« back to all changes in this revision
Viewing changes to tests/lmer-1.Rout.save
- browse files at revision 28
- compare with another revision
- download diff
- download tarball
- view history from revision 28
- Committer: Bazaar Package Importer
- Author(s): Dirk Eddelbuettel
- Date: 2010-11-11 11:00:44 UTC
- mfrom: (1.1.23 upstream) (2.2.9 sid)
- Revision ID: james.westby@ubuntu.com-20101111110044-dt302242aebr14fm
Tags: 0.999375-37-1
New upstream release
added
removed
tests/lmer-1.Rout.save
1
1
2
R version 2.12.0 Patched (2010-10-19 r53372)
2
R version 2.12.0 (2010-10-15)
3
3
Copyright (C) 2010 The R Foundation for Statistical Computing
4
4
ISBN 3-900051-07-0
5
Platform: i686-pc-linux-gnu (32-bit)
5
Platform: x86_64-pc-linux-gnu (64-bit)
6
6
7
7
R is free software and comes with ABSOLUTELY NO WARRANTY.
8
8
You are welcome to redistribute it under certain conditions.
28
28
1756 1775 -871.8 1752 1744
29
29
Random effects:
30
30
Groups Name Variance Std.Dev. Corr
31
Subject (Intercept) 612.092 24.7405
31
Subject (Intercept) 612.090 24.7405
32
32
Days 35.072 5.9221 0.066
33
33
Residual 654.941 25.5918
34
34
Number of obs: 180, groups: Subject, 18
153
153
5 1.4381076
154
154
6 -1.7594785
155
155
7 -0.2546842
156
8 0.6977648
156
8 0.6977649
157
157
9 1.2121675
158
10 4.9434830
158
10 4.9434829
159
159
160
160
> (sf1 <- summary(fit.1)) # show() is as without summary()
161
161
Linear mixed model fit by REML
446
446
101.5 107.5 -44.77 87.59 89.54
447
447
Random effects:
448
448
Groups Name Variance Std.Dev. Corr
449
group (Intercept) 140.641521 11.85924
449
group (Intercept) 140.646168 11.85943
450
450
x 0.014427 0.12011 -1.000
451
Residual 2.722977 1.65014
451
Residual 2.722972 1.65014
452
452
Number of obs: 20, groups: group, 2
453
453
454
454
Fixed effects:
455
455
Estimate Std. Error t value
456
(Intercept) 15.23544 8.40776 1.812
456
(Intercept) 15.23553 8.40752 1.812
457
457
x 0.18559 0.08508 2.181
458
458
459
459
Correlation of Fixed Effects:
471
471
[1] 0 4
472
472
473
473
Slot "ST":
474
[,1]
475
[1,] 7.18678678
476
[2,] 0.00000000
477
[3,] -0.01012811
474
[,1]
475
[1,] 7.186912e+00
476
[2,] 5.962606e-08
477
[3,] -1.012811e-02
478
478
479
479
Slot "call":
480
480
lmer(formula = y ~ x + (x | group))
481
481
482
482
Slot "deviance":
483
[1] 87.58735
483
[1] 87.58728
484
484
485
485
Slot "dims":
486
486
nt n p q s np LMM REML fTyp lTyp vTyp nest useSc
490
490
491
491
Slot "fixef":
492
492
[,1]
493
(Intercept) 15.2354383
494
x 0.1855865
493
(Intercept) 15.2355284
494
x 0.1855855
495
495
496
496
Slot "nc":
497
497
[1] 2
498
498
499
499
Slot "ranef":
500
[,1]
501
[1,] -8.350427
502
[2,] 8.350427
503
[3,] 0.084574
504
[4,] -0.084574
500
[,1]
501
[1,] -8.35085457
502
[2,] 8.35085457
503
[3,] 0.08457838
504
[4,] -0.08457838
505
505
506
506
Slot "sigma":
507
507
[,1]
508
[1,] 1.650145
508
[1,] 1.650143
509
509
510
510
>
511
511
> if (FALSE) { # mcmcsamp for glmer not yet available
632
632
m0 3 1034.17 1044.61 -514.08
633
633
m1 4 585.49 599.41 -288.75 450.67 1 < 2.2e-16
634
634
>
635
> ## Check that quasi families throw an error
636
> try(gm1 <- lmer(cbind(incidence, size - incidence) ~ period + (1|herd),
637
+ data = cbpp, family = quasibinomial))
638
Error in glmer(formula = cbind(incidence, size - incidence) ~ period + :
639
"quasi" families cannot be used in glmer
640
> try(gm1 <- lmer(incidence ~ period + (1|herd),
641
+ data = cbpp, family = quasipoisson))
642
Error in glmer(formula = incidence ~ period + (1 | herd), data = cbpp, :
643
"quasi" families cannot be used in glmer
644
> try(gm1 <- lmer(incidence ~ period + (1|herd),
645
+ data = cbpp, family = quasi))
646
Error in glmer(formula = incidence ~ period + (1 | herd), data = cbpp, :
647
"quasi" families cannot be used in glmer
648
>
635
649
> if(.unsafe.BLAS) rm(identical)
636
650
>
637
651
> cat('Time elapsed: ', proc.time(),'\n') # for ``statistical reasons''
638
Time elapsed: 6.609 0.185 7.371 0 0
652
Time elapsed: 9.55 0.08 9.636 0 0
639
653
>
Loggerhead is a web-based interface for Breezy
Version: 2.0.1