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#' @param strata Stratification variable. If provieded, scores are computed within strata and
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#' @param trait.type "gaussian" or "binomial" or "guess" (later option guesses trait type)
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#' empirical genome-wide significance. See \code{\link{emp.qtscore}}, which
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#' calls qtscore with times>1 for details
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#' @param quiet do not print warning messages