1156

<figure_legend>

1157

<string_value lines="1">NA</string_value>

1158

</figure_legend>

1159

<figure_number>

1160

<string_value lines="1">0</string_value>

1161

</figure_number>

1162

<page_number>

1163

<string_value lines="1">1</string_value>

1164

</page_number>

1165

<tree_inference>

1166

<optimality_criterion name="Maximum Parsimony"/>

1167

</tree_inference>

1168

1169

1170

<string_value lines="1">NA</string_value>

1171

</outgroup>

1172

</topology>

1173

</tree>

1174

<taxa_data>

1175

<all_extant/>

1176

</taxa_data>

1177

<character_data>

1178

1179

</character_data>

1180

</source_tree>

1181

</source>

1182

</sources>

1183

1184

<event>

1185

1186

<string_value lines="1">2013-11-15 11:24</string_value>

1187

</datetime>

1188

1189

<string_value lines="1">Data independence checked.</string_value>

1190

</action>

1191

</event>

1192

<event>

1193

1194

<string_value lines="1">2014-12-13 19:50</string_value>

1195

</datetime>

1196

1197

<string_value lines="1">Taxa substitution from

1198

Aegla denticulata denticulata to Aegla_denticulata

1199

Acanthephyra eximea to Acanthephyra_eximia

1200

Aegla denticulata lacustris to Aegla_denticulata

1201

Aegla laevis laevis to Aegla_laevis

1202

Aegla laevis talcahuano to Aegla_laevis

1203

Aegla schmitti to Aegla_schmitii

1204

Aegla uruguyana to Aegla_uruguayana

1205

Albunea occultus to Albunea_occulta

1206

Astacoides madagascarensis to Astacoides_madagascariensis

1207

Axius glyptocercus to Neaxius_glyptocercus

1208

Axius vivesi to Neaxius_vivesi

1209

Bathymunida ballssi to Bathymunida_balssi

1210

Bythiopagurus macroculus to Bythiopagurus_macrocolus

1211

Calcinus tibicen to Gilvossius_setimanus

1212

Calcinus verrilli to Calcinus_verrillii

1213

Callianassa filholi to Biffarius_filholi

1214

Callianassa jamaiciense to Lepidophthalmus_jamaicense

1215

Callianqssa tyrrhena to Callianassa_tyrrhena

1216

Cambarus bartoni to Cambarus_bartonii

1217

Cancer japonica to Anatolikos_japonicus

1218

Cancer japonicus to Anatolikos_japonicus

1219

Cheiroplatea laticauda to Cheiroplatea_laticaudata

1220

Clibanarius albidigitatus to Clibanarius_albidigitus

1221

Clibanarius merguiensisy to Clibanarius_merguiensis

1222

Cliopagurus galzini to Ciliopagurus_galzini

1223

Cliopagurus strigatus to Ciliopagurus_strigatus

1224

Cliopagurus tricolor to Ciliopagurus_tricolor

1225

Cliopagurus vakovako to Ciliopagurus_vakovako

1226

Coenobita compressus to Coenobita_compressa

1227

Eiconaxius indicus to Eiconaxius_indica

1228

Ellasochirus tenulmanus to Elassochirus_tenuimanus

1229

Galathea californiensis to Janetogalathea_californiensis

1230

Hapalogaster dentatus to Hapalogaster_dentata

1231

Hepatus ephileticus to Hepatus_epheliticus

1232

Heteronida spinirostris to Heteronida_aspinirostris

1233

Jaxea nocnturna to Jaxea_nocturna

1234

Jonas distincta to Jonas_distinctus

1235

Justitia japonica to Nupalirus_japonicus

1236

Latreilla elegans to Latreillia_elegans

1237

Laurentiella to Saintlaurentiella

1238

Lepidopa californicus to Lepidopa_californica

1239

Lepidopa daemae to Lepidopa_deamae

1240

Lithodes aequispina to Lithodes_aequispinus

1241

Macropipus puber to Necora_puber

1242

Munida caeli n. sp. to Munida_caeli

1243

Munida callista to Babamunida_callista

1244

Munida lailai n. sp. to Munida_lailai

1245

Munida leviantennata to Enriquea_leviantennata

1246

Munida longipes to Agononida_longipes

1247

Munida mendagnai n. sp. to Munida_mendagnai

1248

Munida oblongata n. sp. to Munida_oblongata

1249

Munida ofella to Munida_offella

1250

Munida rubrodigitalis to Munida_rubridigitalis

1251

Munida subrugosa to Munida_gregaria

1252

Neopisossoma angustifrons to Neopisosoma_angustifrons

1253

Odeignathus inermis to Oedignathus_inermis

1254

Pachycheles haigae to Pachycheles_laevidactylus

1255

Paguristes calliopsis to Pseudopaguristes_calliopsis

1256

Paguristes pilosus to Areopaguristes_pilosus

1257

Paguristes wedelli to Paguristes_weddellii

1258

Pagurus hirsuticusulus to Pagurus_hirsutiusculus

1259

Pagurus mclaughlinae to Pagurus_maclaughlinae

1260

Palaemon elegans to Macrobrachium_sintangense

1261

Paralithodes camtschatica to Paralithodes_camtschaticus

1262

Paramola japonica to Paromola_japonica

1263

Paramunida lophia n. sp. to Paramunida_lophia

1264

Paramunida salai n. sp. to Paramunida_salai

1265

Paramunida thaliae to Paramunida_thalie

1266

Petrolisthes galathinus var. 1 to Petrolisthes_galathinus

1267

Petrolisthes galathinus var. 2 to Petrolisthes_galathinus

1268

Petrolisthes galathinus var. 3 to Petrolisthes_galathinus

1269

Petrolisthes galathinus var. 4 to Petrolisthes_galathinus

1270

Petrolisthes galathinus var. 5 to Petrolisthes_galathinus

1271

Petrolisthes galathinus var. 6 to Petrolisthes_galathinus

1272

Petrolisthes galathinus var. 7 to Petrolisthes_galathinus

1273

Petrolisthes lewisi austrinsus to Petrolisthes_lewisi

1274

Petrolisthes magdalensis to Petrolisthes_magdalenensis

1275

Philyra pisum to Pyrhila_pisum

1276

Plesionida concava n. sp. to Plesionida_concava

1277

Polycheles aculeatus to Stereomastis_aculeata

1278

Polycheles galil to Stereomastis_galil

1279

Polycheles suhmi to Stereomastis_suhmi

1280

Procamharus clarkii to Procambarus_clarkii

1281

Pylocheles crosnieri to Bathycheles_crosnieri

1282

Pylocheles cubensis to Bathycheles_cubensis

1283

Pylocheles incisus to Bathycheles_incisus

1284

Pylocheles integer to Bathycheles_integer

1285

Pylocheles macrops to Xylocheles_macrops

1286

Pylocheles miersi to Xylocheles_miersi

1287

Pylocheles profundus to Bathycheles_integer

1288

Sergio mericeae to Sergio_guassutinga

1289

Sicyonia cristata to Sicyonia_lancifer

1290

Squillalbunea mariellae to Squillalbunea_scutelloides

1291

Trizocheles gracilis to Trizocheles_boasi

1292

Trizocheles perplexus to Forestocheles_perplexus

1293

Trizocheles spinosus bathamae to Trizocheles_spinosus

1294

Trizocheles spinosus spinosus to Trizocheles_spinosus

1295

Uroptychus nitida to Uroptychus_nitidus

1296

via GUI</string_value>

1297

</action>

1298

</event>

1299

<event>

1300

1301

<string_value lines="1">2014-12-13 19:53</string_value>

1302

</datetime>

1303

1304

<string_value lines="1">Taxa substitution from

1305

Aeglidae to Aegla

1306

Blepharipodidae to Blepharipoda,Lophomastix,Bythiopagurus,Catapagurus,Discorsopagurus,Elassochirus,Icelopagurus,Labidochirus,Lithopagurus,Michelopagurus,Nematopagurus,Pagurodofleinia,Pagurus,Phimochirus,Porcellanopagurus,Propagurus,Pylopagurus,Spiropagurus,Xylopagurus

1307

Chirostylidae to Chirostylus,Gastroptychus,Uroptychus

1308

Coenobitidae to Birgus,Coenobita

1309

Diogenidae to Aniculus,Areopaguristes,Calcinus,Cancellus,Ciliopagurus,Clibanarius,Dardanus,Diogenes,Isocheles,Loxopagurus,Paguristes,Petrochirus,Pseudopaguristes,Strigopagurus

1310

Dromiidae to Conchoecetes,Lauridromia

1311

Galatheidae to Alainius,Allogalathea,Galathea,Janetogalathea

1312

Hapalogastrinae to Dermaturus,Hapalogaster,Oedignathus

1313

Hippidae to Emerita,Hippa

1314

Kiwaidae to Kiwa

1315

Lithodinae to Lithodes,Lopholithodes,Neolithodes,Paralithodes,Paralomis,Phyllolithodes,Glyptolithodes,Cryptolithodes

1316

Lomisidae to Lomis

1317

Paguridae to None

1318

Parapaguridae to Oncopagurus,Paragiopagurus,Parapagurus,Probeebei,Strobopagurus,Sympagurus

1319

Porcellanidae to Aliaporcellana,Allopetrolisthes,Clastotoechus,Euceramus,Liopetrolisthes,Lissoporcellana,Megalobrachium,Neopetrolisthes,Neopisosoma,Novorostrum,Pachycheles,Parapetrolisthes,Petrocheles,Petrolisthes,Pisidia,Polyonyx,Porcellana,Porcellanella

1320

Pylochelidae to Pomatocheles,Parapylocheles,Mixtopagurus,Cancellocheles,Forestocheles,Bathycheles,Cheiroplatea,Pylocheles,Xylocheles

1321

via GUI. Saved to /home/jhill1/work/software/supertree-toolkit/workshop/doc/tutorial/Section_5.4.3_data/5.higher_taxa_removed.phyml</string_value>

1322

</action>

1323

</event>

1324

<event>

1325

1326

<string_value lines="1">2014-12-13 21:06</string_value>

1327

</datetime>

1328

1329

<string_value lines="1">Taxa substitution from

1330

Aeglidae to Aegla

1331

Albuneidae to Albunea,Austrolepidopa,Harryhausenia

1332

MRP_Outgroup to None

1333

via GUI</string_value>

1334

</action>

1335

</event>

1336

</history>

1337

</phylo_storage>

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