← Back to branch summary

~ubuntu-branches/ubuntu/utopic/circos/utopic

« back to all changes in this revision

Viewing changes to README

  • Committer: Package Import Robot
  • Author(s): Olivier Sallou
  • Date: 2013-05-20 09:01:27 UTC
  • mfrom: (1.1.3)
  • Revision ID: package-import@ubuntu.com-20130520090127-s5nbumg8563x00ee
Tags: 0.64-1
New upstream release

Show diffs side-by-side

added added

removed removed

Lines of Context:
README
153
153
 
154
154
Look at the created gddiag.png. It should look like this
155
155
 
156
 
http://www.circos.ca/tutorials/lessons/configuration/png_output/images
 
156
  http://www.circos.ca/documentation/tutorials/configuration/png_output/images
157
157
 
158
158
If you don't see any text, see 4.b.2 below.
159
159
 
198
198
Many of these involve manipulating link files. These tools independent
199
199
scripts and are covered in Tutorial 9.
200
200
 
201
 
  http://circos.ca/tutorials/lessons/utilities
 
201
  http://www.circos.ca/documentation/tutorials/utilities
202
202
 
203
203
The tools can be downloaded independently. Note that the stand-alone
204
204
tools distribution may contain scripts that are newer than those
222
222
 
223
223
For a full explanation of the configuration system, see
224
224
 
225
 
http://circos.ca/tutorials/lessons/configuration/configuration_files/
 
225
  http://www.circos.ca/documentation/tutorials/configuration/configuration_files
226
226
 
227
227
 
228
228
2. BUGS
232
232
I appreciate any and all comments you may have about Circos. Please
233
233
use the Google Group for questions and bug reports.
234
234
 
235
 
http://groups.google.com/group/circos-data-visualization
 
235
  http://groups.google.com/group/circos-data-visualization
236
236
 
237
237
2.b  Known issues
238
238
 
323
323
 
324
324
For details about the configuration files, see etc/README and
325
325
 
326
 
http://circos.ca/tutorials/lessons/configuration/configuration_files/
 
326
  http://www.circos.ca/documentation/tutorials/configuration/configuration_files
327
327
 
328
328
4.b  Typical errors and how to fix them
329
329
 
330
330
4.b.1 Dealing with errors
331
331
 
332
 
  http://mkweb.bcgsc.ca/dev/circos/documentation/tutorials/configuration/errors/
 
332
  http://www.circos.ca/documentation/tutorials/configuration/errors
333
333
 
334
334
4.b.2 No text in figures
335
335
 
345
345
 
346
346
You'll need to reinstall GD.
347
347
 
348
 
http://search.cpan.org/dist/GD/
 
348
  http://search.cpan.org/dist/GD/
349
349
 
350
350
This issue comes up a lot. Circos has this to say about it
351
351
 
353
353
 
354
354
and many threads about it have been created on the message boards
355
355
 
356
 
http://groups.google.com/group/circos-data-visualization/browse_thread/thread/c893b8b612c2c5cf
357
 
 
358
 
 
359
 
HISTORY
 
356
  http://groups.google.com/group/circos-data-visualization/browse_thread/thread/c893b8b612c2c5cf
 
357
 
 
358
 
 
359
README HISTORY
 
360
 
 
361
2013 Feb 12 - standardized URLs for /documentation/tutorials
360
362
 
361
363
2012 Feb 20 - added link to thread about TTF support and a command to fake TTF font error
362
364