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Viewing changes to src/org/usadellab/trimmomatic/threading/TrimLogWorker.java

  • Committer: Package Import Robot
  • Author(s): Andreas Tille, Olivier Sallou
  • Date: 2013-08-07 12:14:33 UTC
  • mfrom: (1.1.1)
  • Revision ID: package-import@ubuntu.com-20130807121433-qxchmfrrodridtvz
Tags: 0.30+dfsg-1
http://bugs.debian.org/718850
* New upstream version
* debian/copyright:
   - DEP5
   - Add Files-Excluded to document what was removed from original source
* debian/watch: handle +dfsg suffix
* debian/get-orig-source: use new uscan if available
* debian/control:
   - cme fix dpkg-control
   - debhelper 9
   - use anonscm in Vcs fields
   - Build-Depends: default-jdk | ...
     Closes: #718850
[ Olivier Sallou]
    * Manage java libs with javahelper
    * Provide upstream missing MANIFEST.MF

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src/org/usadellab/trimmomatic/threading/TrimLogWorker.java
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package org.usadellab.trimmomatic.threading;
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import java.io.PrintStream;
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import java.util.Iterator;
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import java.util.List;
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import java.util.concurrent.ArrayBlockingQueue;
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import java.util.concurrent.Future;
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import java.util.concurrent.atomic.AtomicBoolean;
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import org.usadellab.trimmomatic.fastq.FastqRecord;
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import org.usadellab.trimmomatic.fastq.FastqSerializer;
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public class TrimLogWorker implements Runnable
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{
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        private PrintStream trimLogStream;