12
PyX can be used for data and function plotting. At present x-y-graphs and
13
x-y-z-graphs are supported only. However, the component architecture of the
14
graph system described in section :ref:`graph_components` allows for additional
15
graph geometries while reusing most of the existing components.
17
Creating a graph splits into two basic steps. First you have to create a graph
18
instance. The most simple form would look like::
21
g = graph.graphxy(width=8)
23
The graph instance ``g`` created in this example can then be used to actually
24
plot something into the graph. Suppose you have some data in a file
25
:file:`graph.dat` you want to plot. The content of the file could look like:
28
.. include:: graph.dat
31
To plot these data into the graph ``g`` you must perform::
33
g.plot(graph.data.file("graph.dat", x=1, y=2))
35
The method :meth:`plot` takes the data to be plotted and optionally a list of
36
graph styles to be used to plot the data. When no styles are provided, a default
37
style defined by the data instance is used. For data read from a file by an
38
instance of :class:`graph.data.file`, the default are symbols. When
39
instantiating :class:`graph.data.file`, you not only specify the file name, but
40
also a mapping from columns to axis names and other information the styles might
41
make use of (*e.g.* data for error bars to be used by the errorbar style).
43
While the graph is already created by that, we still need to perform a write of
44
the result into a file. Since the graph instance is a canvas, we can just call
45
its :meth:`writeEPSfile` method. ::
47
g.writeEPSfile("graph")
49
The result :file:`graph.eps` is shown in figure :ref:`fig_graph`.
55
A minimalistic plot for the data from file :file:`graph.dat`.
57
Instead of plotting data from a file, other data source are available as well.
58
For example function data is created and placed into :meth:`plot` by the
61
g.plot(graph.data.function("y(x)=x**2"))
63
You can plot different data in a single graph by calling :meth:`plot` several
64
times before :meth:`writeEPSfile` or :meth:`writePDFfile`. Note that a calling
65
:meth:`plot` will fail once a graph was forced to "finish" itself. This happens
66
automatically, when the graph is written to a file. Thus it is not an option to
67
call :meth:`plot` after :meth:`writeEPSfile` or :meth:`writePDFfile`. The topic
68
of the finalization of a graph is addressed in more detail in section
69
:mod:`graph.graph`. As you can see in figure :ref:`fig_graph2`, a function is
70
plotted as a line by default.
76
Plotting data from a file together with a function.
78
While the axes ranges got adjusted automatically in the previous example, they
79
might be fixed by keyword options in axes constructors. Plotting only a function
80
will need such a setting at least in the variable coordinate. The following code
81
also shows how to set a logathmic axis in y-direction:
84
.. include:: graph3.py
87
The result is shown in figure :ref:`fig_graph3`.
93
Plotting a function for a given axis range and use a logarithmic y-axis.
98
Component architecture
99
======================
101
Creating a graph involves a variety of tasks, which thus can be separated into
102
components without significant additional costs. This structure manifests itself
103
also in the PyX source, where there are different modules for the different
104
tasks. They interact by some well-defined interfaces. They certainly have to be
105
completed and stabilized in their details, but the basic structure came up in
106
the continuous development quite clearly. The basic parts of a graph are:
109
Defines the geometry of the graph by means of graph coordinates with range
110
[0:1]. Keeps lists of plotted data, axes *etc.*
113
Produces or prepares data to be plotted in graphs.
116
Performs the plotting of the data into the graph. It gets data, converts them
117
via the axes into graph coordinates and uses the graph to finally plot the data
118
with respect to the graph geometry methods.
121
Responsible for the graph keys.
124
Creates axes for the graph, which take care of the mapping from data values to
125
graph coordinates. Because axes are also responsible for creating ticks and
126
labels, showing up in the graph themselves and other things, this task is
127
splitted into several independent subtasks. Axes are discussed separately in
130
.. module:: graph.graph
132
Module :mod:`graph.graph`: Graph geometry
133
=========================================
136
The classes :class:`graphxy` and :class:`graphxyz` are part of the module
137
:mod:`graph.graph`. However, there are shortcuts to access the classes via
138
``graph.graphxy`` and ``graph.graphxyz``, respectively.
141
.. class:: graphxy(xpos=0, ypos=0, width=None, height=None, ratio=goldenmean, key=None, backgroundattrs=None, axesdist=0.8*unit.v_cm, xaxisat=None, yaxisat=None, **axes)
143
This class provides an x-y-graph. A graph instance is also a fully functional
146
The position of the graph on its own canvas is specified by *xpos* and *ypos*.
147
The size of the graph is specified by *width*, *height*, and *ratio*. These
148
parameters define the size of the graph area not taking into account the
149
additional space needed for the axes. Note that you have to specify at least
150
*width* or *height*. *ratio* will be used as the ratio between *width* and
151
*height* when only one of these is provided.
153
*key* can be set to a :class:`graph.key.key` instance to create an automatic
154
graph key. ``None`` omits the graph key.
156
*backgroundattrs* is a list of attributes for drawing the background of the
157
graph. Allowed are decorators, strokestyles, and fillstyles. ``None`` disables
160
*axisdist* is the distance between axes drawn at the same side of a graph.
162
*xaxisat* and *yaxisat* specify a value at the y and x axis, where the
163
corresponding axis should be moved to. It's a shortcut for corresonding calls of
164
:meth:`axisatv` described below. Moving an axis by *xaxisat* or *yaxisat*
165
disables the automatic creation of a linked axis at the opposite side of the
168
*\*\*axes* receives axes instances. Allowed keywords (axes names) are ``x``,
169
``x2``, ``x3``, *etc.* and ``y``, ``y2``, ``y3``, *etc.* When not providing an
170
``x`` or ``y`` axis, linear axes instances will be used automatically. When not
171
providing a ``x2`` or ``y2`` axis, linked axes to the ``x`` and ``y`` axes are
172
created automatically and *vice versa*. As an exception, a linked axis is not
173
created automatically when the axis is placed at a specific position by
174
*xaxisat* or *yaxisat*. You can disable the automatic creation of axes by
175
setting the linked axes to ``None``. The even numbered axes are plotted at the
176
top (``x`` axes) and right (``y`` axes) while the others are plotted at the
177
bottom (``x`` axes) and left (``y`` axes) in ascending order each.
179
Some instance attributes might be useful for outside read-access. Those are:
182
.. attribute:: graphxy.axes
184
A dictionary mapping axes names to the :class:`anchoredaxis` instances.
186
To actually plot something into the graph, the following instance method
187
:meth:`plot` is provided:
190
.. method:: graphxy.plot(data, styles=None)
192
Adds *data* to the list of data to be plotted. Sets *styles* to be used for
193
plotting the data. When *styles* is ``None``, the default styles for the data as
194
provided by *data* is used.
196
*data* should be an instance of any of the data described in section
199
When the same combination of styles (*i.e.* the same references) are used
200
several times within the same graph instance, the styles are kindly asked by the
201
graph to iterate their appearance. Its up to the styles how this is performed.
203
Instead of calling the plot method several times with different *data* but the
204
same style, you can use a list (or something iterateable) for *data*.
206
While a graph instance only collects data initially, at a certain point it must
207
create the whole plot. Once this is done, further calls of :meth:`plot` will
208
fail. Usually you do not need to take care about the finalization of the graph,
209
because it happens automatically once you write the plot into a file. However,
210
sometimes position methods (described below) are nice to be accessible. For
211
that, at least the layout of the graph must have been finished. By calling the
212
:meth:`do`\ -methods yourself you can also alter the order in which the graph
213
components are plotted. Multiple calls to any of the :meth:`do`\ -methods have
214
no effect (only the first call counts). The orginal order in which the
215
:meth:`do`\ -methods are called is:
218
.. method:: graphxy.dolayout()
220
Fixes the layout of the graph. As part of this work, the ranges of the axes are
221
fitted to the data when the axes ranges are allowed to adjust themselves to the
222
data ranges. The other :meth:`do`\ -methods ensure, that this method is always
226
.. method:: graphxy.dobackground()
228
Draws the background.
231
.. method:: graphxy.doaxes()
236
.. method:: graphxy.doplotitem(plotitem)
238
Plots the plotitem as returned by the graphs plot method.
241
.. method:: graphxy.doplot()
243
Plots all (remaining) plotitems.
246
.. method:: graphxy.dokeyitem()
248
Inserts a plotitem in the graph key as returned by the graphs plot method.
251
.. method:: graphxy.dokey()
253
Inserts the graph key.
256
.. method:: graphxy.finish()
258
Finishes the graph by calling all pending :meth:`do`\ -methods. This is done
259
automatically, when the output is created.
261
The graph provides some methods to access its geometry:
264
.. method:: graphxy.pos(x, y, xaxis=None, yaxis=None)
266
Returns the given point at *x* and *y* as a tuple ``(xpos, ypos)`` at the graph
267
canvas. *x* and *y* are anchoredaxis instances for the two axes *xaxis* and
268
*yaxis*. When *xaxis* or *yaxis* are ``None``, the axes with names ``x`` and
269
``y`` are used. This method fails if called before :meth:`dolayout`.
272
.. method:: graphxy.vpos(vx, vy)
274
Returns the given point at *vx* and *vy* as a tuple ``(xpos, ypos)`` at the
275
graph canvas. *vx* and *vy* are graph coordinates with range [0:1].
278
.. method:: graphxy.vgeodesic(vx1, vy1, vx2, vy2)
280
Returns the geodesic between points *vx1*, *vy1* and *vx2*, *vy2* as a path. All
281
parameters are in graph coordinates with range [0:1]. For :class:`graphxy` this
285
.. method:: graphxy.vgeodesic_el(vx1, vy1, vx2, vy2)
287
Like :meth:`vgeodesic` but this method returns the path element to connect the
291
single: xbasepath()@xbasepath() (graphxy method)
292
single: xvbasepath()@xvbasepath() (graphxy method)
293
single: xgridpath()@xgridpath() (graphxy method)
294
single: xvgridpath()@xvgridpath() (graphxy method)
295
single: xtickpoint()@xtickpoint() (graphxy method)
296
single: xvtickpoint()@xvtickpoint() (graphxy method)
297
single: xtickdirection()@xtickdirection() (graphxy method)
298
single: xvtickdirection()@xvtickdirection() (graphxy method)
299
single: ybasepath()@ybasepath() (graphxy method)
300
single: yvbasepath()@yvbasepath() (graphxy method)
301
single: ygridpath()@ygridpath() (graphxy method)
302
single: yvgridpath()@yvgridpath() (graphxy method)
303
single: ytickpoint()@ytickpoint() (graphxy method)
304
single: yvtickpoint()@yvtickpoint() (graphxy method)
305
single: ytickdirection()@ytickdirection() (graphxy method)
306
single: yvtickdirection()@yvtickdirection() (graphxy method)
308
Further geometry information is available by the :attr:`axes` instance variable,
309
with is a dictionary mapping axis names to :class:`anchoredaxis` instances.
310
Shortcuts to the anchoredaxis positioner methods for the ``x``\ - and ``y``\
311
-axis become available after :meth:`dolayout` as :class:`graphxy` methods
312
``Xbasepath``, ``Xvbasepath``, ``Xgridpath``, ``Xvgridpath``, ``Xtickpoint``,
313
``Xvtickpoint``, ``Xtickdirection``, and ``Xvtickdirection`` where the prefix
314
``X`` stands for ``x`` and ``y``.
317
.. method:: graphxy.axistrafo(axis, t)
319
This method can be used to apply a transformation *t* to an
320
:class:`anchoredaxis` instance *axis* to modify the axis position and the like.
321
This method fails when called on a not yet finished axis, i.e. it should be used
322
after :meth:`dolayout`.
325
.. method:: graphxy.axisatv(axis, v)
327
This method calls :meth:`axistrafo` with a transformation to move the axis
328
*axis* to a graph position *v* (in graph coordinates).
330
The class :class:`graphxyz` is very similar to the :class:`graphxy` class,
331
except for its additional dimension. In the following documentation only the
332
differences to the :class:`graphxy` class are described.
335
.. class:: graphxyz(xpos=0, ypos=0, size=None, xscale=1, yscale=1, zscale=1/goldenmean, projector=central(10, -30, 30), key=None, **axes)
337
This class provides an x-y-z-graph.
339
The position of the graph on its own canvas is specified by *xpos* and *ypos*.
340
The size of the graph is specified by *size* and the length factors *xscale*,
341
*yscale*, and *zscale*. The final size of the graph depends on the projector
342
*projector*, which is called with ``x``, ``y``, and ``z`` values up to *xscale*,
343
*yscale*, and *zscale* respectively and scaling the result by *size*. For a
344
parallel projector changing *size* is thus identical to changing *xscale*,
345
*yscale*, and *zscale* by the same factor. For the central projector the
346
projectors internal distance would also need to be changed by this factor. Thus
347
*size* changes the size of the whole graph without changing the projection.
349
*projector* defines the conversion of 3d coordinates to 2d coordinates. It can
350
be an instance of :class:`central` or :class:`parallel` described below.
352
*\*\*axes* receives axes instances as for :class:`graphxyz`. The graphxyz allows
353
for 4 axes per graph dimension ``x``, ``x2``, ``x3``, ``x4``, ``y``, ``y2``,
354
``y3``, ``y4``, ``z``, ``z2``, ``z3``, and ``z4``. The x-y-plane is the
355
horizontal plane at the bottom and the ``x``, ``x2``, ``y``, and ``y2`` axes are
356
placed at the boundary of this plane with ``x`` and ``y`` always being in front.
357
``x3``, ``x4``, ``y3``, and ``y4`` are handled similar, but for the top plane of
358
the graph. The ``z`` axis is placed at the origin of the ``x`` and ``y``
359
dimension, whereas ``z2`` is placed at the final point of the ``x`` dimension,
360
``z3`` at the final point of the ``y`` dimension and ``z4`` at the final point
361
of the ``x`` and ``y`` dimension together.
364
.. attribute:: graphxyz.central
366
The central attribute of the graphxyz is the :class:`central` class. See the
367
class description below.
370
.. attribute:: graphxyz.parallel
372
The parallel attribute of the graphxyz is the :class:`parallel` class. See the
373
class description below.
375
Regarding the 3d to 2d transformation the methods :meth:`pos`, :meth:`vpos`,
376
:meth:`vgeodesic`, and :meth:`vgeodesic_el` are available as for class
377
:class:`graphxy` and just take an additional argument for the dimension. Note
378
that a similar transformation method (3d to 2d) is available as part of the
379
projector as well already, but only the graph acknowledges its size, the scaling
380
and the internal tranformation of the graph coordinates to the scaled
381
coordinates. As the projector also implements a :meth:`zindex` and a
382
:meth:`angle` method, those are also available at the graph level in the graph
383
coordinate variant (i.e. having an additional v in its name and using values
384
from 0 to 1 per dimension).
387
.. method:: graphxyz.vzindex(vx, vy, vz)
389
The depths of the point defined by *vx*, *vy*, and *vz* scaled to a range [-1:1]
390
where 1 in closed to the viewer. All arguments passed to the method are in graph
391
coordinates with range [0:1].
394
.. method:: graphxyz.vangle(vx1, vy1, vz1, vx2, vy2, vz2, vx3, vy3, vz3)
396
The cosine of the angle of the view ray thru point ``(vx1, vy1, vz1)`` and the
397
plane defined by the points ``(vx1, vy1, vz1)``, ``(vx2, vy2, vz2)``, and
398
``(vx3, vy3, vz3)``. All arguments passed to the method are in graph coordinates
401
There are two projector classes :class:`central` and :class:`parallel`:
404
.. class:: central(distance, phi, theta, anglefactor=math.pi/180)
406
Instances of this class implement a central projection for the given parameters.
408
*distance* is the distance of the viewer from the origin. Note that the
409
:class:`graphxyz` class uses the range ``-xscale`` to ``xscale``, ``-yscale`` to
410
``yscale``, and ``-zscale`` to ``zscale`` for the coordinates ``x``, ``y``, and
411
``z``. As those scales are of the order of one (by default), the distance should
412
be of the order of 10 to give nice results. Smaller distances increase the
413
central projection character while for huge distances the central projection
414
becomes identical to the parallel projection.
416
``phi`` is the angle of the viewer in the x-y-plane and ``theta`` is the angle
417
of the viewer to the x-y-plane. The standard notation for spheric coordinates
418
are used. The angles are multiplied by *anglefactor* which is initialized to do
419
a degree in radiant transformation such that you can specify ``phi`` and
420
``theta`` in degree while the internal computation is always done in radiants.
423
.. class:: parallel(phi, theta, anglefactor=math.pi/180)
425
Instances of this class implement a parallel projection for the given
426
parameters. There is no distance for that transformation (compared to the
427
central projection). All other parameters are identical to the :class:`central`
431
.. module:: graph.data
433
Module :mod:`graph.data`: Graph data
434
====================================
437
The following classes provide data for the :meth:`plot` method of a graph. The
438
classes are implemented in :mod:`graph.data`.
441
.. class:: file(filename, commentpattern=defaultcommentpattern, columnpattern=defaultcolumnpattern, stringpattern=defaultstringpattern, skiphead=0, skiptail=0, every=1, title=notitle, context={}, copy=1, replacedollar=1, columncallback="__column__", **columns)
443
This class reads data from a file and makes them available to the graph system.
444
*filename* is the name of the file to be read. The data should be organized in
447
The arguments *commentpattern*, *columnpattern*, and *stringpattern* are
448
responsible for identifying the data in each line of the file. Lines matching
449
*commentpattern* are ignored except for the column name search of the last non-
450
empty comment line before the data. By default a line starting with one of the
451
characters ``'#'``, ``'%'``, or ``'!'`` as well as an empty line is treated as a
454
A non-comment line is analysed by repeatedly matching *stringpattern* and,
455
whenever the stringpattern does not match, by *columnpattern*. When the
456
*stringpattern* matches, the result is taken as the value for the next column
457
without further transformations. When *columnpattern* matches, it is tried to
458
convert the result to a float. When this fails the result is taken as a string
459
as well. By default, you can write strings with spaces surrounded by ``'"'``
460
immediately surrounded by spaces or begin/end of line in the data file.
461
Otherwise ``'"'`` is not taken to be special.
463
*skiphead* and *skiptail* are numbers of data lines to be ignored at the
464
beginning and end of the file while *every* selects only every *every* line from
467
*title* is the title of the data to be used in the graph key. A default title is
468
constructed out of *filename* and *\*\*columns*. You may set *title* to ``None``
469
to disable the title.
471
Finally, *columns* define columns out of the existing columns from the file by a
472
column number or a mathematical expression (see below). When *copy* is set the
473
names of the columns in the file (file column names) and the freshly created
474
columns having the names of the dictionary key (data column names) are passed as
475
data to the graph styles. The data columns may hide file columns when names are
476
equal. For unset *copy* the file columns are not available to the graph styles.
478
File column names occur when the data file contains a comment line immediately
479
in front of the data (except for empty or empty comment lines). This line will
480
be parsed skipping the matched comment identifier as if the line would be
481
regular data, but it will not be converted to floats even if it would be
482
possible to convert the items. The result is taken as file column names, *i.e.*
483
a string representation for the columns in the file.
485
The values of *\*\*columns* can refer to column numbers in the file starting at
486
``1``. The column ``0`` is also available and contains the line number starting
487
from ``1`` not counting comment lines, but lines skipped by *skiphead*,
488
*skiptail*, and *every*. Furthermore values of *\*\*columns* can be strings:
489
file column names or complex mathematical expressions. To refer to columns
490
within mathematical expressions you can also use file column names when they are
491
valid variable identifiers. Equal named items in context will then be hidden.
492
Alternatively columns can be access by the syntax ``$<number>`` when
493
*replacedollar* is set. They will be translated into function calls to
494
*columncallback*, which is a function to access column data by index or name.
496
*context* allows for accessing external variables and functions when evaluating
497
mathematical expressions for columns. Additionally to the identifiers in
498
*context*, the file column names, the *columncallback* function and the
499
functions shown in the table "builtins in math expressions" at the end of the
500
section are available.
504
graph.data.file("test.dat", a=1, b="B", c="2*B+$3")
506
with :file:`test.dat` looking like::
512
The columns with name ``"a"``, ``"b"``, ``"c"`` will become ``"[1.234,
513
5.678]"``, ``"[1.0, 3.0]"``, and ``"[4.0, 10.0]"``, respectively. The columns
514
``"A"``, ``"B"``, ``"C"`` will be available as well, since *copy* is enabled by
517
When creating several data instances accessing the same file, the file is read
518
only once. There is an inherent caching of the file contents.
520
For the sake of completeness we list the default patterns:
523
.. attribute:: file.defaultcommentpattern
525
``re.compile(r"(#+|!+|%+)\s*")``
528
.. attribute:: file.defaultcolumnpattern
530
``re.compile(r"\"(.*?)\"(\s+|$)")``
533
.. attribute:: file.defaultstringpattern
535
``re.compile(r"(.*?)(\s+|$)")``
538
.. class:: function(expression, title=notitle, min=None, max=None, points=100, context={})
540
This class creates graph data from a function. *expression* is the mathematical
541
expression of the function. It must also contain the result variable name
542
including the variable the function depends on by assignment. A typical example
543
looks like ``"y(x)=sin(x)"``.
545
*title* is the title of the data to be used in the graph key. By default
546
*expression* is used. You may set *title* to ``None`` to disable the title.
548
*min* and *max* give the range of the variable. If not set, the range spans the
549
whole axis range. The axis range might be set explicitly or implicitly by ranges
550
of other data. *points* is the number of points for which the function is
551
calculated. The points are choosen linearly in terms of graph coordinates.
553
*context* allows for accessing external variables and functions. Additionally to
554
the identifiers in *context*, the variable name and the functions shown in the
555
table "builtins in math expressions" at the end of the section are available.
558
.. class:: paramfunction(varname, min, max, expression, title=notitle, points=100, context={})
560
This class creates graph data from a parametric function. *varname* is the
561
parameter of the function. *min* and *max* give the range for that variable.
562
*points* is the number of points for which the function is calculated. The
563
points are choosen lineary in terms of the parameter.
565
*expression* is the mathematical expression for the parametric function. It
566
contains an assignment of a tuple of functions to a tuple of variables. A
567
typical example looks like ``"x, y = cos(k), sin(k)"``.
569
*title* is the title of the data to be used in the graph key. By default
570
*expression* is used. You may set *title* to ``None`` to disable the title.
572
*context* allows for accessing external variables and functions. Additionally to
573
the identifiers in *context*, *varname* and the functions shown in the table
574
"builtins in math expressions" at the end of the section are available.
577
.. class:: values(title="user provided values", **columns)
579
This class creates graph data from externally provided data. Each column is a
580
list of values to be used for that column.
582
*title* is the title of the data to be used in the graph key.
585
.. class:: points(data, title="user provided points", addlinenumbers=1, **columns)
587
This class creates graph data from externally provided data. *data* is a list of
588
lines, where each line is a list of data values for the columns.
590
*title* is the title of the data to be used in the graph key.
592
The keywords of *\*\*columns* become the data column names. The values are the
593
column numbers starting from one, when *addlinenumbers* is turned on (the zeroth
594
column is added to contain a line number in that case), while the column numbers
595
starts from zero, when *addlinenumbers* is switched off.
598
.. class:: data(data, title=notitle, context=, copy=1, replacedollar=1, columncallback="__column__", **columns)
600
This class provides graph data out of other graph data. *data* is the source of
601
the data. All other parameters work like the equally called parameters in
602
:class:`graph.data.file`. Indeed, the latter is built on top of this class by
603
reading the file and caching its contents in a :class:`graph.data.list`
607
.. class:: conffile(filename, title=notitle, context=, copy=1, replacedollar=1, columncallback="__column__", **columns)
609
This class reads data from a config file with the file name *filename*. The
610
format of a config file is described within the documentation of the
611
:mod:`ConfigParser` module of the Python Standard Library.
613
Each section of the config file becomes a data line. The options in a section
614
are the columns. The name of the options will be used as file column names. All
615
other parameters work as in *graph.data.file* and *graph.data.data* since they
616
all use the same code.
619
.. class:: cbdfile(filename, minrank=None, maxrank=None, title=notitle, context=, copy=1, replacedollar=1, columncallback="__column__", **columns)
621
This is an experimental class to read map data from cbd-files. See
622
`<http://sepwww.stanford.edu/ftp/World_Map/>`_ for some world-map data.
624
The builtins in math expressions are listed in the following table:
626
+------------------+--------------------------------------------+
628
+==================+============================================+
629
| ``neg`` | ``lambda x: -x`` |
630
+------------------+--------------------------------------------+
631
| ``abs`` | ``lambda x: x < 0 and -x or x`` |
632
+------------------+--------------------------------------------+
633
| ``sgn`` | ``lambda x: x < 0 and -1 or 1`` |
634
+------------------+--------------------------------------------+
635
| ``sqrt`` | ``math.sqrt`` |
636
+------------------+--------------------------------------------+
637
| ``exp`` | ``math.exp`` |
638
+------------------+--------------------------------------------+
639
| ``log`` | ``math.log`` |
640
+------------------+--------------------------------------------+
641
| ``sin`` | ``math.sin`` |
642
+------------------+--------------------------------------------+
643
| ``cos`` | ``math.cos`` |
644
+------------------+--------------------------------------------+
645
| ``tan`` | ``math.tan`` |
646
+------------------+--------------------------------------------+
647
| ``asin`` | ``math.asin`` |
648
+------------------+--------------------------------------------+
649
| ``acos`` | ``math.acos`` |
650
+------------------+--------------------------------------------+
651
| ``atan`` | ``math.atan`` |
652
+------------------+--------------------------------------------+
653
| ``sind`` | ``lambda x: math.sin(math.pi/180*x)`` |
654
+------------------+--------------------------------------------+
655
| ``cosd`` | ``lambda x: math.cos(math.pi/180*x)`` |
656
+------------------+--------------------------------------------+
657
| ``tand`` | ``lambda x: math.tan(math.pi/180*x)`` |
658
+------------------+--------------------------------------------+
659
| ``asind`` | ``lambda x: 180/math.pi*math.asin(x)`` |
660
+------------------+--------------------------------------------+
661
| ``acosd`` | ``lambda x: 180/math.pi*math.acos(x)`` |
662
+------------------+--------------------------------------------+
663
| ``atand`` | ``lambda x: 180/math.pi*math.atan(x)`` |
664
+------------------+--------------------------------------------+
665
| ``norm`` | ``lambda x, y: math.hypot(x, y)`` |
666
+------------------+--------------------------------------------+
667
| ``splitatvalue`` | see the ``splitatvalue`` description below |
668
+------------------+--------------------------------------------+
669
| ``pi`` | ``math.pi`` |
670
+------------------+--------------------------------------------+
671
| ``e`` | ``math.e`` |
672
+------------------+--------------------------------------------+
674
``math`` refers to Pythons :mod:`math` module. The ``splitatvalue`` function is
678
.. function:: splitatvalue(value, *splitpoints)
680
This method returns a tuple ``(section, value)``. The section is calculated by
681
comparing *value* with the values of splitpoints. If *splitpoints* contains only
682
a single item, ``section`` is ``0`` when value is lower or equal this item and
683
``1`` else. For multiple splitpoints, ``section`` is ``0`` when its lower or
684
equal the first item, ``None`` when its bigger than the first item but lower or
685
equal the second item, ``1`` when its even bigger the second item, but lower or
686
equal the third item. It continues to alter between ``None`` and ``2``, ``3``,
690
.. module:: graph.style
692
Module :mod:`graph.style`: Graph styles
693
=======================================
695
Please note that we are talking about graph styles here. Those are responsible
696
for plotting symbols, lines, bars and whatever else into a graph. Do not mix it
697
up with path styles like the line width, the line style (solid, dashed, dotted
700
The following classes provide styles to be used at the :meth:`plot` method of a
701
graph. The plot method accepts a list of styles. By that you can combine several
702
styles at the very same time.
704
Some of the styles below are hidden styles. Those do not create any output, but
705
they perform internal data handling and thus help on modularization of the
706
styles. Usually, a visible style will depend on data provided by one or more
707
hidden styles but most of the time it is not necessary to specify the hidden
708
styles manually. The hidden styles register themself to be the default for
709
providing certain internal data.
712
.. class:: pos(epsilon=1e-10)
714
This class is a hidden style providing a position in the graph. It needs a data
715
column for each graph dimension. For that the column names need to be equal to
716
an axis name. Data points are considered to be out of graph when their position
717
in graph coordinates exceeds the range [0:1] by more than *epsilon*.
720
.. class:: range(usenames=, epsilon=1e-10)
722
This class is a hidden style providing an errorbar range. It needs data column
723
names constructed out of a axis name ``X`` for each dimension errorbar data
724
should be provided as follows:
726
+-----------+---------------------------+
727
| data name | description |
728
+===========+===========================+
729
| ``Xmin`` | minimal value |
730
+-----------+---------------------------+
731
| ``Xmax`` | maximal value |
732
+-----------+---------------------------+
733
| ``dX`` | minimal and maximal delta |
734
+-----------+---------------------------+
735
| ``dXmin`` | minimal delta |
736
+-----------+---------------------------+
737
| ``dXmax`` | maximal delta |
738
+-----------+---------------------------+
740
When delta data are provided the style will also read column data for the axis
741
name ``X`` itself. *usenames* allows to insert a translation dictionary from
742
axis names to the identifiers ``X``.
744
*epsilon* is a comparison precision when checking for invalid errorbar ranges.
747
.. class:: symbol(symbol=changecross, size=0.2*unit.v_cm, symbolattrs=[])
749
This class is a style for plotting symbols in a graph. *symbol* refers to a
750
(changeable) symbol function with the prototype ``symbol(c, x_pt, y_pt, size_pt,
751
attrs)`` and draws the symbol into the canvas ``c`` at the position ``(x_pt,
752
y_pt)`` with size ``size_pt`` and attributes ``attrs``. Some predefined symbols
753
are available in member variables listed below. The symbol is drawn at size
754
*size* using *symbolattrs*. *symbolattrs* is merged with ``defaultsymbolattrs``
755
which is a list containing the decorator :class:`deco.stroked`. An instance of
756
:class:`symbol` is the default style for all graph data classes described in
757
section :mod:`graph.data` except for :class:`function` and
758
:class:`paramfunction`.
760
The class :class:`symbol` provides some symbol functions as member variables,
764
.. attribute:: symbol.cross
766
A cross. Should be used for stroking only.
769
.. attribute:: symbol.plus
771
A plus. Should be used for stroking only.
774
.. attribute:: symbol.square
776
A square. Might be stroked or filled or both.
779
.. attribute:: symbol.triangle
781
A triangle. Might be stroked or filled or both.
784
.. attribute:: symbol.circle
786
A circle. Might be stroked or filled or both.
789
.. attribute:: symbol.diamond
791
A diamond. Might be stroked or filled or both.
793
:class:`symbol` provides some changeable symbol functions as member variables,
797
.. attribute:: symbol.changecross
799
attr.changelist([cross, plus, square, triangle, circle, diamond])
802
.. attribute:: symbol.changeplus
804
attr.changelist([plus, square, triangle, circle, diamond, cross])
807
.. attribute:: symbol.changesquare
809
attr.changelist([square, triangle, circle, diamond, cross, plus])
812
.. attribute:: symbol.changetriangle
814
attr.changelist([triangle, circle, diamond, cross, plus, square])
817
.. attribute:: symbol.changecircle
819
attr.changelist([circle, diamond, cross, plus, square, triangle])
822
.. attribute:: symbol.changediamond
824
attr.changelist([diamond, cross, plus, square, triangle, circle])
827
.. attribute:: symbol.changesquaretwice
829
attr.changelist([square, square, triangle, triangle, circle, circle, diamond,
833
.. attribute:: symbol.changetriangletwice
835
attr.changelist([triangle, triangle, circle, circle, diamond, diamond, square,
839
.. attribute:: symbol.changecircletwice
841
attr.changelist([circle, circle, diamond, diamond, square, square, triangle,
845
.. attribute:: symbol.changediamondtwice
847
attr.changelist([diamond, diamond, square, square, triangle, triangle, circle,
850
The class :class:`symbol` provides two changeable decorators for alternated
851
filling and stroking. Those are especially useful in combination with the
852
:meth:`change`\ -\ :meth:`twice`\ -symbol methods above. They are:
855
.. attribute:: symbol.changestrokedfilled
857
attr.changelist([deco.stroked, deco.filled])
860
.. attribute:: symbol.changefilledstroked
862
attr.changelist([deco.filled, deco.stroked])
865
.. class:: line(lineattrs=[])
867
This class is a style to stroke lines in a graph. *lineattrs* is merged with
868
``defaultlineattrs`` which is a list containing the member variable
869
``changelinestyle`` as described below. An instance of :class:`line` is the
870
default style of the graph data classes :class:`function` and
871
:class:`paramfunction` described in section :mod:`graph.data`.
873
The class :class:`line` provides a changeable line style. Its definition is:
876
.. attribute:: line.changelinestyle
878
attr.changelist([style.linestyle.solid, style.linestyle.dashed,
879
style.linestyle.dotted, style.linestyle.dashdotted])
882
.. class:: impulses(lineattrs=[], fromvalue=0, frompathattrs=[], valueaxisindex=1)
884
This class is a style to plot impulses. *lineattrs* is merged with
885
``defaultlineattrs`` which is a list containing the member variable
886
``changelinestyle`` of the :class:`line` class. *fromvalue* is the baseline
887
value of the impulses. When set to ``None``, the impulses will start at the
888
baseline. When fromvalue is set, *frompathattrs* are the stroke attributes used
889
to show the impulses baseline path.
892
.. class:: errorbar(size=0.1*unit.v_cm, errorbarattrs=[], epsilon=1e-10)
894
This class is a style to stroke errorbars in a graph. *size* is the size of the
895
caps of the errorbars and *errorbarattrs* are the stroke attributes. Errorbars
896
and error caps are considered to be out of the graph when their position in
897
graph coordinates exceeds the range [0:1] by more that *epsilon*. Out of graph
898
caps are omitted and the errorbars are cut to the valid graph range.
901
.. class:: text(textname="text", dxname=None, dyname=None, dxunit=0.3*unit.v_cm, dyunit=0.3*unit.v_cm, textdx=0*unit.v_cm, textdy=0.3*unit.v_cm, textattrs=[])
903
This class is a style to stroke text in a graph. The text to be written has to
904
be provided in the data column named ``textname``. *textdx* and *textdy* are the
905
position of the text with respect to the position in the graph. Alternatively
906
you can specify a ``dxname`` and a ``dyname`` and provide appropriate data in
907
those columns to be taken in units of *dxunit* and *dyunit* to specify the
908
position of the text for each point separately. *textattrs* are text attributes
909
for the output of the text. Those attributes are merged with the default
910
attributes ``textmodule.halign.center`` and ``textmodule.vshift.mathaxis``.
913
.. class:: arrow(linelength=0.25*unit.v_cm, arrowsize=0.15*unit.v_cm, lineattrs=[], arrowattrs=[], arrowpos=0.5, epsilon=1e-10, decorator=deco.earrow)
915
This class is a style to plot short lines with arrows into a two-dimensional
916
graph to a given graph position. The arrow parameters are defined by two
917
additional data columns named ``size`` and ``angle`` define the size and angle
918
for each arrow. ``size`` is taken as a factor to *arrowsize* and *linelength*,
919
the size of the arrow and the length of the line the arrow is plotted at.
920
``angle`` is the angle the arrow points to with respect to a horizontal line.
921
The ``angle`` is taken in degrees and used in mathematically positive sense.
922
*lineattrs* and *arrowattrs* are styles for the arrow line and arrow head,
923
respectively. *arrowpos* defines the position of the arrow line with respect to
924
the position at the graph. The default ``0.5`` means centered at the graph
925
position, whereas ``0`` and ``1`` creates the arrows to start or end at the
926
graph position, respectively. *epsilon* is used as a cutoff for short arrows in
927
order to prevent numerical instabilities. *decorator* defines the decorator to
928
be added to the line.
931
.. class:: rect(gradient=color.gradient.Grey)
933
This class is a style to plot colored rectangles into a two-dimensional graph.
934
The size of the rectangles is taken from the data provided by the :class:`range`
935
style. The additional data column named ``color`` specifies the color of the
936
rectangle defined by *gradient*. The valid color range is [0:1].
939
.. class:: histogram(lineattrs=[], steps=0, fromvalue=0, frompathattrs=[], fillable=0, rectkey=0, autohistogramaxisindex=0, autohistogrampointpos=0.5, epsilon=1e-10)
941
This class is a style to plot histograms. *lineattrs* is merged with
942
``defaultlineattrs`` which is ``[deco.stroked]``. When *steps* is set, the
943
histrogram is plotted as steps instead of the default being a boxed histogram.
944
*fromvalue* is the baseline value of the histogram. When set to ``None``, the
945
histogram will start at the baseline. When fromvalue is set, *frompathattrs* are
946
the stroke attributes used to show the histogram baseline path.
948
The *fillable* flag changes the stoke line of the histogram to make it fillable
949
properly. This is important on non-steped histograms or on histograms, which hit
950
the graph boundary. *rectkey* can be set to generate a rectanglar area instead
951
of a line in the graph key.
953
In the most general case, a histogram is defined by a range specification (like
954
for an errorbar) in one graph dimension (say, along the x-axis) and a value for
955
the other graph dimension. This allows for the widths of the histogram boxes
956
being variable. Often, however, all histogram bin ranges are equally sized, and
957
instead of passing the range, the position of the bin along the x-axis fully
958
specifies the histogram - assuming that there are at least two bins. This common
959
case is supported via two parameters: *autohistogramaxisindex*, which defines
960
the index of the independent histogram axis (in the case just described this
961
would be ``0`` designating the x axis). *autohistogrampointpos*, defines the
962
relative position of the center of the histogram bin: ``0.5`` means that the bin
963
is centered at the values passed to the style, ``0`` (``1``) means that the bin
964
is aligned at the right-(left-)hand side.
966
XXX describe, how to specify general histograms with varying bin widths
968
Positions of the histograms are considered to be out of graph when they exceed
969
the graph coordinate range [0:1] by more than *epsilon*.
972
.. class:: barpos(fromvalue=None, frompathattrs=[], epsilon=1e-10)
974
This class is a hidden style providing position information in a bar graph.
975
Those graphs need to contain a specialized axis, namely a bar axis. The data
976
column for this bar axis is named ``Xname`` where ``X`` is an axis name. In the
977
other graph dimension the data column name must be equal to an axis name. To
978
plot several bars in a single graph side by side, you need to have a nested bar
979
axis and provide a tuple as data for nested bar axis.
981
The bars start at *fromvalue* when provided. The *fromvalue* is marked by a
982
gridline stroked using *frompathattrs*. Thus this hidden style might actually
983
create some output. The value of a bar axis is considered to be out of graph
984
when its position in graph coordinates exceeds the range [0:1] by more than
988
.. class:: stackedbarpos(stackname, addontop=0, epsilon=1e-10)
990
This class is a hidden style providing position information in a bar graph by
991
stacking a new bar on top of another bar. The value of the new bar is taken from
992
the data column named *stackname*. When *addontop* is set, the values is taken
993
relative to the previous top of the bar.
996
.. class:: bar(barattrs=[], epsilon=1e-10, gradient=color.gradient.RedBlack)
998
This class draws bars in a bar graph. The bars are filled using *barattrs*.
999
*barattrs* is merged with ``defaultbarattrs`` which is a list containing
1000
``[color.gradient.Rainbow, deco.stroked([color.grey.black])]``.
1002
The bar style has limited support for 3d graphs: Occlusion does not work
1003
properly on stacked bars or multiple dataset. *epsilon* is used in 3d to prevent
1004
numerical instabilities on bars without hight. When *gradient* is not ``None``
1005
it is used to calculate a lighting coloring taking into account the angle
1006
between the view ray and the bar and the distance between viewer and bar. The
1007
precise conversion is defined in the :meth:`lighting` method.
1010
.. class:: changebar(barattrs=[])
1012
This style works like the :class:`bar` style, but instead of the *barattrs* to
1013
be changed on subsequent data instances the *barattrs* are changed for each
1014
value within a single data instance. In the result the style can't be applied to
1015
several data instances and does not support 3d. The style raises an error
1019
.. class:: gridpos(index1=0, index2=1, gridlines1=1, gridlines2=1, gridattrs=[], epsilon=1e-10)
1021
This class is a hidden style providing rectangular grid information out of graph
1022
positions for graph dimensions *index1* and *index2*. Data points are considered
1023
to be out of graph when their position in graph coordinates exceeds the range
1024
[0:1] by more than *epsilon*. Data points are merged to a single graph
1025
coordinate value when their difference in graph coordinates is below *epsilon*.
1028
.. class:: grid(gridlines1=1, gridlines2=1, gridattrs=[])
1030
Strokes a rectangular grid in the first grid direction, when *gridlines1* is set
1031
and in the second grid direction, when *gridlines2* is set. *gridattrs* is
1032
merged with ``defaultgridattrs`` which is a list containing the member variable
1033
``changelinestyle`` of the :class:`line` class.
1036
.. class:: surface(colorname="color", gradient=color.gradient.Grey, mincolor=None, maxcolor=None, gridlines1=0.05, gridlines2=0.05, gridcolor=None, backcolor=color.gray.black)
1038
Draws a surface of a rectangular grid. Each rectangle is divided into 4
1041
The grid can be colored using values provided by the data column named
1042
*colorname*. The values are rescaled to the range [0:1] using mincolor and
1043
maxcolor (which are taken from the minimal and maximal values, but larger bounds
1046
If no *colorname* column exists, the surface style falls back to a lighting
1047
coloring taking into account the angle between the view ray and the triangle and
1048
the distance between viewer and triangle. The precise conversion is defined in
1049
the :meth:`lighting` method.
1051
If a *gridcolor* is set, the rectangular grid is marked by small stripes of the
1052
relative (compared to each rectangle) size of *gridlines1* and *gridlines2* for
1053
the first and second grid direction, respectively.
1055
*backcolor* is used to fill triangles shown from the back. If *backcolor* is set
1056
to ``None``, back sides are not drawn differently from the front sides.
1058
The surface is encoded using a single mesh. While this is quite space efficient,
1059
it has the following implications:
1061
* All colors must use the same color space.
1063
* HSB colors are not allowed, whereas Gray, RGB, and CMYK are allowed. You can
1064
convert HSB colors into a different color space before passing them to the
1067
* The grid itself is also constructed out of triangles. The grid is transformed
1068
along with the triangles thus looking quite different from a stroked grid (as
1069
done by the grid style).
1071
* Occlusion is handled by proper painting order.
1073
* Color changes are continuous (in the selected color space) for each triangle.
1077
.. module:: graph.key
1079
Module :mod:`graph.key`: Graph keys
1080
===================================
1082
The following class provides a key, whose instances can be passed to the
1083
constructor keyword argument ``key`` of a graph. The class is implemented in
1087
.. class:: key(dist=0.2*unit.v_cm, pos="tr", hpos=None, vpos=None, hinside=1, vinside=1, hdist=0.6*unit.v_cm, vdist=0.4*unit.v_cm, symbolwidth=0.5*unit.v_cm, symbolheight=0.25*unit.v_cm, symbolspace=0.2*unit.v_cm, textattrs=[], columns=1, columndist=0.5*unit.v_cm, border=0.3*unit.v_cm, keyattrs=None)
1089
This class writes the title of the data in a plot together with a small
1090
illustration of the style. The style is responsible for its illustration.
1092
*dist* is a visual length and a distance between the key entries. *pos* is the
1093
position of the key with respect to the graph. Allowed values are combinations
1094
of ``"t"`` (top), ``"m"`` (middle) and ``"b"`` (bottom) with ``"l"`` (left),
1095
``"c"`` (center) and ``"r"`` (right). Alternatively, you may use *hpos* and
1096
*vpos* to specify the relative position using the range [0:1]. *hdist* and
1097
*vdist* are the distances from the specified corner of the graph. *hinside* and
1098
*vinside* are numbers to be set to 0 or 1 to define whether the key should be
1099
placed horizontally and vertically inside of the graph or not.
1101
*symbolwidth* and *symbolheight* are passed to the style to control the size of
1102
the style illustration. *symbolspace* is the space between the illustration and
1103
the text. *textattrs* are attributes for the text creation. They are merged with
1104
``[text.vshift.mathaxis]``.
1106
*columns* is a number of columns of the graph key and *columndist* is the
1107
distance between those columns.
1109
When *keyattrs* is set to contain some draw attributes, the graph key is
1110
enlarged by *border* and the key area is drawn using *keyattrs*.