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Committer: Bazaar Package Importer
Author(s): Johannes Ring
Date: 2008-09-16 08:41:20 UTC
Revision ID: james.westby@ubuntu.com-20080916084120-i8k3u6lhx3mw3py3

Tags: upstream-0.9.2

Import upstream version 0.9.2

files added:

.hg_archival.txt

.hgignore

.hgtags

AUTHORS

COPYING

ChangeLog

INSTALL

README

SConstruct

TODO

bench

bench/README

bench/bench

bench/fem

bench/fem/assembly

bench/fem/assembly/cpp

bench/fem/assembly/cpp/SConstruct

bench/fem/assembly/cpp/bench.log

bench/fem/assembly/cpp/forms

bench/fem/assembly/cpp/forms.h

bench/fem/assembly/cpp/forms/Elasticity3D.form

bench/fem/assembly/cpp/forms/Elasticity3D.h

bench/fem/assembly/cpp/forms/NSEMomentum3D.form

bench/fem/assembly/cpp/forms/NSEMomentum3D.h

bench/fem/assembly/cpp/forms/Poisson2DP1.form

bench/fem/assembly/cpp/forms/Poisson2DP1.h

bench/fem/assembly/cpp/forms/Poisson2DP2.form

bench/fem/assembly/cpp/forms/Poisson2DP2.h

bench/fem/assembly/cpp/forms/Poisson2DP3.form

bench/fem/assembly/cpp/forms/Poisson2DP3.h

bench/fem/assembly/cpp/forms/StabStokes2D.form

bench/fem/assembly/cpp/forms/StabStokes2D.h

bench/fem/assembly/cpp/forms/THStokes2D.form

bench/fem/assembly/cpp/forms/THStokes2D.h

bench/fem/assembly/cpp/main.cpp

bench/fem/assembly/python

bench/fem/assembly/python/bench.py

bench/fem/backends

bench/fem/backends/run_benchmark.py

bench/fem/backends/test_various_backends.py

bench/fem/convergence

bench/fem/convergence/Poisson2D_1.form

bench/fem/convergence/Poisson2D_1.h

bench/fem/convergence/Poisson2D_2.form

bench/fem/convergence/Poisson2D_2.h

bench/fem/convergence/Poisson2D_3.form

bench/fem/convergence/Poisson2D_3.h

bench/fem/convergence/Poisson2D_4.form

bench/fem/convergence/Poisson2D_4.h

bench/fem/convergence/Poisson2D_5.form

bench/fem/convergence/Poisson2D_5.h

bench/fem/convergence/Poisson3D_1.form

bench/fem/convergence/Poisson3D_1.h

bench/fem/convergence/Poisson3D_2.form

bench/fem/convergence/Poisson3D_2.h

bench/fem/convergence/Poisson3D_3.form

bench/fem/convergence/Poisson3D_3.h

bench/fem/convergence/Poisson3D_4.form

bench/fem/convergence/Poisson3D_4.h

bench/fem/convergence/Poisson3D_5.form

bench/fem/convergence/Poisson3D_5.h

bench/fem/convergence/README

bench/fem/convergence/SConstruct

bench/fem/convergence/bench.log

bench/fem/convergence/bench.py

bench/fem/convergence/main.cpp

bench/fem/jit

bench/fem/jit/bench.py

bench/fem/passembly

bench/fem/passembly/Nonlinear2D.form

bench/fem/passembly/Nonlinear2D.h

bench/fem/passembly/Poisson.form

bench/fem/passembly/Poisson.h

bench/fem/passembly/Poisson2D.h

bench/fem/passembly/Poisson3D_1.form

bench/fem/passembly/Poisson3D_1.h

bench/fem/passembly/SConstruct

bench/fem/passembly/assemble.h

bench/fem/passembly/getopts.cpp

bench/fem/passembly/getopts.h

bench/fem/passembly/main.cpp

bench/fem/passembly/parallel_poisson_cube.sh

bench/fem/passembly/plot.py

bench/fem/passembly/plot_parallel_assembly_time.sh

bench/fem/passembly/sequential_poisson_cube.sh

bench/la

bench/la/bench.log

bench/la/bench.py

bench/la/sparse-matrix

bench/la/sparse-matrix/Poisson.form

bench/la/sparse-matrix/Poisson.h

bench/la/sparse-matrix/SConstruct

bench/la/sparse-matrix/VectorPoisson.form

bench/la/sparse-matrix/VectorPoisson.h

bench/la/sparse-matrix/main.cpp

bench/la/vector

bench/la/vector/SConstruct

bench/la/vector/main.cpp

bench/mesh

bench/mesh/SConstruct

bench/mesh/bench.log

bench/mesh/bench.py

bench/mesh/main.cpp

bench/ode

bench/ode/reaction

bench/ode/reaction/README

bench/ode/reaction/bench-domain.log

bench/ode/reaction/bench-domain.py

bench/ode/reaction/bench-overhead.log

bench/ode/reaction/bench-overhead.py

bench/ode/reaction/bench-plot.py

bench/ode/reaction/bench-tol.log

bench/ode/reaction/bench-tol.py

bench/ode/reaction/bench.log

bench/ode/reaction/bench.py

bench/ode/reaction/benchutil.py

bench/ode/reaction/checkerror.py

bench/ode/reaction/main.cpp

bench/ode/reaction/parameters-bench.xml

bench/ode/reaction/parameters-plot.xml

bench/ode/reaction/parameters-reference.xml

bench/ode/reaction/reference_1000.data

bench/ode/reaction/reference_16000.data

bench/ode/reaction/reference_2000.data

bench/ode/reaction/reference_4000.data

bench/ode/reaction/reference_8000.data

bench/ode/wave

bench/ode/wave/bench.log

bench/ode/wave/bench.py

bench/ode/wave/main.cpp

bench/ode/wave/parameters-bench.xml

bench/ode/wave/slit.xml.gz

data

data/SConscript

data/graphs

data/graphs/directed_graph.xml

data/graphs/undirected_graph.xml

data/meshes

data/meshes/README

data/meshes/aneurysm.xml.gz

data/meshes/circle.xml.gz

data/meshes/cylinder.xml.gz

data/meshes/dolfin-1.xml.gz

data/meshes/dolfin-2.xml.gz

data/meshes/dolfin-inside-1.xml.gz

data/meshes/dolfin-inside-2.xml.gz

data/meshes/gear.xml.gz

data/meshes/meshbc.xml.gz

data/meshes/slit.xml.gz

data/meshes/snake.xml.gz

data/meshes/snake_hole.xml.gz

data/meshes/sphere.xml.gz

data/meshes/tetmesh-1.xml.gz

data/meshes/tetmesh-16.xml.gz

data/meshes/tetmesh-4.xml.gz

data/meshes/tetmesh-8.xml.gz

data/meshes/tetmesh_24_8_8.xml.gz

data/meshes/tetmesh_LES_10_2_7.xml.gz

data/meshes/tetmesh_backward_facing_step_32_8_8.xml.gz

data/meshes/tetmesh_bluff_body_32_8_8.xml.gz

data/meshes/tetrahedron.xml.gz

data/meshes/torso.xml.gz

data/meshes/triangle.xml.gz

data/meshes/trimesh-1.xml.gz

data/meshes/trimesh-128.xml.gz

data/meshes/trimesh-16.xml.gz

data/meshes/trimesh-2.xml.gz

data/meshes/trimesh-32.xml.gz

data/meshes/trimesh-4.xml.gz

data/meshes/trimesh-64.xml.gz

data/meshes/trimesh-8.xml.gz

data/meshes/two_particles.xml.gz

data/meshes/unstruct-trimesh-1.xml.gz

data/meshes/unstruct-trimesh-2.xml.gz

demo

demo/SConscript

demo/fem

demo/fem/assembly

demo/fem/assembly/cpp

demo/fem/assembly/cpp/ReactionDiffusion.form

demo/fem/assembly/cpp/ReactionDiffusion.h

demo/fem/assembly/cpp/SConstruct

demo/fem/assembly/cpp/main.cpp

demo/fem/assembly/python

demo/fem/assembly/python/README

demo/fem/simple

demo/fem/simple/cpp

demo/fem/simple/cpp/SConstruct

demo/fem/simple/cpp/main.cpp

demo/fem/simple/python

demo/fem/simple/python/demo.py

demo/fem/simple/tetrahedron.xml.gz

demo/function

demo/function/eval

demo/function/eval/cpp

demo/function/eval/cpp/Projection.form

demo/function/eval/cpp/Projection.h

demo/function/eval/cpp/SConstruct

demo/function/eval/cpp/main.cpp

demo/function/eval/python

demo/function/eval/python/demo.py

demo/function/projection-interpolation

demo/function/projection-interpolation/cpp

demo/function/projection-interpolation/cpp/README

demo/function/projection-interpolation/python

demo/function/projection-interpolation/python/demo.py

demo/function/restriction

demo/function/restriction/cpp

demo/function/restriction/cpp/README

demo/function/restriction/python

demo/function/restriction/python/demo.py

demo/la

demo/la/block-matrix

demo/la/block-matrix/cpp

demo/la/block-matrix/cpp/SConstruct

demo/la/block-matrix/cpp/main.cpp

demo/la/block-matrix/python

demo/la/block-matrix/python/demo.py

demo/la/eigensolver

demo/la/eigensolver/cpp

demo/la/eigensolver/cpp/SConstruct

demo/la/eigensolver/cpp/main.cpp

demo/la/eigensolver/python

demo/la/eigensolver/python/demo.py

demo/la/trilinos

demo/la/trilinos/python

demo/la/trilinos/python/demo.py

demo/la/trilinos/python/demo2.py

demo/mesh

demo/mesh/ale

demo/mesh/ale/cpp

demo/mesh/ale/cpp/SConstruct

demo/mesh/ale/cpp/main.cpp

demo/mesh/ale/python

demo/mesh/ale/python/demo.py

demo/mesh/built-in

demo/mesh/built-in/cpp

demo/mesh/built-in/cpp/README

demo/mesh/built-in/python

demo/mesh/built-in/python/demo.py

demo/mesh/intersection

demo/mesh/intersection/cpp

demo/mesh/intersection/cpp/SConstruct

demo/mesh/intersection/cpp/main.cpp

demo/mesh/intersection/python

demo/mesh/intersection/python/demo.py

demo/mesh/meshfunction

demo/mesh/meshfunction/cpp

demo/mesh/meshfunction/cpp/SConstruct

demo/mesh/meshfunction/cpp/main.cpp

demo/mesh/meshfunction/cpp/plot.py

demo/mesh/meshfunction/mesh2D.xml.gz

demo/mesh/meshfunction/meshfunction.xml

demo/mesh/meshfunction/python

demo/mesh/meshfunction/python/demo.py

demo/mesh/partitioning

demo/mesh/partitioning/cpp

demo/mesh/partitioning/cpp/SConstruct

demo/mesh/partitioning/cpp/main.cpp

demo/mesh/partitioning/cpp/plotpartitions

demo/mesh/partitioning/cpp/unitsquare.xml.gz

demo/mesh/partitioning/python

demo/mesh/partitioning/python/demo.py

demo/mesh/partitioning/python/unitsquare.xml.gz

demo/mesh/refinement

demo/mesh/refinement/cpp

demo/mesh/refinement/cpp/SConstruct

demo/mesh/refinement/cpp/main.cpp

demo/mesh/refinement/python

demo/mesh/refinement/python/demo.py

demo/mesh/subdomains

demo/mesh/subdomains/cpp

demo/mesh/subdomains/cpp/SConstruct

demo/mesh/subdomains/cpp/main.cpp

demo/mesh/subdomains/python

demo/mesh/subdomains/python/demo.py

demo/mesh/submesh

demo/mesh/submesh/cpp

demo/mesh/submesh/cpp/SConstruct

demo/mesh/submesh/cpp/main.cpp

demo/mesh/submesh/python

demo/mesh/submesh/python/demo.py

demo/ode

demo/ode/aliev-panfilov

demo/ode/aliev-panfilov/cpp

demo/ode/aliev-panfilov/cpp/SConstruct

demo/ode/aliev-panfilov/cpp/main.cpp

demo/ode/aliev-panfilov/cpp/plot.py

demo/ode/aliev-panfilov/python

demo/ode/aliev-panfilov/python/demo.py

demo/ode/collection

demo/ode/collection/cpp

demo/ode/collection/cpp/SConstruct

demo/ode/collection/cpp/main.cpp

demo/ode/collection/cpp/plot.py

demo/ode/complex

demo/ode/complex/cpp

demo/ode/complex/cpp/SConstruct

demo/ode/complex/cpp/main.cpp

demo/ode/complex/cpp/plot.py

demo/ode/courtemanche

demo/ode/courtemanche/cpp

demo/ode/courtemanche/cpp/SConstruct

demo/ode/courtemanche/cpp/main.cpp

demo/ode/courtemanche/cpp/plot.py

demo/ode/harmonic

demo/ode/harmonic/cpp

demo/ode/harmonic/cpp/SConstruct

demo/ode/harmonic/cpp/main.cpp

demo/ode/harmonic/cpp/main_solvedual.cpp

demo/ode/harmonic/cpp/plot.py

demo/ode/harmonic/cpp/plot_dual.py

demo/ode/lorenz

demo/ode/lorenz/cpp

demo/ode/lorenz/cpp/SConstruct

demo/ode/lorenz/cpp/main.cpp

demo/ode/lorenz/cpp/plot.py

demo/ode/lorenz/cpp/solution_dual.py

demo/ode/lorenz/cpp/stabilityfactors.py

demo/ode/lorenz/python

demo/ode/lorenz/python/demo.py

demo/ode/lorenz/python/plot.py

demo/ode/method-weights

demo/ode/method-weights/cpp

demo/ode/method-weights/cpp/SConstruct

demo/ode/method-weights/cpp/main.cpp

demo/ode/stiff

demo/ode/stiff/cpp

demo/ode/stiff/cpp/SConstruct

demo/ode/stiff/cpp/TestProblem1.h

demo/ode/stiff/cpp/TestProblem2.h

demo/ode/stiff/cpp/TestProblem3.h

demo/ode/stiff/cpp/TestProblem4.h

demo/ode/stiff/cpp/TestProblem5.h

demo/ode/stiff/cpp/TestProblem6.h

demo/ode/stiff/cpp/TestProblem7.h

demo/ode/stiff/cpp/TestProblem8.h

demo/ode/stiff/cpp/TestProblem9.h

demo/ode/stiff/cpp/main.cpp

demo/ode/stiff/cpp/plot.py

demo/ode/stiff/cpp/run-tests.sh

demo/ode/tentusscher

demo/ode/tentusscher/cpp

demo/ode/tentusscher/cpp/SConstruct

demo/ode/tentusscher/cpp/main.cpp

demo/ode/tentusscher/cpp/plot.py

demo/ode/tentusscher/cpp/tentusscher.h

demo/pde

demo/pde/adaptive-poisson

demo/pde/adaptive-poisson/cpp

demo/pde/adaptive-poisson/cpp/README

demo/pde/adaptive-poisson/python

demo/pde/adaptive-poisson/python/demo.py

demo/pde/advection-diffusion

demo/pde/advection-diffusion/cpp

demo/pde/advection-diffusion/cpp/AdvectionDiffusion.form

demo/pde/advection-diffusion/cpp/AdvectionDiffusion.h

demo/pde/advection-diffusion/cpp/SConstruct

demo/pde/advection-diffusion/cpp/Velocity.form

demo/pde/advection-diffusion/cpp/Velocity.h

demo/pde/advection-diffusion/cpp/main.cpp

demo/pde/advection-diffusion/mesh.xml.gz

demo/pde/advection-diffusion/python

demo/pde/advection-diffusion/python/demo.py

demo/pde/advection-diffusion/subdomains.xml.gz

demo/pde/advection-diffusion/velocity.xml.gz

demo/pde/bcs

demo/pde/bcs/cpp

demo/pde/bcs/cpp/Poisson.form

demo/pde/bcs/cpp/Poisson.h

demo/pde/bcs/cpp/SConstruct

demo/pde/bcs/cpp/main.cpp

demo/pde/bcs/python

demo/pde/bcs/python/demo.py

demo/pde/cahn-hilliard

demo/pde/cahn-hilliard/cpp

demo/pde/cahn-hilliard/cpp/CahnHilliard2D.cpp

demo/pde/cahn-hilliard/cpp/CahnHilliard2D.form

demo/pde/cahn-hilliard/cpp/CahnHilliard2D.h

demo/pde/cahn-hilliard/cpp/CahnHilliard3D.cpp

demo/pde/cahn-hilliard/cpp/CahnHilliard3D.form

demo/pde/cahn-hilliard/cpp/CahnHilliard3D.h

demo/pde/cahn-hilliard/cpp/SConstruct

demo/pde/cahn-hilliard/cpp/main.cpp

demo/pde/cahn-hilliard/python

demo/pde/cahn-hilliard/python/README

demo/pde/dg

demo/pde/dg/advection-diffusion

demo/pde/dg/advection-diffusion/cpp

demo/pde/dg/advection-diffusion/cpp/AdvectionDiffusion.form

demo/pde/dg/advection-diffusion/cpp/AdvectionDiffusion.h

demo/pde/dg/advection-diffusion/cpp/Projection.form

demo/pde/dg/advection-diffusion/cpp/Projection.h

demo/pde/dg/advection-diffusion/cpp/SConstruct

demo/pde/dg/advection-diffusion/cpp/Velocity.form

demo/pde/dg/advection-diffusion/cpp/Velocity.h

demo/pde/dg/advection-diffusion/cpp/main.cpp

demo/pde/dg/advection-diffusion/mesh.xml.gz

demo/pde/dg/advection-diffusion/python

demo/pde/dg/advection-diffusion/python/demo.py

demo/pde/dg/advection-diffusion/python/functions2D.h

demo/pde/dg/advection-diffusion/velocity.xml.gz

demo/pde/dg/poisson

demo/pde/dg/poisson/cpp

demo/pde/dg/poisson/cpp/P1Projection.form

demo/pde/dg/poisson/cpp/P1Projection.h

demo/pde/dg/poisson/cpp/Poisson.form

demo/pde/dg/poisson/cpp/Poisson.h

demo/pde/dg/poisson/cpp/SConstruct

demo/pde/dg/poisson/cpp/main.cpp

demo/pde/dg/poisson/cpp/plot.py

demo/pde/dg/poisson/python

demo/pde/dg/poisson/python/demo.py

demo/pde/dielectric

demo/pde/dielectric/cpp

demo/pde/dielectric/cpp/README

demo/pde/dielectric/python

demo/pde/dielectric/python/demo.py

demo/pde/elasticity

demo/pde/elasticity/cpp

demo/pde/elasticity/cpp/Elasticity.form

demo/pde/elasticity/cpp/Elasticity.h

demo/pde/elasticity/cpp/SConstruct

demo/pde/elasticity/cpp/main.cpp

demo/pde/elasticity/cpp/plot.py

demo/pde/elasticity/python

demo/pde/elasticity/python/demo.py

demo/pde/elastodynamics

demo/pde/elastodynamics/cpp

demo/pde/elastodynamics/cpp/DG0_eps_xx.form

demo/pde/elastodynamics/cpp/DG0_eps_xx.h

demo/pde/elastodynamics/cpp/ElastoDynamics.form

demo/pde/elastodynamics/cpp/ElastoDynamics.h

demo/pde/elastodynamics/cpp/SConstruct

demo/pde/elastodynamics/cpp/main.cpp

demo/pde/functional

demo/pde/functional/cpp

demo/pde/functional/cpp/EnergyNorm.form

demo/pde/functional/cpp/EnergyNorm.h

demo/pde/functional/cpp/SConstruct

demo/pde/functional/cpp/main.cpp

demo/pde/functional/python

demo/pde/functional/python/demo.py

demo/pde/lift-drag

demo/pde/lift-drag/cpp

demo/pde/lift-drag/cpp/Drag.form

demo/pde/lift-drag/cpp/Drag.h

demo/pde/lift-drag/cpp/Lift.form

demo/pde/lift-drag/cpp/Lift.h

demo/pde/lift-drag/cpp/Pressure.form

demo/pde/lift-drag/cpp/Pressure.h

demo/pde/lift-drag/cpp/SConstruct

demo/pde/lift-drag/cpp/main.cpp

demo/pde/lift-drag/mesh.xml.gz

demo/pde/lift-drag/pressure.xml.gz

demo/pde/lift-drag/python

demo/pde/lift-drag/python/demo.py

demo/pde/mixed-poisson

demo/pde/mixed-poisson/cpp

demo/pde/mixed-poisson/cpp/MixedPoisson.form

demo/pde/mixed-poisson/cpp/MixedPoisson.h

demo/pde/mixed-poisson/cpp/P1Projection.form

demo/pde/mixed-poisson/cpp/P1Projection.h

demo/pde/mixed-poisson/cpp/SConstruct

demo/pde/mixed-poisson/cpp/main.cpp

demo/pde/mixed-poisson/cpp/plot.py

demo/pde/mixed-poisson/python

demo/pde/mixed-poisson/python/demo.py

demo/pde/nonlinear-poisson

demo/pde/nonlinear-poisson/cpp

demo/pde/nonlinear-poisson/cpp/NonlinearPoisson.form

demo/pde/nonlinear-poisson/cpp/NonlinearPoisson.h

demo/pde/nonlinear-poisson/cpp/NonlinearPoisson.py

demo/pde/nonlinear-poisson/cpp/SConstruct

demo/pde/nonlinear-poisson/cpp/main.cpp

demo/pde/nonlinear-poisson/cpp/plot.py

demo/pde/nonlinear-poisson/python

demo/pde/nonlinear-poisson/python/demo.py

demo/pde/optimization

demo/pde/optimization/python

demo/pde/optimization/python/demo.py

demo/pde/periodic

demo/pde/periodic/cpp

demo/pde/periodic/cpp/Poisson.form

demo/pde/periodic/cpp/Poisson.h

demo/pde/periodic/cpp/SConstruct

demo/pde/periodic/cpp/main.cpp

demo/pde/periodic/python

demo/pde/periodic/python/demo.py

demo/pde/poisson

demo/pde/poisson/cpp

demo/pde/poisson/cpp/Poisson.h

demo/pde/poisson/cpp/Poisson.ufl

demo/pde/poisson/cpp/README

demo/pde/poisson/cpp/SConstruct

demo/pde/poisson/cpp/main.cpp

demo/pde/poisson/python

demo/pde/poisson/python/demo.py

demo/pde/poisson1D

demo/pde/poisson1D/cpp

demo/pde/poisson1D/cpp/Poisson.form

demo/pde/poisson1D/cpp/Poisson.h

demo/pde/poisson1D/cpp/SConstruct

demo/pde/poisson1D/cpp/main.cpp

demo/pde/poisson1D/python

demo/pde/poisson1D/python/demo.py

demo/pde/stokes

demo/pde/stokes/stabilized

demo/pde/stokes/stabilized/cpp

demo/pde/stokes/stabilized/cpp/SConstruct

demo/pde/stokes/stabilized/cpp/Stokes.form

demo/pde/stokes/stabilized/cpp/Stokes.h

demo/pde/stokes/stabilized/cpp/main.cpp

demo/pde/stokes/stabilized/cpp/plot.py

demo/pde/stokes/stabilized/python

demo/pde/stokes/stabilized/python/demo.py

demo/pde/stokes/stabilized/subdomains.xml.gz

demo/pde/stokes/taylor-hood

demo/pde/stokes/taylor-hood/cpp

demo/pde/stokes/taylor-hood/cpp/SConstruct

demo/pde/stokes/taylor-hood/cpp/Stokes.form

demo/pde/stokes/taylor-hood/cpp/Stokes.h

demo/pde/stokes/taylor-hood/cpp/main.cpp

demo/pde/stokes/taylor-hood/cpp/plot.py

demo/pde/stokes/taylor-hood/python

demo/pde/stokes/taylor-hood/python/demo.py

demo/pde/stokes/taylor-hood/subdomains.xml.gz

demo/pde/sym-dirichlet-bc

demo/pde/sym-dirichlet-bc/cpp

demo/pde/sym-dirichlet-bc/cpp/Poisson.form

demo/pde/sym-dirichlet-bc/cpp/Poisson.h

demo/pde/sym-dirichlet-bc/cpp/SConstruct

demo/pde/sym-dirichlet-bc/cpp/main.cpp

demo/pde/sym-dirichlet-bc/python

demo/pde/sym-dirichlet-bc/python/demo.py

demo/pde/sym-dirichlet-bc/python/dg-demo.py

demo/pde/sym-dirichlet-bc/python/dg-speed-up-test.py

demo/pde/sym-dirichlet-bc/python/speed-up-test.py

demo/pde/waveguide

demo/pde/waveguide/cpp

demo/pde/waveguide/cpp/Forms.form

demo/pde/waveguide/cpp/Forms.h

demo/pde/waveguide/cpp/Forms.py

demo/pde/waveguide/cpp/SConstruct

demo/pde/waveguide/cpp/main.cpp

demo/pde/waveguide/python

demo/pde/waveguide/python/demo.py

demo/pde/waveguide/waveguide_TM_cutoff_modes.pdf

demo/plot

demo/plot/cpp

demo/plot/cpp/SConstruct

demo/plot/cpp/dolfin-2.xml.gz

demo/plot/cpp/main.cpp

demo/plot/python

demo/plot/python/demo.py

demo/plot/python/dolfin-2.xml.gz

demo/quadrature

demo/quadrature/cpp

demo/quadrature/cpp/SConstruct

demo/quadrature/cpp/main.cpp

demo/quadrature/python

demo/quadrature/python/demo.py

doc/SConscript

doc/man

doc/man/man1

doc/man/man1/dolfin-convert.1.gz

doc/man/man1/dolfin-order.1.gz

doc/manual

doc/manual/Makefile

doc/manual/algorithm.sty

doc/manual/bibliography.bib

doc/manual/chapters

doc/manual/chapters/about.tex

doc/manual/chapters/codingstyle.tex

doc/manual/chapters/contributing-dolfin.tex

doc/manual/chapters/contributing.tex

doc/manual/chapters/contributors.tex

doc/manual/chapters/design.tex

doc/manual/chapters/functions.tex

doc/manual/chapters/installation-downloading.tex

doc/manual/chapters/installation.tex

doc/manual/chapters/introduction.tex

doc/manual/chapters/io.tex

doc/manual/chapters/license.tex

doc/manual/chapters/linearalgebra.tex

doc/manual/chapters/logsystem.tex

doc/manual/chapters/mesh.tex

doc/manual/chapters/nonlinearsolver.tex

doc/manual/chapters/numbering.tex

doc/manual/chapters/numbering_common.tex

doc/manual/chapters/ode.tex

doc/manual/chapters/parameters.tex

doc/manual/chapters/pde.tex

doc/manual/chapters/quickstart.tex

doc/manual/chapters/referencecells.tex

doc/manual/chapters/referencecells_common.tex

doc/manual/chapters/solvers.tex

doc/manual/dia

doc/manual/dia/class-diagram-la.dia

doc/manual/dolfin-user-manual.pdf

doc/manual/dolfin-user-manual.tex

doc/manual/eps

doc/manual/eps/class-diagram-la.eps

doc/manual/eps/dolfin-components.eps

doc/manual/eps/dolfin.eps

doc/manual/eps/edge_ordering.eps

doc/manual/eps/face_ordering.eps

doc/manual/eps/hexahedron.eps

doc/manual/eps/insertion.eps

doc/manual/eps/interval.eps

doc/manual/eps/mesh-components.eps

doc/manual/eps/mesh2d.eps

doc/manual/eps/mesh3d.eps

doc/manual/eps/numbering_example_quadrilaterals.eps

doc/manual/eps/numbering_example_triangles.eps

doc/manual/eps/ordering_example_tetrahedron.eps

doc/manual/eps/ordering_example_triangle.eps

doc/manual/eps/orientation_example_triangles.eps

doc/manual/eps/poisson.eps

doc/manual/eps/quadrilateral.eps

doc/manual/eps/reference_tetrahedron.eps

doc/manual/eps/reference_tetrahedron_entities.eps

doc/manual/eps/reference_triangle.eps

doc/manual/eps/reference_triangle_entities.eps

doc/manual/eps/tetrahedron.eps

doc/manual/eps/triangle.eps

doc/manual/eps/ufcfig.eps

doc/manual/fenicsmanual.cls

doc/manual/here.sty

doc/progr_reference

doc/progr_reference/html

doc/progr_reference/html/Doxyfile

doc/progr_reference/html/README

doc/progr_reference/html/head-doc_transparent.png

doc/progr_reference/html/mydot.png

doc/progr_reference/html/myfooter.inc

doc/progr_reference/html/myheader.inc

doc/progr_reference/tex

doc/progr_reference/tex/README

dolfin

dolfin/SConscript

dolfin/ale

dolfin/ale/ALE.cpp

dolfin/ale/ALE.h

dolfin/ale/ALEType.h

dolfin/ale/HarmonicSmoothing.cpp

dolfin/ale/HarmonicSmoothing.h

dolfin/ale/Poisson1D.form

dolfin/ale/Poisson1D.h

dolfin/ale/Poisson2D.form

dolfin/ale/Poisson2D.h

dolfin/ale/Poisson3D.form

dolfin/ale/Poisson3D.h

dolfin/ale/TransfiniteInterpolation.cpp

dolfin/ale/TransfiniteInterpolation.h

dolfin/ale/dolfin_ale.h

dolfin/common

dolfin/common/List.h

dolfin/common/NoDeleter.h

dolfin/common/TimeDependent.cpp

dolfin/common/TimeDependent.h

dolfin/common/Timer.h

dolfin/common/Variable.cpp

dolfin/common/Variable.h

dolfin/common/constants.h

dolfin/common/dolfin_common.h

dolfin/common/real.cpp

dolfin/common/real.h

dolfin/common/timing.cpp

dolfin/common/timing.h

dolfin/common/types.h

dolfin/common/unittest.h

dolfin/dolfin.h

dolfin/dolfin.pc.in

dolfin/fem

dolfin/fem/Assembler.cpp

dolfin/fem/Assembler.h

dolfin/fem/BoundaryCondition.cpp

dolfin/fem/BoundaryCondition.h

dolfin/fem/DirichletBC.cpp

dolfin/fem/DirichletBC.h

dolfin/fem/DofMap.cpp

dolfin/fem/DofMap.h

dolfin/fem/DofMapBuilder.cpp

dolfin/fem/DofMapBuilder.h

dolfin/fem/FiniteElement.cpp

dolfin/fem/FiniteElement.h

dolfin/fem/Form.cpp

dolfin/fem/Form.h

dolfin/fem/PeriodicBC.cpp

dolfin/fem/PeriodicBC.h

dolfin/fem/SparsityPatternBuilder.cpp

dolfin/fem/SparsityPatternBuilder.h

dolfin/fem/UFC.cpp

dolfin/fem/UFC.h

dolfin/fem/UFCCell.h

dolfin/fem/UFCMesh.h

dolfin/fem/VariationalProblem.cpp

dolfin/fem/VariationalProblem.h

dolfin/fem/assemble.cpp

dolfin/fem/assemble.h

dolfin/fem/dolfin_fem.h

dolfin/fem/pAssembler.cpp

dolfin/fem/pAssembler.h

dolfin/function

dolfin/function/Coefficient.cpp

dolfin/function/Coefficient.h

dolfin/function/Constant.cpp

dolfin/function/Constant.h

dolfin/function/Data.cpp

dolfin/function/Data.h

dolfin/function/Function.cpp

dolfin/function/Function.h

dolfin/function/FunctionSpace.cpp

dolfin/function/FunctionSpace.h

dolfin/function/SpecialFunctions.cpp

dolfin/function/SpecialFunctions.h

dolfin/function/SubFunction.h

dolfin/function/SubSpace.cpp

dolfin/function/SubSpace.h

dolfin/function/UFCFunction.cpp

dolfin/function/UFCFunction.h

dolfin/function/dolfin_function.h

dolfin/graph

dolfin/graph/DirectedClique.cpp

dolfin/graph/DirectedClique.h

dolfin/graph/Graph.cpp

dolfin/graph/Graph.h

dolfin/graph/GraphBuilder.cpp

dolfin/graph/GraphBuilder.h

dolfin/graph/GraphEditor.cpp

dolfin/graph/GraphEditor.h

dolfin/graph/GraphPartition.cpp

dolfin/graph/GraphPartition.h

dolfin/graph/UndirectedClique.cpp

dolfin/graph/UndirectedClique.h

dolfin/graph/dolfin_graph.h

dolfin/io

dolfin/io/File.cpp

dolfin/io/File.h

dolfin/io/GenericFile.cpp

dolfin/io/GenericFile.h

dolfin/io/MFile.cpp

dolfin/io/MFile.h

dolfin/io/MatlabFile.cpp

dolfin/io/MatlabFile.h

dolfin/io/NewXMLFile.cpp

dolfin/io/NewXMLFile.h

dolfin/io/NewXMLGraph.cpp

dolfin/io/NewXMLGraph.h

dolfin/io/NewXMLLocalMeshData.cpp

dolfin/io/NewXMLLocalMeshData.h

dolfin/io/NewXMLMatrix.cpp

dolfin/io/NewXMLMatrix.h

dolfin/io/NewXMLMesh.cpp

dolfin/io/NewXMLMesh.h

dolfin/io/NewXMLMeshFunction.cpp

dolfin/io/NewXMLMeshFunction.h

dolfin/io/NewXMLParameterList.cpp

dolfin/io/NewXMLParameterList.h

dolfin/io/NewXMLVector.cpp

dolfin/io/NewXMLVector.h

dolfin/io/OctaveFile.cpp

dolfin/io/OctaveFile.h

dolfin/io/PVTKFile.cpp

dolfin/io/PVTKFile.h

dolfin/io/PythonFile.cpp

dolfin/io/PythonFile.h

dolfin/io/RAWFile.cpp

dolfin/io/RAWFile.h

dolfin/io/VTKFile.cpp

dolfin/io/VTKFile.h

dolfin/io/XMLArray.cpp

dolfin/io/XMLArray.h

dolfin/io/XMLBLASFormData.cpp

dolfin/io/XMLBLASFormData.h

dolfin/io/XMLDolfin.cpp

dolfin/io/XMLDolfin.h

dolfin/io/XMLFile.cpp

dolfin/io/XMLFile.h

dolfin/io/XMLFunctionPlotData.cpp

dolfin/io/XMLFunctionPlotData.h

dolfin/io/XMLGraph.cpp

dolfin/io/XMLGraph.h

dolfin/io/XMLHandler.cpp

dolfin/io/XMLHandler.h

dolfin/io/XMLIndent.cpp

dolfin/io/XMLIndent.h

dolfin/io/XMLLocalMeshData.cpp

dolfin/io/XMLLocalMeshData.h

dolfin/io/XMLMap.cpp

dolfin/io/XMLMap.h

dolfin/io/XMLMatrix.cpp

dolfin/io/XMLMatrix.h

dolfin/io/XMLMesh.cpp

dolfin/io/XMLMesh.h

dolfin/io/XMLMeshData.cpp

dolfin/io/XMLMeshData.h

dolfin/io/XMLMeshFunction.cpp

dolfin/io/XMLMeshFunction.h

dolfin/io/XMLObject.cpp

dolfin/io/XMLObject.h

dolfin/io/XMLParameterList.cpp

dolfin/io/XMLParameterList.h

dolfin/io/XMLVector.cpp

dolfin/io/XMLVector.h

dolfin/io/XMLVectorMapping.cpp

dolfin/io/XMLVectorMapping.h

dolfin/io/XYZFile.cpp

dolfin/io/XYZFile.h

dolfin/io/dolfin_io.h

dolfin/la

dolfin/la/BlockMatrix.cpp

dolfin/la/BlockMatrix.h

dolfin/la/BlockVector.cpp

dolfin/la/BlockVector.h

dolfin/la/CholmodCholeskySolver.cpp

dolfin/la/CholmodCholeskySolver.h

dolfin/la/DefaultFactory.cpp

dolfin/la/DefaultFactory.h

dolfin/la/EpetraFactory.cpp

dolfin/la/EpetraFactory.h

dolfin/la/EpetraKrylovSolver.cpp

dolfin/la/EpetraKrylovSolver.h

dolfin/la/EpetraLUSolver.cpp

dolfin/la/EpetraLUSolver.h

dolfin/la/EpetraMatrix.cpp

dolfin/la/EpetraMatrix.h

dolfin/la/EpetraPreconditioner.cpp

dolfin/la/EpetraPreconditioner.h

dolfin/la/EpetraSparsityPattern.cpp

dolfin/la/EpetraSparsityPattern.h

dolfin/la/EpetraVector.cpp

dolfin/la/EpetraVector.h

dolfin/la/GenericLinearSolver.h

dolfin/la/GenericMatrix.h

dolfin/la/GenericSparsityPattern.h

dolfin/la/GenericTensor.h

dolfin/la/GenericVector.h

dolfin/la/ITLKrylovSolver.cpp

dolfin/la/ITLKrylovSolver.h

dolfin/la/KrylovSolver.h

dolfin/la/LUSolver.h

dolfin/la/LinearAlgebraFactory.h

dolfin/la/LinearSolver.cpp

dolfin/la/LinearSolver.h

dolfin/la/MTL4Factory.cpp

dolfin/la/MTL4Factory.h

dolfin/la/MTL4Matrix.cpp

dolfin/la/MTL4Matrix.h

dolfin/la/MTL4Vector.cpp

dolfin/la/MTL4Vector.h

dolfin/la/Matrix.h

dolfin/la/PETScFactory.cpp

dolfin/la/PETScFactory.h

dolfin/la/PETScKrylovMatrix.cpp

dolfin/la/PETScKrylovMatrix.h

dolfin/la/PETScKrylovSolver.cpp

dolfin/la/PETScKrylovSolver.h

dolfin/la/PETScLUSolver.cpp

dolfin/la/PETScLUSolver.h

dolfin/la/PETScMatrix.cpp

dolfin/la/PETScMatrix.h

dolfin/la/PETScObject.h

dolfin/la/PETScPreconditioner.cpp

dolfin/la/PETScPreconditioner.h

dolfin/la/PETScVector.cpp

dolfin/la/PETScVector.h

dolfin/la/SLEPcEigenSolver.cpp

dolfin/la/SLEPcEigenSolver.h

dolfin/la/STLFactory.cpp

dolfin/la/STLFactory.h

dolfin/la/STLMatrix.cpp

dolfin/la/STLMatrix.h

dolfin/la/Scalar.h

dolfin/la/SingularSolver.cpp

dolfin/la/SingularSolver.h

dolfin/la/SparsityPattern.cpp

dolfin/la/SparsityPattern.h

dolfin/la/UmfpackLUSolver.cpp

dolfin/la/UmfpackLUSolver.h

dolfin/la/Vector.h

dolfin/la/dolfin_la.h

dolfin/la/enums_la.h

dolfin/la/mtl4.h

dolfin/la/solve.cpp

dolfin/la/solve.h

dolfin/la/uBLASDenseMatrix.h

dolfin/la/uBLASDummyPreconditioner.cpp

dolfin/la/uBLASDummyPreconditioner.h

dolfin/la/uBLASFactory.h

dolfin/la/uBLASILUPreconditioner.cpp

dolfin/la/uBLASILUPreconditioner.h

dolfin/la/uBLASKrylovMatrix.cpp

dolfin/la/uBLASKrylovMatrix.h

dolfin/la/uBLASKrylovSolver.cpp

dolfin/la/uBLASKrylovSolver.h

dolfin/la/uBLASMatrix.h

dolfin/la/uBLASPreconditioner.h

dolfin/la/uBLASSparseMatrix.h

dolfin/la/uBLASVector.cpp

dolfin/la/uBLASVector.h

dolfin/la/ublas.h

dolfin/log

dolfin/log/Event.cpp

dolfin/log/Event.h

dolfin/log/LogManager.cpp

dolfin/log/LogManager.h

dolfin/log/LogStream.cpp

dolfin/log/LogStream.h

dolfin/log/Logger.cpp

dolfin/log/Logger.h

dolfin/log/LoggerManager.cpp

dolfin/log/Progress.cpp

dolfin/log/Progress.h

dolfin/log/Table.cpp

dolfin/log/Table.h

dolfin/log/dolfin_log.h

dolfin/log/log.cpp

dolfin/log/log.h

dolfin/main

dolfin/main/MPI.cpp

dolfin/main/MPI.h

dolfin/main/SubSystemsManager.cpp

dolfin/main/SubSystemsManager.h

dolfin/main/dolfin_doc.h

dolfin/main/dolfin_main.h

dolfin/main/init.cpp

dolfin/main/init.h

dolfin/main/mpiutils.h

dolfin/math

dolfin/math/Lagrange.cpp

dolfin/math/Lagrange.h

dolfin/math/Legendre.cpp

dolfin/math/Legendre.h

dolfin/math/basic.cpp

dolfin/math/basic.h

dolfin/math/dolfin_math.h

dolfin/mesh

dolfin/mesh/BoundaryComputation.cpp

dolfin/mesh/BoundaryComputation.h

dolfin/mesh/BoundaryMesh.cpp

dolfin/mesh/BoundaryMesh.h

dolfin/mesh/Box.cpp

dolfin/mesh/Box.h

dolfin/mesh/Cell.cpp

dolfin/mesh/Cell.h

dolfin/mesh/CellType.cpp

dolfin/mesh/CellType.h

dolfin/mesh/DomainBoundary.h

dolfin/mesh/DynamicMeshEditor.cpp

dolfin/mesh/DynamicMeshEditor.h

dolfin/mesh/Edge.cpp

dolfin/mesh/Edge.h

dolfin/mesh/Face.cpp

dolfin/mesh/Face.h

dolfin/mesh/Facet.cpp

dolfin/mesh/Facet.h

dolfin/mesh/GTSInterface.cpp

dolfin/mesh/GTSInterface.h

dolfin/mesh/GeometricPredicates.cpp

dolfin/mesh/GeometricPredicates.h

dolfin/mesh/IntersectionDetector.cpp

dolfin/mesh/IntersectionDetector.h

dolfin/mesh/Interval.cpp

dolfin/mesh/Interval.h

dolfin/mesh/IntervalCell.cpp

dolfin/mesh/IntervalCell.h

dolfin/mesh/LocalMeshCoarsening.cpp

dolfin/mesh/LocalMeshCoarsening.h

dolfin/mesh/LocalMeshData.cpp

dolfin/mesh/LocalMeshData.h

dolfin/mesh/LocalMeshRefinement.cpp

dolfin/mesh/LocalMeshRefinement.h

dolfin/mesh/MPIMeshCommunicator.cpp

dolfin/mesh/MPIMeshCommunicator.h

dolfin/mesh/Mesh.cpp

dolfin/mesh/Mesh.h

dolfin/mesh/MeshConnectivity.cpp

dolfin/mesh/MeshConnectivity.h

dolfin/mesh/MeshData.cpp

dolfin/mesh/MeshData.h

dolfin/mesh/MeshEditor.cpp

dolfin/mesh/MeshEditor.h

dolfin/mesh/MeshEntity.cpp

dolfin/mesh/MeshEntity.h

dolfin/mesh/MeshEntityIterator.cpp

dolfin/mesh/MeshEntityIterator.h

dolfin/mesh/MeshFunction.h

dolfin/mesh/MeshGeometry.cpp

dolfin/mesh/MeshGeometry.h

dolfin/mesh/MeshHierarchy.cpp

dolfin/mesh/MeshHierarchy.h

dolfin/mesh/MeshHierarchyAlgorithms.cpp

dolfin/mesh/MeshHierarchyAlgorithms.h

dolfin/mesh/MeshOrdering.cpp

dolfin/mesh/MeshOrdering.h

dolfin/mesh/MeshPartitioning.cpp

dolfin/mesh/MeshPartitioning.h

dolfin/mesh/MeshSmoothing.cpp

dolfin/mesh/MeshSmoothing.h

dolfin/mesh/MeshTopology.cpp

dolfin/mesh/MeshTopology.h

dolfin/mesh/Point.cpp

dolfin/mesh/Point.h

dolfin/mesh/PointCell.cpp

dolfin/mesh/PointCell.h

dolfin/mesh/Rectangle.cpp

dolfin/mesh/Rectangle.h

dolfin/mesh/RivaraRefinement.cpp

dolfin/mesh/RivaraRefinement.h

dolfin/mesh/SubDomain.cpp

dolfin/mesh/SubDomain.h

dolfin/mesh/SubMesh.cpp

dolfin/mesh/SubMesh.h

dolfin/mesh/TetrahedronCell.cpp

dolfin/mesh/TetrahedronCell.h

dolfin/mesh/TopologyComputation.cpp

dolfin/mesh/TopologyComputation.h

dolfin/mesh/TriangleCell.cpp

dolfin/mesh/TriangleCell.h

dolfin/mesh/UniformMeshRefinement.cpp

dolfin/mesh/UniformMeshRefinement.h

dolfin/mesh/UnitCircle.cpp

dolfin/mesh/UnitCircle.h

dolfin/mesh/UnitCube.cpp

dolfin/mesh/UnitCube.h

dolfin/mesh/UnitInterval.cpp

dolfin/mesh/UnitInterval.h

dolfin/mesh/UnitSphere.cpp

dolfin/mesh/UnitSphere.h

dolfin/mesh/UnitSquare.cpp

dolfin/mesh/UnitSquare.h

dolfin/mesh/Vertex.cpp

dolfin/mesh/Vertex.h

dolfin/mesh/dolfin_mesh.h

dolfin/mesh/predicates_init.h

dolfin/mesh/rounding.h

dolfin/mf

dolfin/mf/ConvectionMatrix.h

dolfin/mf/LoadVector.h

dolfin/mf/MassMatrix.h

dolfin/mf/MatrixFactory.cpp

dolfin/mf/MatrixFactory.h

dolfin/mf/StiffnessMatrix.h

dolfin/mf/dolfin_mf.h

dolfin/mf/ffc-forms

dolfin/mf/ffc-forms/ConvectionMatrix2D.form

dolfin/mf/ffc-forms/ConvectionMatrix2D.h

dolfin/mf/ffc-forms/ConvectionMatrix3D.form

dolfin/mf/ffc-forms/ConvectionMatrix3D.h

dolfin/mf/ffc-forms/LoadVector2D.form

dolfin/mf/ffc-forms/LoadVector2D.h

dolfin/mf/ffc-forms/LoadVector3D.form

dolfin/mf/ffc-forms/LoadVector3D.h

dolfin/mf/ffc-forms/MassMatrix2D.form

dolfin/mf/ffc-forms/MassMatrix2D.h

dolfin/mf/ffc-forms/MassMatrix3D.form

dolfin/mf/ffc-forms/MassMatrix3D.h

dolfin/mf/ffc-forms/StiffnessMatrix2D.form

dolfin/mf/ffc-forms/StiffnessMatrix2D.h

dolfin/mf/ffc-forms/StiffnessMatrix3D.form

dolfin/mf/ffc-forms/StiffnessMatrix3D.h

dolfin/nls

dolfin/nls/NewtonSolver.cpp

dolfin/nls/NewtonSolver.h

dolfin/nls/NonlinearProblem.h

dolfin/nls/dolfin_nls.h

dolfin/ode

dolfin/ode/Adaptivity.cpp

dolfin/ode/Adaptivity.h

dolfin/ode/Alloc.cpp

dolfin/ode/Alloc.h

dolfin/ode/ComplexODE.cpp

dolfin/ode/ComplexODE.h

dolfin/ode/Controller.cpp

dolfin/ode/Controller.h

dolfin/ode/Dependencies.cpp

dolfin/ode/Dependencies.h

dolfin/ode/Dual.cpp

dolfin/ode/Dual.h

dolfin/ode/GMPObject.h

dolfin/ode/Method.cpp

dolfin/ode/Method.h

dolfin/ode/MonoAdaptiveFixedPointSolver.cpp

dolfin/ode/MonoAdaptiveFixedPointSolver.h

dolfin/ode/MonoAdaptiveJacobian.cpp

dolfin/ode/MonoAdaptiveJacobian.h

dolfin/ode/MonoAdaptiveNewtonSolver.cpp

dolfin/ode/MonoAdaptiveNewtonSolver.h

dolfin/ode/MonoAdaptiveTimeSlab.cpp

dolfin/ode/MonoAdaptiveTimeSlab.h

dolfin/ode/MonoAdaptivity.cpp

dolfin/ode/MonoAdaptivity.h

dolfin/ode/MultiAdaptiveFixedPointSolver.cpp

dolfin/ode/MultiAdaptiveFixedPointSolver.h

dolfin/ode/MultiAdaptiveJacobian.cpp

dolfin/ode/MultiAdaptiveJacobian.h

dolfin/ode/MultiAdaptiveNewtonSolver.cpp

dolfin/ode/MultiAdaptiveNewtonSolver.h

dolfin/ode/MultiAdaptivePreconditioner.cpp

dolfin/ode/MultiAdaptivePreconditioner.h

dolfin/ode/MultiAdaptiveTimeSlab.cpp

dolfin/ode/MultiAdaptiveTimeSlab.h

dolfin/ode/MultiAdaptivity.cpp

dolfin/ode/MultiAdaptivity.h

dolfin/ode/ODE.cpp

dolfin/ode/ODE.h

dolfin/ode/ODECollection.cpp

dolfin/ode/ODECollection.h

dolfin/ode/ODESolution.cpp

dolfin/ode/ODESolution.h

dolfin/ode/ODESolver.cpp

dolfin/ode/ODESolver.h

dolfin/ode/Partition.cpp

dolfin/ode/Partition.h

dolfin/ode/README

dolfin/ode/SORSolver.cpp

dolfin/ode/SORSolver.h

dolfin/ode/Sample.cpp

dolfin/ode/Sample.h

dolfin/ode/TimeSlab.cpp

dolfin/ode/TimeSlab.h

dolfin/ode/TimeSlabJacobian.cpp

dolfin/ode/TimeSlabJacobian.h

dolfin/ode/TimeSlabSolver.cpp

dolfin/ode/TimeSlabSolver.h

dolfin/ode/TimeStepper.cpp

dolfin/ode/TimeStepper.h

dolfin/ode/UpdatedMultiAdaptiveJacobian.cpp

dolfin/ode/UpdatedMultiAdaptiveJacobian.h

dolfin/ode/cGqMethod.cpp

dolfin/ode/cGqMethod.h

dolfin/ode/dGqMethod.cpp

dolfin/ode/dGqMethod.h

dolfin/ode/dolfin_ode.h

dolfin/parameter

dolfin/parameter/DefaultParameters.h

dolfin/parameter/Parameter.cpp

dolfin/parameter/Parameter.h

dolfin/parameter/ParameterList.cpp

dolfin/parameter/ParameterList.h

dolfin/parameter/ParameterSystem.cpp

dolfin/parameter/ParameterSystem.h

dolfin/parameter/ParameterValue.cpp

dolfin/parameter/ParameterValue.h

dolfin/parameter/Parametrized.cpp

dolfin/parameter/Parametrized.h

dolfin/parameter/dolfin_parameter.h

dolfin/parameter/parameters.cpp

dolfin/parameter/parameters.h

dolfin/plot

dolfin/plot/FunctionPlotData.cpp

dolfin/plot/FunctionPlotData.h

dolfin/plot/dolfin_plot.h

dolfin/plot/plot.cpp

dolfin/plot/plot.h

dolfin/quadrature

dolfin/quadrature/GaussQuadrature.cpp

dolfin/quadrature/GaussQuadrature.h

dolfin/quadrature/GaussianQuadrature.cpp

dolfin/quadrature/GaussianQuadrature.h

dolfin/quadrature/LobattoQuadrature.cpp

dolfin/quadrature/LobattoQuadrature.h

dolfin/quadrature/Quadrature.cpp

dolfin/quadrature/Quadrature.h

dolfin/quadrature/RadauQuadrature.cpp

dolfin/quadrature/RadauQuadrature.h

dolfin/quadrature/dolfin_quadrature.h

dolfin/scons.cfg

dolfin/swig

dolfin/swig/README

dolfin/swig/directors.i

dolfin/swig/dolfin.i

dolfin/swig/dolfin_common_post.i

dolfin/swig/dolfin_docstrings.i

dolfin/swig/dolfin_exceptions.i

dolfin/swig/dolfin_function_post.i

dolfin/swig/dolfin_function_pre.i

dolfin/swig/dolfin_headers.i

dolfin/swig/dolfin_la_post.i

dolfin/swig/dolfin_la_pre.i

dolfin/swig/dolfin_log_post.i

dolfin/swig/dolfin_mesh_post.i

dolfin/swig/dolfin_mesh_pre.i

dolfin/swig/dolfin_pde_pre.i

dolfin/swig/dolfin_shared_ptr_classes.i

dolfin/swig/dolfin_swig_version.i

dolfin/swig/generate.py

dolfin/swig/generate_docstrings.py

dolfin/swig/ignores.i

dolfin/swig/numpy_typemaps.i

dolfin/swig/renames.i

dolfin/swig/typemaps.i

misc

misc/gendoc.sh

misc/greeting

misc/greeting/greeting.sh

misc/petsc.conf

misc/slepc.conf

misc/utils

misc/utils/convert

misc/utils/convert/dolfin-convert

misc/utils/convert/test_diffpack.grid

misc/utils/convert/test_exodus.exo

misc/utils/convert/test_gmsh.msh

misc/utils/convert/test_old_xml.xml

misc/utils/convert/test_tetgen.mesh

misc/utils/emacs

misc/utils/emacs/macros

misc/utils/gid

misc/utils/gid/dolfin.bas

misc/utils/inp2dx

misc/utils/inp2dx/inp2dx.c

misc/utils/inp2dx/inp2dxanim.c

misc/utils/matlab

misc/utils/matlab/meshindex.m

misc/utils/matlab/plotcontroller.m

misc/utils/matlab/plotslab.m

misc/utils/matlab/writegid.m

misc/utils/matlab/writeinp.m

misc/utils/matlab/xmlmatrix.m

misc/utils/matlab/xmlmesh.m

misc/utils/matlab/xmlvector.m

misc/utils/octave

misc/utils/octave/README

misc/utils/octave/pdemesh.m

misc/utils/octave/pdeplot.m

misc/utils/octave/pdesurf.m

misc/utils/opendx

misc/utils/opendx/dolfin.cfg

misc/utils/opendx/dolfin.net

misc/utils/order

misc/utils/order/dolfin-order

misc/utils/order/mesh0.xml

misc/utils/order/mesh1.xml

misc/utils/python

misc/utils/python/README

misc/utils/python/extract2d

misc/utils/swig

misc/utils/swig/dolfin-swig

misc/utils/system

misc/utils/system/monitor

misc/utils/vim

misc/utils/vim/macros

misc/utils/xml

misc/utils/xml/convertall

misc/utils/xml/inp2xml

sandbox

sandbox/README

sandbox/electromagnetics

sandbox/electromagnetics/tests

sandbox/electromagnetics/tests/test_function_eval.py

sandbox/graph

sandbox/graph/main.cpp

sandbox/ilmarw

sandbox/ilmarw/AssemblyFactory.cpp

sandbox/ilmarw/AssemblyFactory.h

sandbox/ilmarw/assembler_bench

sandbox/ilmarw/assembler_bench/Elasticity_3D

sandbox/ilmarw/assembler_bench/Elasticity_3D/#main.cpp#

sandbox/ilmarw/assembler_bench/Elasticity_3D/Elasticity.form

sandbox/ilmarw/assembler_bench/Elasticity_3D/Elasticity.h

sandbox/ilmarw/assembler_bench/Elasticity_3D/Elasticity.py

sandbox/ilmarw/assembler_bench/Elasticity_3D/SConscript

sandbox/ilmarw/assembler_bench/Elasticity_3D/main.cpp

sandbox/ilmarw/assembler_bench/ICNS_3D_Momentum

sandbox/ilmarw/assembler_bench/ICNS_3D_Momentum/NSEMomentum3D.form

sandbox/ilmarw/assembler_bench/ICNS_3D_Momentum/NSEMomentum3D.h

sandbox/ilmarw/assembler_bench/ICNS_3D_Momentum/NSEMomentum3D.py

sandbox/ilmarw/assembler_bench/ICNS_3D_Momentum/SConscript

sandbox/ilmarw/assembler_bench/ICNS_3D_Momentum/main.cpp

sandbox/ilmarw/assembler_bench/Laplace_2D

sandbox/ilmarw/assembler_bench/Laplace_2D/PoissonP1.form

sandbox/ilmarw/assembler_bench/Laplace_2D/PoissonP1.h

sandbox/ilmarw/assembler_bench/Laplace_2D/PoissonP1.py

sandbox/ilmarw/assembler_bench/Laplace_2D/PoissonP2.form

sandbox/ilmarw/assembler_bench/Laplace_2D/PoissonP2.h

sandbox/ilmarw/assembler_bench/Laplace_2D/PoissonP2.py

sandbox/ilmarw/assembler_bench/Laplace_2D/PoissonP3.form

sandbox/ilmarw/assembler_bench/Laplace_2D/PoissonP3.h

sandbox/ilmarw/assembler_bench/Laplace_2D/PoissonP3.py

sandbox/ilmarw/assembler_bench/Laplace_2D/SConscript

sandbox/ilmarw/assembler_bench/Laplace_2D/main.cpp

sandbox/ilmarw/assembler_bench/SConstruct

sandbox/ilmarw/assembler_bench/Stokes_2D_Stab

sandbox/ilmarw/assembler_bench/Stokes_2D_Stab/SConscript

sandbox/ilmarw/assembler_bench/Stokes_2D_Stab/Stokes.form

sandbox/ilmarw/assembler_bench/Stokes_2D_Stab/Stokes.h

sandbox/ilmarw/assembler_bench/Stokes_2D_Stab/Stokes.py

sandbox/ilmarw/assembler_bench/Stokes_2D_Stab/main.cpp

sandbox/ilmarw/assembler_bench/Stokes_2D_TH

sandbox/ilmarw/assembler_bench/Stokes_2D_TH/SConscript

sandbox/ilmarw/assembler_bench/Stokes_2D_TH/Stokes.form

sandbox/ilmarw/assembler_bench/Stokes_2D_TH/Stokes.h

sandbox/ilmarw/assembler_bench/Stokes_2D_TH/Stokes.py

sandbox/ilmarw/assembler_bench/Stokes_2D_TH/main.cpp

sandbox/ilmarw/assembler_bench/assembly_tester.cpp

sandbox/ilmarw/assembler_bench/assembly_tester.h

sandbox/ilmarw/assembler_bench/run_tests.py

sandbox/ilmarw/test

sandbox/ilmarw/test/Poisson.form

sandbox/ilmarw/test/Poisson.h

sandbox/ilmarw/test/Poisson.py

sandbox/ilmarw/test/Poisson.pyc

sandbox/ilmarw/test/SConstruct

sandbox/ilmarw/test/main.cpp

sandbox/jit

sandbox/jit/test.py

sandbox/la

sandbox/la/convection-diffusion

sandbox/la/convection-diffusion/conv-diff.py

sandbox/la/hypre

sandbox/la/hypre/Poisson.form

sandbox/la/hypre/Poisson.h

sandbox/la/hypre/SConstruct

sandbox/la/hypre/main.cpp

sandbox/la/neumann

sandbox/la/neumann/demo.py

sandbox/la/poisson

sandbox/la/poisson/BlockLinearAlgebra.py

sandbox/la/poisson/Krylov.py

sandbox/la/poisson/poisson.py

sandbox/la/solve

sandbox/la/solve/Poisson.form

sandbox/la/solve/Poisson.h

sandbox/la/solve/SConstruct

sandbox/la/solve/main.cpp

sandbox/la/sparsity_pattern

sandbox/la/sparsity_pattern/test.py

sandbox/la/test

sandbox/la/test/demo.m

sandbox/la/test/demo.py

sandbox/la/trilinos

sandbox/la/trilinos/MinRes.py

sandbox/la/trilinos/demo2.py

sandbox/la/trilinos/demo3.py

sandbox/la/trilinos/demo5.py

sandbox/la/trilinos/demo6.py

sandbox/meshordering

sandbox/meshordering/main.cpp

sandbox/meshordering/meshreordering

sandbox/meshordering/test.form

sandbox/misc

sandbox/misc/README

sandbox/misc/cpp

sandbox/misc/cpp/Poisson.form

sandbox/misc/cpp/Poisson.h

sandbox/misc/cpp/SConstruct

sandbox/misc/cpp/main.cpp

sandbox/misc/python

sandbox/misc/python/test.py

sandbox/mtl4

sandbox/mtl4/DirectAssembler.h

sandbox/mtl4/MTL_Matrix.h

sandbox/mtl4/MTL_Vector.h

sandbox/mtl4/README

sandbox/mtl4/krylov_bench

sandbox/mtl4/krylov_bench/itl_solver.cpp

sandbox/mtl4/mat_vec_mult_bench

sandbox/mtl4/mat_vec_mult_bench/NSEMomentum3D.form

sandbox/mtl4/mat_vec_mult_bench/NSEMomentum3D.h

sandbox/mtl4/mat_vec_mult_bench/SConstruct

sandbox/mtl4/mat_vec_mult_bench/main.cpp

sandbox/mtl4/nse_bench

sandbox/mtl4/nse_bench/NSEMomentum3D.form

sandbox/mtl4/nse_bench/NSEMomentum3D.h

sandbox/mtl4/nse_bench/SConstruct

sandbox/mtl4/nse_bench/main.cpp

sandbox/mtl4/op

sandbox/mtl4/op/Poisson.form

sandbox/mtl4/op/Poisson.h

sandbox/mtl4/op/SConstruct

sandbox/mtl4/op/mat.cpp

sandbox/mtl4/op/vec.cpp

sandbox/mtl4/poisson_bench

sandbox/mtl4/poisson_bench/Poisson.form

sandbox/mtl4/poisson_bench/Poisson.h

sandbox/mtl4/poisson_bench/SConstruct

sandbox/mtl4/poisson_bench/main.cpp

sandbox/mtl4/poisson_solve

sandbox/mtl4/poisson_solve/Poisson.form

sandbox/mtl4/poisson_solve/Poisson.h

sandbox/mtl4/poisson_solve/SConstruct

sandbox/mtl4/poisson_solve/main.cpp

sandbox/nonmatching

sandbox/nonmatching/SConstruct

sandbox/nonmatching/Simple.form

sandbox/nonmatching/Simple.h

sandbox/nonmatching/main.cpp

sandbox/partitioning

sandbox/partitioning/SConstruct

sandbox/partitioning/bench1.sh

sandbox/partitioning/bench2.sh

sandbox/partitioning/bench3.sh

sandbox/partitioning/main.cpp

sandbox/partitioning/partition.h

sandbox/partitioning/plot.py

sandbox/partitioning/plot1a.sh

sandbox/partitioning/plot1b.sh

sandbox/partitioning/plot2a.sh

sandbox/partitioning/plot2b.sh

sandbox/partitioning/plot3a.sh

sandbox/partitioning/plot3b.sh

sandbox/partitioning/unitcube4.xml

sandbox/partitioning/unitsquare40.xml

sandbox/passembly

sandbox/passembly-old

sandbox/passembly-old/PdofMap.h

sandbox/passembly-old/Poisson2D.form

sandbox/passembly-old/Poisson2D.h

sandbox/passembly-old/main.cpp

sandbox/passembly-old/partition.h

sandbox/passembly/SConstruct

sandbox/passembly/main.cpp

sandbox/passembly/plot_partitions

sandbox/passembly/unitsquare.xml.gz

sandbox/ufl

sandbox/ufl/elasticity

sandbox/ufl/elasticity/Elasticity.form

sandbox/ufl/elasticity/ElasticityUFL.ufl

sandbox/ufl/elasticity/SConstruct

sandbox/ufl/elasticity/main.cpp

sandbox/ufl/poisson

sandbox/ufl/poisson/Poisson.ufl

sandbox/ufl/poisson/SConstruct

sandbox/ufl/poisson/main.cpp

sandbox/xml

sandbox/xml/SConstruct

sandbox/xml/dolfin_plot_data.xml

sandbox/xml/int_array_map.xml

sandbox/xml/main.cpp

scons

scons.local

scons/simula-scons

scons/simula-scons/AUTHORS

scons/simula-scons/LICENSE

scons/simula-scons/README

scons/simula-scons/TODO

scons/simula-scons/setup.py

scons/simula-scons/simula_scons

scons/simula-scons/simula_scons/Customize.py

scons/simula-scons/simula_scons/Errors.py

scons/simula-scons/simula_scons/ExtendedEnvironment.py

scons/simula-scons/simula_scons/__init__.py

scons/simula-scons/simula_scons/_module.py

scons/simula-scons/simula_scons/latex.py

scons/simula-scons/simula_scons/pkgconfig.py

scons/simula-scons/simula_scons/pkgconfiggenerators

scons/simula-scons/simula_scons/pkgconfiggenerators/__init__.py

scons/simula-scons/simula_scons/pkgconfiggenerators/boost.py

scons/simula-scons/simula_scons/pkgconfiggenerators/cholmod.py

scons/simula-scons/simula_scons/pkgconfiggenerators/commonPkgConfigUtils.py

scons/simula-scons/simula_scons/pkgconfiggenerators/dolfin.py

scons/simula-scons/simula_scons/pkgconfiggenerators/gmp.py

scons/simula-scons/simula_scons/pkgconfiggenerators/hypre.py

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/boost

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/boost/install.sh

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/cmake

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/cmake/install.sh

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/dolfin

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/dolfin/install.sh

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/hypre

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/hypre/hypre-configure

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/hypre/hypre-struct_overlap_innerprod.c

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/hypre/install.sh

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/pkgconfig

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/pkgconfig/install.sh

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/scotch

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/scotch/install.sh

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/trilinos

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/trilinos/install.sh

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/ufc

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/ufc/install.sh

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/vtk

scons/simula-scons/simula_scons/pkgconfiggenerators/install_packages/vtk/install.sh

scons/simula-scons/simula_scons/pkgconfiggenerators/libxml.py

scons/simula-scons/simula_scons/pkgconfiggenerators/mtl4.py

scons/simula-scons/simula_scons/pkgconfiggenerators/numeric.py

scons/simula-scons/simula_scons/pkgconfiggenerators/numpy.py

scons/simula-scons/simula_scons/pkgconfiggenerators/parmetis.py

scons/simula-scons/simula_scons/pkgconfiggenerators/petsc.py

scons/simula-scons/simula_scons/pkgconfiggenerators/python.py

scons/simula-scons/simula_scons/pkgconfiggenerators/scotch.py

scons/simula-scons/simula_scons/pkgconfiggenerators/slepc.py

scons/simula-scons/simula_scons/pkgconfiggenerators/superlu.py

scons/simula-scons/simula_scons/pkgconfiggenerators/trilinos.py

scons/simula-scons/simula_scons/pkgconfiggenerators/umfpack.py

scripts

scripts/broken

scripts/compileforms

scripts/dolfinreplace

scripts/fixme

scripts/klocs

scripts/makedist

scripts/makedoc

scripts/notinuse

site-packages

site-packages/dolfin

site-packages/dolfin/__init__.py

site-packages/dolfin/assemble.py

site-packages/dolfin/boundary_subdomain_finder.py

site-packages/dolfin/compile_function.py

site-packages/dolfin/compile_functions.py

site-packages/dolfin/compile_subdomains.py

site-packages/dolfin/constant.py

site-packages/dolfin/constants.py

site-packages/dolfin/dolfin_time.py

site-packages/dolfin/dynamic_load_mpi.py

site-packages/dolfin/errornorm.py

site-packages/dolfin/form.py

site-packages/dolfin/function.py

site-packages/dolfin/functionspace.py

site-packages/dolfin/interpolate.py

site-packages/dolfin/jit.py

site-packages/dolfin/logger.py

site-packages/dolfin/meshconvert.py

site-packages/dolfin/norm.py

site-packages/dolfin/plot.py

site-packages/dolfin/project.py

site-packages/dolfin/specialfunctions.py

site-packages/dolfin/ufl

site-packages/dolfin/ufl/__init__.py

site-packages/dolfin/ufl/assemble.py

site-packages/dolfin/ufl/compile_function.py

site-packages/dolfin/ufl/constant.py

site-packages/dolfin/ufl/constants.py

site-packages/dolfin/ufl/cpp.py

site-packages/dolfin/ufl/errornorm.py

site-packages/dolfin/ufl/form.py

site-packages/dolfin/ufl/function.py

site-packages/dolfin/ufl/functionspace.py

site-packages/dolfin/ufl/interpolate.py

site-packages/dolfin/ufl/jit.py

site-packages/dolfin/ufl/meshconvert.py

site-packages/dolfin/ufl/norm.py

site-packages/dolfin/ufl/project.py

site-packages/dolfin/ufl/specialfunctions.py

site-packages/dolfin/ufl/ufc_functionspace.py

site-packages/dolfin/ufl/variationalproblem.py

site-packages/dolfin/utils.py

site-packages/dolfin/variationalproblem.py

site-packages/dolfin_utils

site-packages/dolfin_utils/__init__.py

site-packages/dolfin_utils/pjobs

site-packages/dolfin_utils/pjobs/__init__.py

site-packages/dolfin_utils/pjobs/pjobs.py

site-packages/dolfin_utils/wrappers

site-packages/dolfin_utils/wrappers/__init__.py

site-packages/dolfin_utils/wrappers/coefficient.py

site-packages/dolfin_utils/wrappers/coefficient_set.py

site-packages/dolfin_utils/wrappers/form.py

site-packages/dolfin_utils/wrappers/functionspace.py

site-packages/dolfin_utils/wrappers/wrappers.py

test

test/SConscript

test/memory

test/memory/dolfin_mpi.supp

test/memory/test.py

test/system

test/system/test.py

test/test.py

test/unit

test/unit/function

test/unit/function/cpp

test/unit/function/cpp/Projection.form

test/unit/function/cpp/Projection.h

test/unit/function/cpp/test.cpp

test/unit/function/python

test/unit/function/python/test.py

test/unit/graph

test/unit/graph/cpp

test/unit/graph/cpp/test.cpp

test/unit/graph/python

test/unit/graph/python/test.py

test/unit/io

test/unit/io/cpp

test/unit/io/cpp/test.cpp

test/unit/io/python

test/unit/io/python/test.py

test/unit/la

test/unit/la/cpp

test/unit/la/cpp/test.cpp

test/unit/la/python

test/unit/la/python/test.py

test/unit/mesh

test/unit/mesh/cpp

test/unit/mesh/cpp/test.cpp

test/unit/mesh/python

test/unit/mesh/python/test.py

test/unit/meshconvert

test/unit/meshconvert/cpp

test/unit/meshconvert/cpp/test

test/unit/meshconvert/python

test/unit/meshconvert/python/data

test/unit/meshconvert/python/data/abaqus.inp

test/unit/meshconvert/python/test.py

test/unit/restriction

test/unit/restriction/python

test/unit/restriction/python/test.py

test/unit/test.py

Show diffs side-by-side

added added

removed removed

bench/ode/reaction/bench-tol.py

#!/usr/bin/env python

# Licensed under the GNU LGPL Version 2.1.

# Run benchmarks for varying tolerance

from os import system

from shutil import copy, move

from benchutil import *

# Log file

logfile = "bench-tol.log"

# Parameter set for benchmarks

tols = [1e-4, 5e-5, 1e-5, 5e-6, 1e-6, 5e-7, 1e-7, 5e-8]

sizes = [1000]

# Write version and date to log file

system("pkg-config --modversion dolfin >> " + logfile)

system("date +'%Y-%m-%d %H:%M:%S' >> " + logfile)

system("uname -snm >> " + logfile)

file = open(logfile, "a")

file.write("\n");

# Run sets of benchmarks

run_set("cg", "fixed-point", tols, sizes, logfile)

run_set("mcg", "fixed-point", tols, sizes, logfile)

#run_set("cg", "newton", tols, sizes, logfile)

#run_set("mcg", "newton", tols, sizes, logfile)

file.write("\n");

file.write("---------------------------------------------------------------------------------------\n")

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