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- Committer: Package Import Robot
- Date: 2012-12-29 22:52:51 UTC
- mfrom: (2.1.3 raring-proposed)
- Revision ID: package-import@ubuntu.com-20121229225251-p1cifiucnlc8kr0x
Disable tests that fail without Internet access.
- files added:
- .pc/fix_ascii_characters_mapping
- .pc/fix_ascii_characters_mapping/biojava3-forester
- .pc/fix_ascii_characters_mapping/biojava3-forester/src
- .pc/fix_ascii_characters_mapping/biojava3-forester/src/main
- .pc/fix_ascii_characters_mapping/biojava3-forester/src/main/java
- .pc/fix_ascii_characters_mapping/biojava3-forester/src/main/java/org
- .pc/fix_ascii_characters_mapping/biojava3-forester/src/main/java/org/forester
- .pc/fix_ascii_characters_mapping/biojava3-forester/src/main/java/org/forester/test
- biojava3-aa-prop/src/main/assembly
- biojava3-alignment/src/main/java/demo
- biojava3-alignment/src/main/java/org/biojava3/alignment/io
- biojava3-alignment/src/test/java/org/biojava3/alignment/io
- biojava3-forester/src/main/java/classes
- biojava3-forester/src/main/java/classes/org
- biojava3-forester/src/main/java/classes/org/forester
- biojava3-forester/src/main/java/classes/org/forester/analysis
- biojava3-forester/src/main/java/classes/org/forester/application
- biojava3-forester/src/main/java/classes/org/forester/archaeopteryx
- biojava3-forester/src/main/java/classes/org/forester/archaeopteryx/phylogeny
- biojava3-forester/src/main/java/classes/org/forester/archaeopteryx/phylogeny/data
- biojava3-forester/src/main/java/classes/org/forester/archaeopteryx/tools
- biojava3-forester/src/main/java/classes/org/forester/archaeopteryx/webservices
- biojava3-forester/src/main/java/classes/org/forester/datastructures
- biojava3-forester/src/main/java/classes/org/forester/development
- biojava3-forester/src/main/java/classes/org/forester/evoinference
- biojava3-forester/src/main/java/classes/org/forester/evoinference/distance
- biojava3-forester/src/main/java/classes/org/forester/evoinference/matrix
- biojava3-forester/src/main/java/classes/org/forester/evoinference/matrix/character
- biojava3-forester/src/main/java/classes/org/forester/evoinference/matrix/distance
- biojava3-forester/src/main/java/classes/org/forester/evoinference/parsimony
- biojava3-forester/src/main/java/classes/org/forester/evoinference/tools
- biojava3-forester/src/main/java/classes/org/forester/go
- biojava3-forester/src/main/java/classes/org/forester/go/etc
- biojava3-forester/src/main/java/classes/org/forester/io
- biojava3-forester/src/main/java/classes/org/forester/io/parsers
- biojava3-forester/src/main/java/classes/org/forester/io/parsers/nexus
- biojava3-forester/src/main/java/classes/org/forester/io/parsers/nhx
- biojava3-forester/src/main/java/classes/org/forester/io/parsers/phyloxml
- biojava3-forester/src/main/java/classes/org/forester/io/parsers/phyloxml/data
- biojava3-forester/src/main/java/classes/org/forester/io/parsers/tol
- biojava3-forester/src/main/java/classes/org/forester/io/parsers/util
- biojava3-forester/src/main/java/classes/org/forester/io/writers
- biojava3-forester/src/main/java/classes/org/forester/msa
- biojava3-forester/src/main/java/classes/org/forester/pccx
- biojava3-forester/src/main/java/classes/org/forester/phylogeny
- biojava3-forester/src/main/java/classes/org/forester/phylogeny/data
- biojava3-forester/src/main/java/classes/org/forester/phylogeny/factories
- biojava3-forester/src/main/java/classes/org/forester/phylogeny/iterators
- biojava3-forester/src/main/java/classes/org/forester/protein
- biojava3-forester/src/main/java/classes/org/forester/sdi
- biojava3-forester/src/main/java/classes/org/forester/sequence
- biojava3-forester/src/main/java/classes/org/forester/species
- biojava3-forester/src/main/java/classes/org/forester/surfacing
- biojava3-forester/src/main/java/classes/org/forester/test
- biojava3-forester/src/main/java/classes/org/forester/test/examples
- biojava3-forester/src/main/java/classes/org/forester/tools
- biojava3-forester/src/main/java/classes/org/forester/util
- biojava3-forester/src/main/java/classes/org/forester/ws
- biojava3-forester/src/main/java/classes/org/forester/ws/hmmer
- biojava3-forester/src/main/java/classes/org/forester/ws/seqdb
- biojava3-forester/src/main/java/classes/org/forester/ws/uniprot
- biojava3-forester/src/main/java/classes/org/forester/ws/wabi
- biojava3-forester/src/main/java/org/forester/analysis
- biojava3-forester/src/main/java/org/forester/archaeopteryx/tools
- biojava3-forester/src/main/java/org/forester/evoinference
- biojava3-forester/src/main/java/org/forester/evoinference/distance
- biojava3-forester/src/main/java/org/forester/evoinference/matrix
- biojava3-forester/src/main/java/org/forester/evoinference/matrix/character
- biojava3-forester/src/main/java/org/forester/evoinference/matrix/character/CharacterStateMatrix.java
- biojava3-forester/src/main/java/org/forester/evoinference/matrix/distance
- biojava3-forester/src/main/java/org/forester/evoinference/parsimony
- biojava3-forester/src/main/java/org/forester/evoinference/tools
- biojava3-forester/src/main/java/org/forester/io/parsers/phyloxml/data
- biojava3-forester/src/main/java/org/forester/io/parsers/util
- biojava3-forester/src/main/java/org/forester/msa
- biojava3-forester/src/main/java/org/forester/protein
- biojava3-forester/src/main/java/org/forester/sequence
- biojava3-forester/src/main/java/org/forester/species
- biojava3-forester/src/main/java/org/forester/test/examples
- biojava3-forester/src/main/java/org/forester/ws
- biojava3-forester/src/main/java/org/forester/ws/hmmer
- biojava3-forester/src/main/java/org/forester/ws/seqdb
- biojava3-forester/src/main/java/org/forester/ws/uniprot
- biojava3-forester/src/main/java/org/forester/ws/wabi
- biojava3-forester/src/main/java/resources
- biojava3-protein-disorder/src/main/java/demo
- biojava3-structure/src/main/java/org/biojava/bio/structure/cath
- biojava3-structure/src/main/java/org/biojava/bio/structure/io/mmcif/model/PdbxStructAssemblyGen.java
- biojava3-structure/src/main/java/org/biojava/bio/structure/quaternary
- biojava3-structure/src/main/java/org/biojava/bio/structure/quaternary/BiologicalAssemblyBuilder.java
- biojava3-structure/src/main/java/org/biojava/bio/structure/quaternary/ModelTransformationMatrix.java
- biojava3-structure/src/main/java/org/biojava/bio/structure/quaternary/io
- biojava3-structure/src/main/java/org/biojava/bio/structure/quaternary/io/PDBBioUnitDataProvider.java
- biojava3-structure/src/main/java/org/biojava/bio/structure/quaternary/io/RawBioUnitDataProvider.java
- biojava3-structure/src/main/java/org/biojava3
- biojava3-structure/src/main/java/org/biojava3/structure
- biojava3-structure/src/test/java/org/biojava/bio/structure/cath
- integrationtest
- integrationtest/src
- integrationtest/src/main
- integrationtest/src/main/java
- integrationtest/src/test
- integrationtest/src/test/java
- integrationtest/src/test/java/org
- integrationtest/src/test/java/org/biojava
- integrationtest/src/test/java/org/biojava/bio
- integrationtest/src/test/java/org/biojava/bio/structure
- integrationtest/src/test/java/org/biojava/bio/structure/align
- integrationtest/src/test/java/org/biojava/bio/structure/align/ce
- integrationtest/src/test/java/org/biojava/bio/structure/align/fatcat
- integrationtest/src/test/java/org/biojava/bio/structure/cath
- integrationtest/src/test/java/org/biojava/bio/structure/scop
- integrationtest/src/test/java/org/biojava/bio/structure/util
- integrationtest/src/test/java/org/integrationtest
- integrationtest/src/test/resources
- integrationtest/target
- integrationtest/target/failsafe-reports
- integrationtest/target/generated-site
- integrationtest/target/generated-site/xdoc
- integrationtest/target/generated-site/xdoc/statscm
- integrationtest/target/generated-test-sources
- integrationtest/target/generated-test-sources/test-annotations
- integrationtest/target/javadoc-bundle-options
- integrationtest/target/maven-archiver
- integrationtest/target/site
- integrationtest/target/site/css
- integrationtest/target/site/images
- integrationtest/target/site/images/logos
- integrationtest/target/site/statscm
- integrationtest/target/surefire
- integrationtest/target/surefire-reports
- integrationtest/target/surefire-reports/org.biojava.bio.structure.align.fatcat.TestOutputStrings.txt
- integrationtest/target/test-classes
- integrationtest/target/test-classes/org
- integrationtest/target/test-classes/org/biojava
- integrationtest/target/test-classes/org/biojava/bio
- integrationtest/target/test-classes/org/biojava/bio/structure
- integrationtest/target/test-classes/org/biojava/bio/structure/align
- integrationtest/target/test-classes/org/biojava/bio/structure/align/ce
- integrationtest/target/test-classes/org/biojava/bio/structure/align/fatcat
- integrationtest/target/test-classes/org/biojava/bio/structure/cath
- integrationtest/target/test-classes/org/biojava/bio/structure/scop
- integrationtest/target/test-classes/org/biojava/bio/structure/util
- integrationtest/target/test-classes/org/integrationtest
- protein-comparison-tool
- protein-comparison-tool/src
- protein-comparison-tool/src/main
- protein-comparison-tool/src/main/assembly
- protein-comparison-tool/target
- protein-comparison-tool/target/archive-tmp
- protein-comparison-tool/target/generated-site
- protein-comparison-tool/target/generated-site/xdoc
- protein-comparison-tool/target/generated-site/xdoc/statscm
- protein-comparison-tool/target/javadoc-bundle-options
- protein-comparison-tool/target/maven-archiver
- protein-comparison-tool/target/site
- protein-comparison-tool/target/site/css
- protein-comparison-tool/target/site/images
- protein-comparison-tool/target/site/images/logos
- protein-comparison-tool/target/site/statscm
- protein-comparison-tool/target/surefire
- files removed:
- .pc/fix_ascii_character_issue
- .pc/fix_ascii_character_issue/biojava3-forester
- .pc/fix_ascii_character_issue/biojava3-forester/src
- .pc/fix_ascii_character_issue/biojava3-forester/src/main
- .pc/fix_ascii_character_issue/biojava3-forester/src/main/java
- .pc/fix_ascii_character_issue/biojava3-forester/src/main/java/org
- .pc/fix_ascii_character_issue/biojava3-forester/src/main/java/org/forester
- .pc/fix_ascii_character_issue/biojava3-forester/src/main/java/org/forester/archaeopteryx
- biojava3-forester/src/main/java/META-INF
- biojava3-forester/src/main/java/org/forester/io/parsers/phyloxml/phylogenydata
- biojava3-forester/src/main/java/org/forester/io/parsers/phyloxml/phylogenydata/AnnotationParser.java
- biojava3-forester/src/main/java/org/forester/io/parsers/phyloxml/phylogenydata/ConfidenceParser.java
- biojava3-forester/src/main/java/org/forester/io/parsers/phyloxml/phylogenydata/IdentifierParser.java
- biojava3-forester/src/main/java/org/forester/phylogenyinference
- biojava3-forester/src/main/java/org/forester/phylogenyinference/SymmetricalDistanceMatrixParser.java
- biojava3-structure/src/test/java/org/biojava/bio/structure/align/fatcat
- files modified:
- .pc/applied-patches
added
removed
integrationtest/target/surefire-reports/org.biojava.bio.structure.align.ce.OptimalCECPMainTest.txt
