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// Created by: Julien Dutheil
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// Created on: Sun Oct 12 14:39:29 2003
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Copyright or © or Copr. Bio++ Development Team, (November 17, 2004)
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This software is a computer program whose purpose is to provide classes
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for sequences analysis.
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This software is governed by the CeCILL license under French law and
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abiding by the rules of distribution of free software. You can use,
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modify and/ or redistribute the software under the terms of the CeCILL
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license as circulated by CEA, CNRS and INRIA at the following URL
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"http://www.cecill.info".
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As a counterpart to the access to the source code and rights to copy,
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modify and redistribute granted by the license, users are provided only
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with a limited warranty and the software's author, the holder of the
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economic rights, and the successive licensors have only limited
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In this respect, the user's attention is drawn to the risks associated
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with loading, using, modifying and/or developing or reproducing the
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software by the user in light of its specific status of free software,
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that may mean that it is complicated to manipulate, and that also
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therefore means that it is reserved for developers and experienced
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professionals having in-depth computer knowledge. Users are therefore
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encouraged to load and test the software's suitability as regards their
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requirements in conditions enabling the security of their systems and/or
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data to be ensured and, more generally, to use and operate it in the
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same conditions as regards security.
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The fact that you are presently reading this means that you have had
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knowledge of the CeCILL license and that you accept its terms.
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#include "Transliterator.h"
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#include "Alphabet/DNA.h"
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#include "Alphabet/RNA.h"
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#include "Alphabet/AlphabetTools.h"
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* @brief Reverse iterator to convert RNA to DNA.
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* This only changes U to T characters.
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* @see NucleicAcidsReplication
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public AbstractReverseTransliterator
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const Alphabet* dna_, * rna_;
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DNAToRNA(): AbstractReverseTransliterator(), dna_(&AlphabetTools::DNA_ALPHABET), rna_(&AlphabetTools::RNA_ALPHABET) {}
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DNAToRNA(const DNAToRNA& d2r): AbstractReverseTransliterator(d2r), dna_(d2r.dna_), rna_(d2r.rna_) {}
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DNAToRNA& operator=(const DNAToRNA& d2r)
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AbstractReverseTransliterator::operator=(d2r);
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virtual ~DNAToRNA() {}
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virtual const Alphabet* getSourceAlphabet() const { return dna_; }
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virtual const Alphabet* getTargetAlphabet() const { return rna_; }
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int translate(int state) const throw (BadIntException);
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std::string translate(const std::string& state) const throw (BadCharException);
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Sequence* translate(const Sequence& sequence) const throw (AlphabetMismatchException, Exception)
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return AbstractReverseTransliterator::translate(sequence);
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int reverse(int state) const throw (BadIntException);
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std::string reverse(const std::string& state) const throw (BadCharException);
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Sequence* reverse(const Sequence& sequence) const throw (AlphabetMismatchException, Exception)
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return AbstractReverseTransliterator::reverse(sequence);
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} //end of namespace bpp.