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  • Committer: Package Import Robot
  • Author(s): Charles Plessy
  • Date: 2012-06-22 13:14:27 UTC
  • mfrom: (1.1.3)
  • Revision ID: package-import@ubuntu.com-20120622131427-538ff7c4fn6xtbj4
Tags: 0.2.6-1
60eb374 Imported Upstream version 0.2.6
9de2ad5 Removed patches applied or obsoleted upstream.
2836b51 Refreshed hardening patch.
7677e45 Regression tests for autopkgtest.

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bgzip.c
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static void fail(BGZF* fp)
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{
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    fprintf(stderr, "Error: %s\n", fp->error);
 
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    fprintf(stderr, "Error: %d\n", fp->errcode);
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    exit(1);
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}
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                else if (!pstdout && isatty(fileno((FILE *)stdout)) )
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                        return bgzip_main_usage();
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                fp = bgzf_fdopen(f_dst, "w");
 
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                fp = bgzf_dopen(f_dst, "w");
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                buffer = malloc(WINDOW_SIZE);
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                while ((c = read(f_src, buffer, WINDOW_SIZE)) > 0)
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                        if (bgzf_write(fp, buffer, c) < 0) fail(fp);
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                else
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                {
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                        f_dst = fileno(stdout);
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                        fp = bgzf_fdopen(fileno(stdin), "r");
 
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                        fp = bgzf_dopen(fileno(stdin), "r");
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                        if (fp == NULL) {
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                                fprintf(stderr, "[bgzip] Could not read from stdin: %s\n", strerror(errno));
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                                return 1;