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Viewing changes to example/etc/karyotype.and.layout.conf

  • Committer: Package Import Robot
  • Author(s): Olivier Sallou
  • Date: 2013-05-20 09:01:27 UTC
  • mfrom: (1.1.3)
  • Revision ID: package-import@ubuntu.com-20130520090127-s5nbumg8563x00ee
Tags: 0.64-1
New upstream release

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example/etc/karyotype.and.layout.conf
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#chromosomes         = -/[XY]/;-/hs(1[1-9]|2\d)$/;-/rn/;-/mm/;rn1;mm1
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chromosomes          = -/[XY]/;-/rn/;-/mm/;rn1;mm1
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#chromosomes         = hs4;hs3;hs5;hs7;hs8;hs12;hs6;hs11;hs14;hs13;mm1;
 
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#chromosomes         = hs4;hs3;hs5;hs7;hs8;hs12;hs6;hs11;hs14;hs13;mm1
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#chromosomes_order   = hs1,hs2,mm2,mm1
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chromosomes_color    = /mm/=blues-5-seq-4,/rn/=reds-5-seq-4
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chromosomes_reverse  = mm1
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# /hs/=0.5rn - relative scaling, normalized by number of ideograms matching rx
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#              this is equivalent to /hs/=0.0208r (0.5/24).
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chromosomes_scale    = /hs/=0.5rn,rn1=0.25r,mm1:0.25r
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# rn1 and mm1 scaled to each occupy 1/4 of the figure
 
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chromosomes_scale   = rn1=0.25r,mm1:0.25r
 
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# /hs/=0.5rn - relative scaling, normalized by number of ideograms matching /hs/
 
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#              this is equivalent to /hs/=0.0227r (0.5/22).
 
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#chromosomes_scale   = /hs/=0.5rn
 
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chromosomes_radius = hs2:1.05r;hs3:1.20r;hs4:1.35r;hs5:1.15r;hs6:1.05r