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Committer: Bazaar Package Importer
Author(s): zhaoway
Date: 2001-04-24 07:09:13 UTC
Revision ID: james.westby@ubuntu.com-20010424070913-uzpupnwdfhmliebz

Tags: upstream-1.1

Import upstream version 1.1

files added:

.garlicrc

1mal.script

2fcp.script

2omf.script

2por.script

BUGS

COPYING

ENVIRONMENT

HISTORY

INSTALL

Makefile

README

TODO

absolute_value.c

add_bond.c

add_char.c

add_three_colors.c

add_two_colors.c

align_complexes.c

align_normal.c

alloc_config.c

alloc_gui.c

alloc_mol_complex.c

alloc_nearest.c

anchor.xpm

angle.c

apply_selection.c

assign_hyphob.c

assign_radii.c

atom_names.c

atoms.c

atoms.script

atoms_style1.c

atoms_style2.c

atoms_style3.c

atoms_style4.c

atoms_style5.c

atoms_style6.c

atoms_style7.c

backbone.c

background.c

balls.c

balls2.c

big2.c

big_spheres.c

bond_style1_quad1.c

bond_style1_quad2.c

bond_style1_quad3.c

bond_style1_quad4.c

bond_style2_quad1.c

bond_style2_quad2.c

bond_style2_quad3.c

bond_style2_quad4.c

bond_style3_quad1.c

bond_style3_quad2.c

bond_style3_quad3.c

bond_style3_quad4.c

bond_style4_quad1.c

bond_style4_quad2.c

bond_style4_quad3.c

bond_style4_quad4.c

bond_style5_quad1.c

bond_style5_quad2.c

bond_style5_quad3.c

bond_style5_quad4.c

bonds.c

bonds.script

bonds_style1.c

bonds_style2.c

bonds_style3.c

bonds_style4.c

bonds_style5.c

button_press.c

calc_params.c

calculate_phi.c

calculate_psi.c

catch.c

center.c

chain.c

chains.c

change_fading.c

change_slab.c

check_con.c

check_dist.c

cis_trans.c

color.c

color_hyphob.c

color_model.c

color_schemes.c

color_shifts.c

colors.script

colors2.script

comm_backbone.c

comm_fading.c

comm_move.c

comm_rotate.c

comm_slab.c

comm_translate.c

commands.h

compare.c

compare_sequences.c

comparison_mouse.c

control.xpm

control_click.c

control_refresh.c

copy_doubles.c

copy_sequence.c

copypur.c

count_nc_bonds.c

count_residues.c

cpk.c

create_log_file.c

create_windows.c

cylin_fading.c

cylin_slab.c

dance.script

defines.h

dihedral_angles.c

discard.c

disp_color_cap.c

display_init.c

disulfide_bonds.c

dock.c

docking.xpm

docking_project.c

docking_refresh.c

docking_resize.c

docking_window.c

draw_bottom.c

draw_comparison.c

draw_labels.c

draw_planes.c

draw_plots.c

draw_ramachandran.c

draw_system.c

draw_tags.c

draw_titles.c

draw_top.c

draw_venn.c

draw_wheel.c

eat_left_char.c

eat_right_char.c

errmsg.c

event_loop.c

ex2doubles.c

ex2ints.c

ex_fading_steps.c

ex_rot_steps.c

ex_slab_steps.c

ex_trans_steps.c

exclude.c

exclude_distant.c

execute_command1.c

execute_command2.c

execute_script.c

extent.c

extract_args.c

extract_double.c

extract_field.c

extract_index.c

extract_int.c

extract_ncaco.c

extract_phrase.c

extract_sequence.c

extract_serials.c

extract_token.c

fading.c

fading_shift.c

fileformat.c

flipvector.c

font.c

foreground.c

free_memory.c

free_runtime.c

full_colors.c

full_select.c

garlic.c

garlic.xpm

gen_hybonds.c

gen_plane.c

geo.script

geomcenter.c

half_cylin_fading.c

half_cylin_slab.c

half_sphere_fading.c

half_sphere_slab.c

headerline.c

hide.c

hide_backbone.c

hide_control.c

hide_no_refresh.c

hybond_style.c

hybonds.c

hydrophobicity.c

identify_button.c

include.c

init_buttons.c

init_colors.c

init_fading.c

init_header.c

init_hyphob.c

init_nearest.c

init_runtime.c

init_slab.c

input_refresh.c

insert

interpolate_color.c

is_old.c

is_pdb.c

is_polar.c

key_press.c

key_release.c

labels.c

list_exposed_polar.c

load.c

load_complex.c

load_font.c

load_sequence.c

log.c

main_refresh.c

main_resize.c

make_pixmap.c

masks.txt

mix_colors.c

mono.c

motion_notify.c

move_back_fading.c

move_back_slab.c

move_front_fading.c

move_front_slab.c

neighborhood.c

no_fading.c

no_slab.c

open_cfg_file.c

openfile_r.c

parse_color.c

parse_options.c

parse_sequence.c

pattern.c

pdb_atom.c

pdb_id.c

phe.pdb

pixel_from_rgbs.c

planar_fading.c

planar_slab.c

plane.c

plane_extent.c

plot.c

plot_mouse.c

position.c

prepare_backbone.c

prepare_color.c

prepare_cursor.c

prepare_oc.c

print_config.c

print_cursor_names.c

print_help.c

print_usage.c

print_version.c

project_atoms.c

project_planes.c

purge

quick_select.c

radius.c

rainbow.script

rama_frame.c

rama_mouse.c

ramachandran.c

read_config.c

read_fasta.c

read_file.c

read_pdb.c

realloc_pdb.c

refresh_pixmap.c

replace_command.c

representative_atoms.c

reset_pos_flag.c

residue_names.c

residue_ranges.c

rgbs_from_xcolor.c

rotate.c

rotate_plane.c

rotation_angle.c

sample.fasta

sample.script

save.c

save_seq_w_numbers.c

save_sequence.c

scalar_product.c

scale.c

select.c

select_above.c

select_alternate.c

select_below.c

select_cis_trans.c

select_complement.c

select_events.c

select_hetero.c

select_model.c

select_sequence.c

select_sphere.c

select_to_stdout.c

sequence.c

sequence_from.c

show.c

show_backbone.c

show_no_refresh.c

single_bond.pdb

size_hints.c

skip_keyword.c

slab.c

slab_shift.c

sp2.c

sp2_color.c

spacefill.c

spacefill_color.c

special_select.c

sphere_fading.c

sphere_slab.c

ssb.c

stereo.c

stereo_data.c

strong_bonds.c

system.xpm

tag.c

tag_position.c

text_background.c

text_foreground.c

title.c

translate.c

translate_complex.c

translate_plane.c

translation_shift.c

trp.pdb

truncate_comm.c

typedefs.h

vector_product.c

venn.c

warnmsg.c

weight_colors.c

wheel.c

window.c

wmhints.c

words

write_hints.c

write_line.c

zebra.c

Show diffs side-by-side

added added

removed removed

color.c

/*=============================================================================

color.c

Purpose:

Execute color command: assign the requested color scheme to all

currently selected atoms in each caught complex.

Input:

(1) Pointer to MolComplexS structure, with macromol. complexes.

(2) The number of macromolecular complexes.

(3) Pointer to RuntimeS structure, with some runtime data.

(4) Pointer to ConfigS structure, with configuration data.

(5) Pointer to GUIS structure, with GUI data.

(6) Pointer to NearestAtomS structure.

(7) The number of pixels in the main window free area.

(8) Pointer to refreshI.

(9) String which contains the color scheme name.

Output:

(1) The hiddenF set for each atom in each caught complex.

(2) Return value.

Return value:

(1) Positive (command) code on success.

(2) Negative (error) code on failure.

========includes:============================================================*/

#include <stdio.h>

#include <string.h>

#include <X11/Xlib.h>

#include <X11/Xutil.h>

#include <X11/Xos.h>

#include <X11/Xatom.h>

#include "defines.h"

#include "commands.h"

#include "typedefs.h"

/*======function prototypes:=================================================*/

int FullColors_ (MolComplexS *, int, GUIS *, char *);

char *ExtractToken_ (char *, int, char *, char *);

int ColorSchemes_ (MolComplexS *, int, GUIS *, char *);

size_t MainRefresh_ (MolComplexS *, int,

RuntimeS *, ConfigS *, GUIS *,

NearestAtomS *, size_t, unsigned int);

int ControlRefresh_ (MolComplexS *, ConfigS *, GUIS *);

/*======execute color command:===============================================*/

int Color_ (MolComplexS *mol_complexSP, int mol_complexesN,

RuntimeS *runtimeSP,

ConfigS *configSP, GUIS *guiSP,

NearestAtomS *nearest_atomSP, size_t pixelsN,

unsigned int *refreshIP, char *stringP)

{

char *commandP;

char *remainderP;

char tokenA[STRINGSIZE];

int n;

/* Try to interpret the string as the full color */

/* specification. Use the original command string: */

commandP = runtimeSP->curr_commandA;

if (FullColors_ (mol_complexSP, mol_complexesN, guiSP, commandP) > 0)

{

(*refreshIP)++;

MainRefresh_ (mol_complexSP, mol_complexesN,

runtimeSP, configSP, guiSP,

nearest_atomSP, pixelsN, *refreshIP);

ControlRefresh_ (mol_complexSP + runtimeSP->default_complexI,

configSP, guiSP);

return COMMAND_COLOR;

}

/* Extract the color scheme name: */

remainderP = ExtractToken_ (tokenA, STRINGSIZE, stringP, " \t\n");

if (!remainderP)

{

strcpy (runtimeSP->messageA, "Color scheme specification missing!");

runtimeSP->message_length = strlen (runtimeSP->messageA);

return ERROR_NO_SCHEME;

}

/* Assign the requested predefined colors to all selected atoms: */

/** If some simple color scheme is requested: **/

n = ColorSchemes_ (mol_complexSP, mol_complexesN, guiSP, tokenA);

/** If scheme is not recognized: **/

if (n <= 0)

{

sprintf (runtimeSP->messageA,

100

"Color scheme %s is not available!", tokenA);

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runtimeSP->message_length = strlen (runtimeSP->messageA);

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return ERROR_BAD_SCHEME;

103

}

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/* Refresh the main window: */

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(*refreshIP)++;

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MainRefresh_ (mol_complexSP, mol_complexesN, runtimeSP, configSP, guiSP,

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nearest_atomSP, pixelsN, *refreshIP);

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/* Refresh the control window: */

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ControlRefresh_ (mol_complexSP + runtimeSP->default_complexI, configSP, guiSP);

112

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/* Return positive value on success: */

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return COMMAND_COLOR;

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}

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117

/*===========================================================================*/

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