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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2007-02-21 09:07:33 UTC
  • mfrom: (1.1.1 upstream)
  • Revision ID: james.westby@ubuntu.com-20070221090733-ttdj0bl7yes4to8f
Tags: 2.03-1
* New upstream release.
* Mended the watch file.
* Updated the manpage.

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kalign2_hirschberg_dna.h
 
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/*
 
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        kalign2_hirschberg_dna.h
 
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        Released under GPL - see the 'COPYING' file   
 
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        Copyright (C) 2006 Timo Lassmann <timolassmann@gmail.com>
 
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        This program is free software; you can redistribute it and/or modify
 
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        it under the terms of the GNU General Public License as published by
 
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        the Free Software Foundation; either version 2 of the License, or
 
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        any later version.
 
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        This program is distributed in the hope that it will be useful,
 
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        but WITHOUT ANY WARRANTY; without even the implied warranty of
 
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        MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 
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        GNU General Public License for more details.
 
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        You should have received a copy of the GNU General Public License
 
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        along with this program; if not, write to the Free Software
 
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        Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 
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        Please send bug reports, comments etc. to:
 
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        timolassmann@gmail.com
 
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*/
 
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int* hirsch_dna_ss_dyn(float**subm, const int* seq1,const int* seq2,struct hirsch_mem* hm, int* hirsch_path);
 
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int* hirsch_align_two_dna_ss_vector(float**subm,const int* seq1,const int* seq2,struct hirsch_mem* hm,int* hirsch_path,float input_states[],int old_cor[]);
 
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struct states* foward_hirsch_dna_ss_dyn(float**subm,const int* seq1,const int* seq2,struct hirsch_mem* hm);
 
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struct states* backward_hirsch_dna_ss_dyn(float**subm,const int* seq1,const int* seq2,struct hirsch_mem* hm);
 
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int* hirsch_dna_ps_dyn(const float* prof1,const int* seq2,struct hirsch_mem* hm, int* hirsch_path,int sip);
 
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int* hirsch_align_two_dna_ps_vector(const float* prof1,const int* seq2,struct hirsch_mem* hm,int* hirsch_path,float input_states[],int old_cor[],int sip);
 
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struct states* foward_hirsch_dna_ps_dyn(const float* prof1,const int* seq2,struct hirsch_mem* hm,int sip);
 
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struct states* backward_hirsch_dna_ps_dyn(const float* prof1,const int* seq2,struct hirsch_mem* hm,int sip);
 
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int* hirsch_dna_pp_dyn(const float* prof1,const float* prof2,struct hirsch_mem* hm, int* hirsch_path);
 
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int* hirsch_align_two_dna_pp_vector(const float* prof1,const float* prof2,struct hirsch_mem* hm,int* hirsch_path,float input_states[],int old_cor[]);
 
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struct states* foward_hirsch_dna_pp_dyn(const float* prof1,const float* prof2,struct hirsch_mem* hm);
 
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struct states* backward_hirsch_dna_pp_dyn(const float* prof1,const float* prof2,struct hirsch_mem* hm);