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~ubuntu-branches/ubuntu/trusty/python-biopython/trusty-proposed

Viewing all changes in revision 7.

Committer: Bazaar Package Importer
Author(s): Philipp Benner
Date: 2009-08-24 09:29:27 UTC
mfrom: (1.3.3 upstream) (4.1.4 sid)
Revision ID: james.westby@ubuntu.com-20090824092927-2wwh36vwnfgn98kl

Tags: 1.51final-2

http://bugs.debian.org/543236

Merged patch from ubuntu to make the package ready for
python2.6 (Closes: #543236).

files added:
Bio/Motif/_pwm.c

Doc/Tutorial.txt

Doc/biopdb_faq.pdf

Tests/Blast/bt104

Tests/Blast/bt105

Tests/GenBank/pBAD30.gb

Tests/Nexus/int_node_labels.nex

Tests/Phd/phd_454

Tests/Phd/phd_solexa

Tests/PopGen/big.gen

Tests/PopGen/haplo.gen

Tests/Quality/error_diff_ids.fastq

Tests/Quality/error_long_qual.fastq

Tests/Quality/error_no_qual.fastq

Tests/Quality/error_qual_del.fastq

Tests/Quality/error_qual_escape.fastq

Tests/Quality/error_qual_null.fastq

Tests/Quality/error_qual_space.fastq

Tests/Quality/error_qual_tab.fastq

Tests/Quality/error_qual_unit_sep.fastq

Tests/Quality/error_qual_vtab.fastq

Tests/Quality/error_short_qual.fastq

Tests/Quality/error_spaces.fastq

Tests/Quality/error_tabs.fastq

Tests/Quality/error_trunc_at_plus.fastq

Tests/Quality/error_trunc_at_qual.fastq

Tests/Quality/error_trunc_at_seq.fastq

Tests/Quality/illumina_faked.fastq

Tests/Quality/sanger_93.fastq

Tests/Quality/sanger_faked.fastq

Tests/Quality/solexa_faked.fastq

Tests/test_SeqIO_FastaIO.py

Tests/test_SeqIO_QualityIO.py

files removed:
Bio/Emboss/Primer.py

Bio/Emboss/primer3_format.py

Bio/Emboss/primersearch_format.py

Tests/Quality/solexa.fastq

Tests/output/test_Fasta2

Tests/test_Fasta2.py

debian/python-biopython-martel.files

files modified:
Bio/Align/FormatConvert.py

Bio/AlignAce/AlignAceStandalone.py

Bio/AlignIO/EmbossIO.py

Bio/AlignIO/Interfaces.py

Bio/AlignIO/StockholmIO.py

Bio/Application/__init__.py

Bio/Blast/NCBIStandalone.py

Bio/Blast/NCBIWWW.py

Bio/Blast/NCBIXML.py

Bio/Blast/Record.py

Bio/Data/CodonTable.py

Bio/Emboss/Applications.py

Bio/Fasta/FastaAlign.py

Bio/Fasta/__init__.py

Bio/GFF/__init__.py

Bio/GenBank/Scanner.py

Bio/Motif/_Motif.py

Bio/Nexus/Trees.py

Bio/PDB/Dice.py

Bio/PDB/MMCIF2Dict.py

Bio/PDB/PDBList.py

Bio/PDB/StructureAlignment.py

Bio/SeqIO/FastaIO.py

Bio/SeqIO/InsdcIO.py

Bio/SeqIO/Interfaces.py

Bio/SeqIO/PhdIO.py

Bio/SeqIO/QualityIO.py

Bio/SeqIO/__init__.py

Bio/SeqRecord.py

Bio/Sequencing/Phd.py

Bio/SwissProt/__init__.py

Bio/__init__.py

DEPRECATED

Doc/Tutorial.html

Doc/Tutorial.pdf

Doc/Tutorial.tex

Doc/install/Installation.pdf

NEWS

PKG-INFO

Tests/Fasta/README

Tests/output/test_SeqIO

Tests/output/test_align

Tests/run_tests.py

Tests/test_BioSQL_SeqIO.py

Tests/test_CodonUsage.py

Tests/test_Dialign_tool.py

Tests/test_Emboss.py

Tests/test_Fasta.py

Tests/test_Mafft_tool.py

Tests/test_Muscle_tool.py

Tests/test_NCBITextParser.py

Tests/test_NNGene.py

Tests/test_Nexus.py

Tests/test_PDB.py

Tests/test_Phd.py

Tests/test_Prank_tool.py

Tests/test_Probcons_tool.py

Tests/test_SeqIO.py

Tests/test_SeqIO_features.py

Tests/test_TCoffee_tool.py

Tests/test_align.py

debian/README.Debian

debian/changelog

debian/control

debian/copyright

debian/python-biopython-sql.files

debian/python-biopython.files

debian/rules

setup.py

Show diffs side-by-side

added added

removed removed

Bio/Align/FormatConvert.py

Bio/AlignAce/AlignAceStandalone.py

Bio/AlignIO/EmbossIO.py

Bio/AlignIO/Interfaces.py

Bio/AlignIO/StockholmIO.py

Bio/Application/__init__.py

Bio/Blast/NCBIStandalone.py

Bio/Blast/NCBIWWW.py

Bio/Blast/NCBIXML.py

Bio/Blast/Record.py

Bio/Data/CodonTable.py

Bio/Emboss/Applications.py

Bio/Emboss/Primer.py

Bio/Emboss/primer3_format.py

Bio/Emboss/primersearch_format.py

Bio/Fasta/FastaAlign.py

Bio/Fasta/__init__.py

Bio/GFF/__init__.py

Bio/GenBank/Scanner.py

Bio/Motif/_Motif.py

Bio/Motif/_pwm.c

Bio/Nexus/Trees.py

Bio/PDB/Dice.py

Bio/PDB/MMCIF2Dict.py

Bio/PDB/PDBList.py

Bio/PDB/StructureAlignment.py

Bio/SeqIO/FastaIO.py

Bio/SeqIO/InsdcIO.py

Bio/SeqIO/Interfaces.py

Bio/SeqIO/PhdIO.py

Bio/SeqIO/QualityIO.py

Bio/SeqIO/__init__.py

Bio/SeqRecord.py

Bio/Sequencing/Phd.py

Bio/SwissProt/__init__.py

Bio/__init__.py

Doc/Tutorial.html

Doc/Tutorial.pdf

Doc/Tutorial.tex

Doc/Tutorial.txt

Doc/biopdb_faq.pdf

Doc/install/Installation.pdf

Tests/Blast/bt104

Tests/Blast/bt105

Tests/Fasta/README

Tests/GenBank/pBAD30.gb

Tests/Nexus/int_node_labels.nex

Tests/Phd/phd_454

Tests/Phd/phd_solexa

Tests/PopGen/big.gen

Tests/PopGen/haplo.gen

Tests/Quality/error_diff_ids.fastq

Tests/Quality/error_long_qual.fastq

Tests/Quality/error_no_qual.fastq

Tests/Quality/error_qual_del.fastq

Tests/Quality/error_qual_escape.fastq

Tests/Quality/error_qual_null.fastq

Tests/Quality/error_qual_space.fastq

Tests/Quality/error_qual_tab.fastq

Tests/Quality/error_qual_unit_sep.fastq

Tests/Quality/error_qual_vtab.fastq

Tests/Quality/error_short_qual.fastq

Tests/Quality/error_spaces.fastq

Tests/Quality/error_tabs.fastq

Tests/Quality/error_trunc_at_plus.fastq

Tests/Quality/error_trunc_at_qual.fastq

Tests/Quality/error_trunc_at_seq.fastq

Tests/Quality/illumina_faked.fastq

Tests/Quality/sanger_93.fastq

Tests/Quality/sanger_faked.fastq

Tests/Quality/solexa.fastq

Tests/Quality/solexa_faked.fastq

Tests/output/test_Fasta2

Tests/output/test_SeqIO

Tests/output/test_align

Tests/run_tests.py

Tests/test_BioSQL_SeqIO.py

Tests/test_CodonUsage.py

Tests/test_Dialign_tool.py

Tests/test_Emboss.py

Tests/test_Fasta.py

Tests/test_Fasta2.py

Tests/test_Mafft_tool.py

Tests/test_Muscle_tool.py

Tests/test_NCBITextParser.py

Tests/test_NNGene.py

Tests/test_Nexus.py

Tests/test_PDB.py

Tests/test_Phd.py

Tests/test_Prank_tool.py

Tests/test_Probcons_tool.py

Tests/test_SeqIO.py

Tests/test_SeqIO_FastaIO.py

Tests/test_SeqIO_QualityIO.py

Tests/test_SeqIO_features.py

Tests/test_TCoffee_tool.py

Tests/test_align.py

debian/README.Debian

debian/changelog

debian/copyright

debian/python-biopython-martel.files

debian/python-biopython-sql.files

debian/python-biopython.files

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