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  • Committer: Bazaar Package Importer
  • Author(s): Aaron M. Ucko
  • Date: 2002-04-04 22:13:09 UTC
  • Revision ID: james.westby@ubuntu.com-20020404221309-vfze028rfnlrldct
Tags: upstream-6.1.20011220a
Import upstream version 6.1.20011220a

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Lines of Context:
demo/delta.prt
 
1
Seq-entry ::= set {
 
2
  level 1 ,
 
3
  class nuc-prot ,
 
4
  date
 
5
    str "15-DEC-1989" ,
 
6
  descr {
 
7
    title "A.variabilis nifD gene 5' recombination site. and translated
 
8
 products" ,
 
9
    org {
 
10
      taxname "Anabaena variabilis" } } ,
 
11
  seq-set {
 
12
    set {
 
13
      level 2 ,
 
14
      class segset ,
 
15
      descr {
 
16
        title "A.variabilis nifD gene 5' recombination site." } ,
 
17
      seq-set {
 
18
        seq {
 
19
          id {
 
20
            giim {
 
21
              id 86659 } } ,
 
22
          descr {
 
23
            title "A.variabilis nifD gene 5' recombination site." } ,
 
24
          inst {
 
25
            repr delta ,
 
26
            mol dna ,
 
27
            length 502 ,
 
28
            ext
 
29
              delta {
 
30
                          loc
 
31
                whole
 
32
                  giim {
 
33
                    id 86657 } ,
 
34
              literal { length 5, seq-data iupacna "GGGGG" },
 
35
                          loc
 
36
                whole
 
37
                  giim {
 
38
                    id 86658 } } } } ,
 
39
        set {
 
40
          level 3 ,
 
41
          class parts ,
 
42
          seq-set {
 
43
            seq {
 
44
              id {
 
45
                giim {
 
46
                  id 86657 } ,
 
47
                genbank {
 
48
                  name "ANANIFDR1" ,
 
49
                  accession "M28152" } } ,
 
50
              descr {
 
51
                title "A.variabilis nifD gene 5' recombination site." ,
 
52
                genbank {
 
53
                  source "Anabaena variabilis (strain ATCC 29413) vegetative
 
54
 cell DNA, cosmid 33D12." ,
 
55
                  keywords {
 
56
                    "nifD gene" ,
 
57
                    "nitrogenase" } } } ,
 
58
              inst {
 
59
                repr raw ,
 
60
                mol dna ,
 
61
                length 204 ,
 
62
                topology linear ,
 
63
                strand ds ,
 
64
                seq-data
 
65
                  ncbi2na '36306514D3F38E1BC597183F822F6C0270825E3F0D9F7ACF022
 
66
0B3B7D4023A77D5F5B40E477EA3C75817263AAE40ED2348C2BF41'H } ,
 
67
              annot {
 
68
                {
 
69
                  data
 
70
                    ftable {
 
71
                      {
 
72
                        data
 
73
                          imp {
 
74
                            key "misc_recomb" } ,
 
75
                        location
 
76
                          int {
 
77
                            from 152 ,
 
78
                            to 162 ,
 
79
                            id
 
80
                              giim {
 
81
                                id 86657 } ,
 
82
                            fuzz-to
 
83
                              lim tl } ,
 
84
                        qual {
 
85
                          {
 
86
                            qual "note" ,
 
87
                            val "nifD recombination site" } } } ,
 
88
                      {
 
89
                        data
 
90
                          pub {
 
91
                            pub {
 
92
                              gen {
 
93
                                cit "Journal=""Unpublished (1989) Dept. of
 
94
 Bio., TA&M, College Station, TX 77843""," ,
 
95
                                authors {
 
96
                                  names
 
97
                                    str {
 
98
                                      "Brusca,J.S." } } } } } ,
 
99
                        location
 
100
                          int {
 
101
                            from 183 ,
 
102
                            to 203 ,
 
103
                                                        id
 
104
                                                                giim {
 
105
                                                                        id 86657} } } ,
 
106
                      {
 
107
                        data
 
108
                          pub {
 
109
                            pub {
 
110
                              muid 89327123 ,
 
111
                              article {
 
112
                                title {
 
113
                                  name "Excision of an 11-kilobase-pair DNA
 
114
 element from within the nifD gene in Anabaena variabilis heterocysts" } ,
 
115
                                authors {
 
116
                                  names
 
117
                                    str {
 
118
                                      "Brusca,J.S." ,
 
119
                                      "Hale,M.A." ,
 
120
                                      "Carrasco,C.D." ,
 
121
                                      "Golden,J.W." } } ,
 
122
                                from
 
123
                                  journal {
 
124
                                    title {
 
125
                                      name "J. Bacteriol." } ,
 
126
                                    imp {
 
127
                                      date
 
128
                                        std {
 
129
                                          year 1989 } ,
 
130
                                      volume "171" ,
 
131
                                      pages "4138-4145" } } } } } ,
 
132
                        location
 
133
                          int {
 
134
                            from 133 ,
 
135
                            to 182 ,
 
136
                                                        id
 
137
                                                                giim {
 
138
                                                                        id 86657}} } } } } } ,
 
139
            seq {
 
140
              id {
 
141
                giim {
 
142
                  id 86658 } ,
 
143
                genbank {
 
144
                  name "ANANIFDR2" ,
 
145
                  accession "M28153" } } ,
 
146
              descr {
 
147
                title "A.variabilis nifD gene 3' recombination site, and xisA
 
148
 gene, 5' end." ,
 
149
                genbank {
 
150
                  source "Anabaena variabilis (strain ATCC 29413) vegetative
 
151
 cell DNA, cosmid 33D12." ,
 
152
                  keywords {
 
153
                    "nifD gene" ,
 
154
                    "nitrogenase" ,
 
155
                    "xisA gene" } ,
 
156
                  origin "About 10.7 kb after segment 1." } } ,
 
157
              inst {
 
158
                repr raw ,
 
159
                mol dna ,
 
160
                length 293 ,
 
161
                topology linear ,
 
162
                strand ds ,
 
163
                seq-data
 
164
                  ncbi2na '1FFBDD3BBDDFE79EE7E487E258801E5B6B2380BA750B79029FB
 
165
E33FB7E15E3FE4D9EEB3C9733F25C00F0EEF349010EF4D1C11E74B9013C27BE0273C0510028F1D
 
166
695F346BC61A3F9CDC0'H } ,
 
167
              annot {
 
168
                {
 
169
                  data
 
170
                    ftable {
 
171
                      {
 
172
                        data
 
173
                          imp {
 
174
                            key "misc_recomb" } ,
 
175
                        location
 
176
                          int {
 
177
                            from 249 ,
 
178
                            to 259 ,
 
179
                            id
 
180
                              giim {
 
181
                                id 86658 } ,
 
182
                            fuzz-to
 
183
                              lim tl } ,
 
184
                        qual {
 
185
                          {
 
186
                            qual "note" ,
 
187
                            val "nifD recombination site" } } } ,
 
188
                      {
 
189
                        data
 
190
                          pub {
 
191
                            pub {
 
192
                              gen {
 
193
                                cit "Journal=""Unpublished (1989) Dept. of
 
194
 Bio., TA&M, College Station, TX 77843""," ,
 
195
                                authors {
 
196
                                  names
 
197
                                    str {
 
198
                                      "Brusca,J.S." } } } } } ,
 
199
                        location
 
200
                          int {
 
201
                            from 276 ,
 
202
                            to 292 ,
 
203
                                                        id
 
204
                                                                giim {
 
205
                                                                        id 86658} } } ,
 
206
 
 
207
                      {
 
208
                        data
 
209
                          pub {
 
210
                            pub {
 
211
                              muid 89327123 ,
 
212
                              article {
 
213
                                title {
 
214
                                  name "Excision of an 11-kilobase-pair DNA
 
215
 element from within the nifD gene in Anabaena variabilis heterocysts" } ,
 
216
                                authors {
 
217
                                  names
 
218
                                    str {
 
219
                                      "Brusca,J.S." ,
 
220
                                      "Hale,M.A." ,
 
221
                                      "Carrasco,C.D." ,
 
222
                                      "Golden,J.W." } } ,
 
223
                                from
 
224
                                  journal {
 
225
                                    title {
 
226
                                      name "J. Bacteriol." } ,
 
227
                                    imp {
 
228
                                      date
 
229
                                        std {
 
230
                                          year 1989 } ,
 
231
                                      volume "171" ,
 
232
                                      pages "4138-4145" } } } } } ,
 
233
                        location
 
234
                          int {
 
235
                            from 10 ,
 
236
                            to 275 ,
 
237
                                                        id
 
238
                                                                giim {
 
239
                                                                        id 86658 }} } } } } } } } } } ,
 
240
    seq {
 
241
      id {
 
242
        giim {
 
243
          id 86660 } } ,
 
244
      descr {
 
245
        title "xisA peptide A (alt.)" ,
 
246
        method concept-trans } ,
 
247
      inst {
 
248
        repr raw ,
 
249
        mol aa ,
 
250
        length 44 ,
 
251
        seq-data
 
252
          iupacaa "MQNQGQDKYQQAFADLEPLSSTDGSFLGSSLQAQQQREHMRTKV" } } ,
 
253
    seq {
 
254
      id {
 
255
        giim {
 
256
          id 86661 } } ,
 
257
      descr {
 
258
        title "xisA peptide B (alt.)" ,
 
259
        method concept-trans } ,
 
260
      inst {
 
261
        repr raw ,
 
262
        mol aa ,
 
263
        length 5 ,
 
264
        seq-data
 
265
          iupacaa "MRTKV" } } } ,
 
266
  annot {
 
267
    {
 
268
      data
 
269
        ftable {
 
270
          {
 
271
            data
 
272
              cdregion {
 
273
                code {
 
274
                  id 1 } } ,
 
275
            product
 
276
              whole
 
277
                giim {
 
278
                  id 86660 } ,
 
279
            location
 
280
              int {
 
281
                from 0 ,
 
282
                to 130 ,
 
283
                strand minus ,
 
284
                id
 
285
                  giim {
 
286
                    id 86658 } ,
 
287
                fuzz-from
 
288
                  lim gt } ,
 
289
            qual {
 
290
              {
 
291
                qual "note" ,
 
292
                val "xisA peptide A (alt.)" } } } ,
 
293
          {
 
294
            data
 
295
              cdregion {
 
296
                code {
 
297
                  id 1 } } ,
 
298
            product
 
299
              whole
 
300
                giim {
 
301
                  id 86661 } ,
 
302
            location
 
303
              int {
 
304
                from 0 ,
 
305
                to 13 ,
 
306
                strand minus ,
 
307
                id
 
308
                  giim {
 
309
                    id 86658 } ,
 
310
                fuzz-from
 
311
                  lim gt } ,
 
312
            qual {
 
313
              {
 
314
                qual "note" ,
 
315
                val "xisA peptide B (alt.)" } } } } } } }