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  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2014-06-08 10:25:35 UTC
  • mfrom: (1.1.22)
  • Revision ID: package-import@ubuntu.com-20140608102535-ebgnhcpcrum3i3w8
Tags: 1.64+dfsg-1
http://bugs.debian.org/750845
* New upstream version
* Build-Depends raxml only on those architectures where it is available
  Closes: #750845

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Tests/CodonAlign/adh.aln
 
1
CLUSTAL W (1.81) multiple sequence alignment
 
2
 
 
3
gi|9217|emb|X57365.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
4
gi|9219|emb|X57366.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
5
gi|9221|emb|X57367.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
6
gi|9223|emb|X57368.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
7
gi|9225|emb|X57369.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
8
gi|9227|emb|X57370.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
9
gi|9229|emb|X57371.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
10
gi|9231|emb|X57372.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
11
gi|9233|emb|X57373.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
12
gi|9235|emb|X57374.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
13
gi|9237|emb|X57375.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
14
gi|9239|emb|X57376.1|               MAFTLTNKNVVFVAGLGGIGLDTSKELVKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
15
gi|9097|emb|X57361.1|               MAFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
16
gi|9099|emb|X57362.1|               MAFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
17
gi|9101|emb|X57363.1|               MAFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
18
gi|9103|emb|X57364.1|               MAFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
19
gi|156879|gb|M17837.1|DROADHCK      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
20
gi|156877|gb|M17836.1|DROADHCJ      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
21
gi|156875|gb|M17835.1|DROADHCI      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
22
gi|156873|gb|M17834.1|DROADHCH      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
23
gi|156871|gb|M17833.1|DROADHCG      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
24
gi|156863|gb|M19547.1|DROADHCC      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
25
gi|156869|gb|M17832.1|DROADHCF      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
26
gi|156867|gb|M17831.1|DROADHCE      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
27
gi|156865|gb|M17830.1|DROADHCD      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
28
gi|156861|gb|M17828.1|DROADHCB      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
29
gi|156859|gb|M17827.1|DROADHCA      MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAELKAINPKVTVT
 
30
                                    *:********:****************:********************************
 
31
 
 
32
gi|9217|emb|X57365.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
33
gi|9219|emb|X57366.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
34
gi|9221|emb|X57367.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
35
gi|9223|emb|X57368.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
36
gi|9225|emb|X57369.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
37
gi|9227|emb|X57370.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
38
gi|9229|emb|X57371.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
39
gi|9231|emb|X57372.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
40
gi|9233|emb|X57373.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
41
gi|9235|emb|X57374.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
42
gi|9237|emb|X57375.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
43
gi|9239|emb|X57376.1|               FYPYDVTVPIAETTKLLKTIFAQLKTIDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
44
gi|9097|emb|X57361.1|               FYPYDVTVPIAETTKLLKTIFAKLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
45
gi|9099|emb|X57362.1|               FYPYDVTVPIAETTKLLKTIFAKLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
46
gi|9101|emb|X57363.1|               FYPYDVTVPIAETTKLLKTIFAKLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
47
gi|9103|emb|X57364.1|               FYPYDVTVPIAETTKLLKTIFAKLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
48
gi|156879|gb|M17837.1|DROADHCK      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
49
gi|156877|gb|M17836.1|DROADHCJ      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
50
gi|156875|gb|M17835.1|DROADHCI      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
51
gi|156873|gb|M17834.1|DROADHCH      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
52
gi|156871|gb|M17833.1|DROADHCG      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
53
gi|156863|gb|M19547.1|DROADHCC      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
54
gi|156869|gb|M17832.1|DROADHCF      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
55
gi|156867|gb|M17831.1|DROADHCE      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
56
gi|156865|gb|M17830.1|DROADHCD      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
57
gi|156861|gb|M17828.1|DROADHCB      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
58
gi|156859|gb|M17827.1|DROADHCA      FYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDHQIERTIAVNYTGLVNTTTAI
 
59
                                    **********************:***:*********************************
 
60
 
 
61
gi|9217|emb|X57365.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
62
gi|9219|emb|X57366.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
63
gi|9221|emb|X57367.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
64
gi|9223|emb|X57368.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
65
gi|9225|emb|X57369.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
66
gi|9227|emb|X57370.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
67
gi|9229|emb|X57371.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
68
gi|9231|emb|X57372.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
69
gi|9233|emb|X57373.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
70
gi|9235|emb|X57374.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
71
gi|9237|emb|X57375.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
72
gi|9239|emb|X57376.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
73
gi|9097|emb|X57361.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
74
gi|9099|emb|X57362.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
75
gi|9101|emb|X57363.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
76
gi|9103|emb|X57364.1|               LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
77
gi|156879|gb|M17837.1|DROADHCK      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
78
gi|156877|gb|M17836.1|DROADHCJ      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
79
gi|156875|gb|M17835.1|DROADHCI      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
80
gi|156873|gb|M17834.1|DROADHCH      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
81
gi|156871|gb|M17833.1|DROADHCG      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
82
gi|156863|gb|M19547.1|DROADHCC      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
83
gi|156869|gb|M17832.1|DROADHCF      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
84
gi|156867|gb|M17831.1|DROADHCE      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
85
gi|156865|gb|M17830.1|DROADHCD      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
86
gi|156861|gb|M17828.1|DROADHCB      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
87
gi|156859|gb|M17827.1|DROADHCA      LDFWDKRKGGPGGIICNIGSVTGFNAIYQVPVYSGTKAAVVNFTSSLAKLAPITGVTAYT
 
88
                                    ************************************************************
 
89
 
 
90
gi|9217|emb|X57365.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
91
gi|9219|emb|X57366.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
92
gi|9221|emb|X57367.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
93
gi|9223|emb|X57368.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
94
gi|9225|emb|X57369.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
95
gi|9227|emb|X57370.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
96
gi|9229|emb|X57371.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
97
gi|9231|emb|X57372.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
98
gi|9233|emb|X57373.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
99
gi|9235|emb|X57374.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
100
gi|9237|emb|X57375.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
101
gi|9239|emb|X57376.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAQNFVKAIELNQNGAIWKLDL
 
102
gi|9097|emb|X57361.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
103
gi|9099|emb|X57362.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
104
gi|9101|emb|X57363.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
105
gi|9103|emb|X57364.1|               VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
106
gi|156879|gb|M17837.1|DROADHCK      VNPGITRTTLVHTFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
107
gi|156877|gb|M17836.1|DROADHCJ      VNPGITRTTLVHTFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
108
gi|156875|gb|M17835.1|DROADHCI      VNPGITRTTLVHTFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
109
gi|156873|gb|M17834.1|DROADHCH      VNPGITRTTLVHTFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
110
gi|156871|gb|M17833.1|DROADHCG      VNPGITRTTLVHTFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
111
gi|156863|gb|M19547.1|DROADHCC      VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
112
gi|156869|gb|M17832.1|DROADHCF      VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
113
gi|156867|gb|M17831.1|DROADHCE      VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
114
gi|156865|gb|M17830.1|DROADHCD      VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
115
gi|156861|gb|M17828.1|DROADHCB      VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
116
gi|156859|gb|M17827.1|DROADHCA      VNPGITRTTLVHKFNSWLDVEPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDL
 
117
                                    ************.***************************:*******************
 
118
 
 
119
gi|9217|emb|X57365.1|               GTLEAIQWSKHWDSGI
 
120
gi|9219|emb|X57366.1|               GTLEAIQWSKHWDSGI
 
121
gi|9221|emb|X57367.1|               GTLEAIQWSKHWDSGI
 
122
gi|9223|emb|X57368.1|               GTLEAIQWSKHWDSGI
 
123
gi|9225|emb|X57369.1|               GTLEAIQWSKHWDSGI
 
124
gi|9227|emb|X57370.1|               GTLEAIQWSKHWDSGI
 
125
gi|9229|emb|X57371.1|               GTLEAIQWSKHWDSGI
 
126
gi|9231|emb|X57372.1|               GTLEAIQWSKHWDSGI
 
127
gi|9233|emb|X57373.1|               GTLEAIQWSKHWDSGI
 
128
gi|9235|emb|X57374.1|               GTLEAIQWSKHWDSGI
 
129
gi|9237|emb|X57375.1|               GTLEAIQWSKHWDSGI
 
130
gi|9239|emb|X57376.1|               GTLEAIQWSKHWDSGI
 
131
gi|9097|emb|X57361.1|               GTLEAIQWTKHWDSGI
 
132
gi|9099|emb|X57362.1|               GTLEAIQWTKHWDSGI
 
133
gi|9101|emb|X57363.1|               GTLEAIQWTKHWDSGI
 
134
gi|9103|emb|X57364.1|               GTLEAIQWTKHWDSGI
 
135
gi|156879|gb|M17837.1|DROADHCK      GTLEAIQWTKHWDSGI
 
136
gi|156877|gb|M17836.1|DROADHCJ      GTLEAIQWTKHWDSGI
 
137
gi|156875|gb|M17835.1|DROADHCI      GTLEAIQWTKHWDSGI
 
138
gi|156873|gb|M17834.1|DROADHCH      GTLEAIQWTKHWDSGI
 
139
gi|156871|gb|M17833.1|DROADHCG      GTLEAIQWTKHWDSGI
 
140
gi|156863|gb|M19547.1|DROADHCC      GTLEAIQWTKHWDSGI
 
141
gi|156869|gb|M17832.1|DROADHCF      GTLEAIQWTKHWDSGI
 
142
gi|156867|gb|M17831.1|DROADHCE      GTLEAIQWTKHWDSGI
 
143
gi|156865|gb|M17830.1|DROADHCD      GTLEAIQWTKHWDSGI
 
144
gi|156861|gb|M17828.1|DROADHCB      GTLEAIQWTKHWDSGI
 
145
gi|156859|gb|M17827.1|DROADHCA      GTLEAIQWTKHWDSGI
 
146
                                    ********:*******