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  • Committer: Bazaar Package Importer
  • Author(s): Barry deFreese
  • Date: 2005-09-27 15:38:20 UTC
  • mfrom: (1.1.3 upstream) (2.1.1 sarge)
  • Revision ID: james.westby@ubuntu.com-20050927153820-1t1sta0qirjpxaar
Tags: 6.1.20050429-1ubuntu1
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api/salpedit.c
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/* $Id: salpedit.c,v 6.31 2003/11/07 21:22:06 kans Exp $ */
 
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/* $Id: salpedit.c,v 6.32 2005/04/13 14:56:08 kans Exp $ */
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#include <ncbi.h>
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#include <ncbimisc.h> /* ValNodeLen */
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#include <sequtil.h> /* for GetScoreAndEvalue, SeqIdDupList */
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#include <salpedit.h>
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#include <salpacc.h>
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#include <seqport.h>
 
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#include <salsap.h>
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#define MIN_DIAG_LEN    20      /*minimal amount of overlap required for build_overlap_list<-MergeTwoAlignList */
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}
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static SeqAlignPtr LIBCALL is_salp_in_sap (SeqAnnotPtr sap, Uint1 choice)
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{
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  SeqAlignPtr      salp = NULL;
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  if (sap != NULL) {
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     for (; sap!= NULL; sap=sap->next) {
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        if (sap->type == choice) {
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           salp = (SeqAlignPtr) sap->data;
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           return salp;
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        }
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     }
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  }
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  return NULL;
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}
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/*******************************************
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***
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***  SeqAlignBioseqDeleteById